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Allen Institute for Brain Science gene-expression data
Gene Expression Data, supplied by Allen Institute for Brain Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/gene+expression+data/gene+expression+data/pmc06093352-151-0-23
Average 90 stars, based on 1 article reviews
gene-expression data - by Bioz Stars, 2026-11
90/100 stars

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Related Articles

Gene Expression:

Article Title: Transcriptional expression of radiation-induced early cortical morphological alterations and its association with radiation necrosis in patients with nasopharyngeal carcinoma.
Article Snippet: https://doi.org/10.1016/j.radonc.2023.109770 0167-8140/ 2023 Elsevier B.V. All rights reserved.. Abbreviations: NPC, nasopharyngeal carcinoma; RT, radiotherapy; RN, radiation necrosis; CV, cortical volume; CT, cortical thickness; SVM, support vector machine; LR, logistic regression; RF, random forest; ROC, receiver operating characteristic; AUC, area under the curve.. ⇑ Corresponding author at: Department of Radiology, Huazhong University of Science and Technology Union Shenzhen Hospital, 89 Taoyuan road, Nanshan district, Shenzhen 518052, China.

Article Title: Mapping striatal functional gradients and associated gene expression in Parkinson's disease with continuous cognitive impairment.
Article Snippet: .. The gene expression data supporting the findings are available from the 2010 Allen Institute for Brain Science (http://www.brainmap.org). ..

Article Title: Novel effects of Ras-MAPK pathogenic variants on the developing human brain and their link to gene expression and inhibition abilities.
Article Snippet: .. Third, using gene expression levels from postmortem adult human brains (Allen Institute for Brain Science; http://www.brain-map.org), we explored whether PTPN11 expression levels correlate with NS effects on regional brain anatomy [16, 17]. ..

Article Title: Adult stuttering prevalence I: Systematic review and identification of stuttering in large populations.
Article Snippet: .. Chow et al. (2020) used gene expression data from the Allen Institute for Brain Science to establish that expression patterns of two stuttering-related genes (GNPTG and NAGPA) showed a positive spatial correlation with the magnitude of grey matter volume differences between groups of children who did and did not stutter. ..

Article Title: An association study of multimodal neuroimage features and gene expression in adolescents with centrally mediated abdominal pain syndrome.
Article Snippet: This is a PDF file of an article that has undergone enhancements after acceptance, such as the addition of a cover page and metadata, and formatting for readability, but it is not yet the definitive version of record.. This version will undergo additional copyediting, typesetting and review before it is published in its final form, but we are providing this version to give early visibility of the article.. Please note that, during the production process, errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain.

Article Title: Neural correlates differ between crystallized and fluid intelligence in adolescents
Article Snippet: .. The authors thank the Allen Institute for Brain Science for providing the gene expression data. ..

Article Title: Mapping striatal functional gradients and associated gene expression in Parkinson’s disease with continuous cognitive impairment
Article Snippet: .. The gene expression data supporting the findings are available from the 2010 Allen Institute for Brain Science ( http://www.brainmap.org ). ..

Article Title: Novel effects of Ras-MAPK pathogenic variants on the developing human brain and their link to gene expression and inhibition abilities
Article Snippet: .. Third, using gene expression levels from postmortem adult human brains (Allen Institute for Brain Science; http://www.brain-map.org ), we explored whether PTPN11 expression levels correlate with NS effects on regional brain anatomy [ , ]. ..

Microarray:

Article Title: Transcriptional expression of radiation-induced early cortical morphological alterations and its association with radiation necrosis in patients with nasopharyngeal carcinoma.
Article Snippet: https://doi.org/10.1016/j.radonc.2023.109770 0167-8140/ 2023 Elsevier B.V. All rights reserved.. Abbreviations: NPC, nasopharyngeal carcinoma; RT, radiotherapy; RN, radiation necrosis; CV, cortical volume; CT, cortical thickness; SVM, support vector machine; LR, logistic regression; RF, random forest; ROC, receiver operating characteristic; AUC, area under the curve.. ⇑ Corresponding author at: Department of Radiology, Huazhong University of Science and Technology Union Shenzhen Hospital, 89 Taoyuan road, Nanshan district, Shenzhen 518052, China.

Expressing:

Article Title: Novel effects of Ras-MAPK pathogenic variants on the developing human brain and their link to gene expression and inhibition abilities.
Article Snippet: .. Third, using gene expression levels from postmortem adult human brains (Allen Institute for Brain Science; http://www.brain-map.org), we explored whether PTPN11 expression levels correlate with NS effects on regional brain anatomy [16, 17]. ..

Article Title: Adult stuttering prevalence I: Systematic review and identification of stuttering in large populations.
Article Snippet: .. Chow et al. (2020) used gene expression data from the Allen Institute for Brain Science to establish that expression patterns of two stuttering-related genes (GNPTG and NAGPA) showed a positive spatial correlation with the magnitude of grey matter volume differences between groups of children who did and did not stutter. ..

Article Title: Novel effects of Ras-MAPK pathogenic variants on the developing human brain and their link to gene expression and inhibition abilities
Article Snippet: .. Third, using gene expression levels from postmortem adult human brains (Allen Institute for Brain Science; http://www.brain-map.org ), we explored whether PTPN11 expression levels correlate with NS effects on regional brain anatomy [ , ]. ..

Magnetic Resonance Imaging:

Article Title: An association study of multimodal neuroimage features and gene expression in adolescents with centrally mediated abdominal pain syndrome.
Article Snippet: This is a PDF file of an article that has undergone enhancements after acceptance, such as the addition of a cover page and metadata, and formatting for readability, but it is not yet the definitive version of record.. This version will undergo additional copyediting, typesetting and review before it is published in its final form, but we are providing this version to give early visibility of the article.. Please note that, during the production process, errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain.



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(A) Cohen’s h values for pairwise comparisons between 𝒞 and the other two groups: ℬ and ℐ . Primate <t>Specific</t> Ratios are calculated as in . A higher absolute Cohen’s h indicates a greater difference in ratios between the two compared groups. Green bar represents ℬ , orange bar represents ℐ , and blue bars represent 𝒞 . (B) Results of Fisher’s exact tests for pairwise comparisons between each of ℬ , ℐ , and 𝒞 and each control group ( ℱ and ℛ ), together with the comparison between ℱ and ℛ . Primate Specific Ratios are calculated as in . Statistical significance is denoted by asterisks. Results with p-values less than 0.01 are indicated by two asterisks (**), results with p-values less than 0.05 are indicated by one asterisk (*), and all other results are marked as ns . Green bar represents ℬ , orange bar represents ℐ , blue bar represents 𝒞 , gray bars represent ℛ , and purple bars represent ℱ . (C) The number of tissues corresponding to each quantile for the brain <t>genes</t> and immune-related genes. Green bars represent ℬ , orange bars represent ℐ , and gray bars represent all genes that have at least one highly expressed <t>tissue</t> in Human Protein Atlas [ , ]. (D) The number and ratio of genes highly expressed specifically in brain tissues or immune-related tissues, out of 1019 brain genes and 586 immune-related genes, respectively.
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(A) Cohen’s h values for pairwise comparisons between 𝒞 and the other two groups: ℬ and ℐ . Primate <t>Specific</t> Ratios are calculated as in . A higher absolute Cohen’s h indicates a greater difference in ratios between the two compared groups. Green bar represents ℬ , orange bar represents ℐ , and blue bars represent 𝒞 . (B) Results of Fisher’s exact tests for pairwise comparisons between each of ℬ , ℐ , and 𝒞 and each control group ( ℱ and ℛ ), together with the comparison between ℱ and ℛ . Primate Specific Ratios are calculated as in . Statistical significance is denoted by asterisks. Results with p-values less than 0.01 are indicated by two asterisks (**), results with p-values less than 0.05 are indicated by one asterisk (*), and all other results are marked as ns . Green bar represents ℬ , orange bar represents ℐ , blue bar represents 𝒞 , gray bars represent ℛ , and purple bars represent ℱ . (C) The number of tissues corresponding to each quantile for the brain <t>genes</t> and immune-related genes. Green bars represent ℬ , orange bars represent ℐ , and gray bars represent all genes that have at least one highly expressed <t>tissue</t> in Human Protein Atlas [ , ]. (D) The number and ratio of genes highly expressed specifically in brain tissues or immune-related tissues, out of 1019 brain genes and 586 immune-related genes, respectively.
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Image Search Results


Journal: Cell Genomics

Article Title: MultiSP deciphers tissue structure and multicellular communication from spatial multi-omics data

doi: 10.1016/j.xgen.2026.101141

Figure Lengend Snippet:

Article Snippet: 10× Visium human tonsil gene and protein expression data , 10× Genomics , https://www.10xgenomics.com/resources/datasets/gene-protein-expression-library-of-human-tonsil-cytassist-ffpe-2-standard.

Techniques: Expressing, Software

(A) Cohen’s h values for pairwise comparisons between 𝒞 and the other two groups: ℬ and ℐ . Primate Specific Ratios are calculated as in . A higher absolute Cohen’s h indicates a greater difference in ratios between the two compared groups. Green bar represents ℬ , orange bar represents ℐ , and blue bars represent 𝒞 . (B) Results of Fisher’s exact tests for pairwise comparisons between each of ℬ , ℐ , and 𝒞 and each control group ( ℱ and ℛ ), together with the comparison between ℱ and ℛ . Primate Specific Ratios are calculated as in . Statistical significance is denoted by asterisks. Results with p-values less than 0.01 are indicated by two asterisks (**), results with p-values less than 0.05 are indicated by one asterisk (*), and all other results are marked as ns . Green bar represents ℬ , orange bar represents ℐ , blue bar represents 𝒞 , gray bars represent ℛ , and purple bars represent ℱ . (C) The number of tissues corresponding to each quantile for the brain genes and immune-related genes. Green bars represent ℬ , orange bars represent ℐ , and gray bars represent all genes that have at least one highly expressed tissue in Human Protein Atlas [ , ]. (D) The number and ratio of genes highly expressed specifically in brain tissues or immune-related tissues, out of 1019 brain genes and 586 immune-related genes, respectively.

Journal: PLOS One

Article Title: Comparative genomics of human brain and immune gene preservation across species

doi: 10.1371/journal.pone.0348713

Figure Lengend Snippet: (A) Cohen’s h values for pairwise comparisons between 𝒞 and the other two groups: ℬ and ℐ . Primate Specific Ratios are calculated as in . A higher absolute Cohen’s h indicates a greater difference in ratios between the two compared groups. Green bar represents ℬ , orange bar represents ℐ , and blue bars represent 𝒞 . (B) Results of Fisher’s exact tests for pairwise comparisons between each of ℬ , ℐ , and 𝒞 and each control group ( ℱ and ℛ ), together with the comparison between ℱ and ℛ . Primate Specific Ratios are calculated as in . Statistical significance is denoted by asterisks. Results with p-values less than 0.01 are indicated by two asterisks (**), results with p-values less than 0.05 are indicated by one asterisk (*), and all other results are marked as ns . Green bar represents ℬ , orange bar represents ℐ , blue bar represents 𝒞 , gray bars represent ℛ , and purple bars represent ℱ . (C) The number of tissues corresponding to each quantile for the brain genes and immune-related genes. Green bars represent ℬ , orange bars represent ℐ , and gray bars represent all genes that have at least one highly expressed tissue in Human Protein Atlas [ , ]. (D) The number and ratio of genes highly expressed specifically in brain tissues or immune-related tissues, out of 1019 brain genes and 586 immune-related genes, respectively.

Article Snippet: There are six types of data used in this work: (1) CDS (coding sequence) data of 32 primate species and 4 non-primate species [ , ]; (2) tissue specific gene expression data obtained from the Human Protein Atlas 23.0 [ , ]; (3) 1360 human genes highly expressed in the brain or the immune system [ , ]; (4) 295 random human genes selected using the random.sample() function in Python 3.10.8; (5) 369 human genes each from a distinct HGNC [ ] gene family group; and (6) protein sequences of the genes obtained from UniProt [ ].

Techniques: Control, Comparison