Review



gene expression omnibus public genomic data repository  (Biotechnology Information)

 
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
  • 86

    Structured Review

    Biotechnology Information gene expression omnibus public genomic data repository
    Gene Expression Omnibus Public Genomic Data Repository, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/gene+expression+data/expression+gene+omnibus+%E2%80%A2/pm42297033-150-18-16
    Average 86 stars, based on 1 article reviews
    gene expression omnibus public genomic data repository - by Bioz Stars, 2026-11
    86/100 stars

    Images

    Related Articles

    Gene Expression:

    Article Title: Synovial transcriptomic biomarkers predict structural severity in equine osteochondral fragment-induced experimental osteoarthritis.
    Article Snippet: .. The names of the repository and accession number can be found at the National Center for Biotechnology Information Gene Expression Omnibus public genomic data repository, with accession nos. ..

    Article Title: Single-cell RNA sequencing profiles drug activity within spatially engineered 3D cultures.
    Article Snippet: .. The scRNA-seq datasets generated in this study have been deposited in the National Centre for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) under accession number GSE245416 [https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245416]. ..

    Article Title: Cepharanthine suppresses lung adenocarcinoma through targeting glutathione peroxidase 4
    Article Snippet: .. Microarray datasets pertinent to LUAD were sourced from the Gene Expression Omnibus (GEO) database, a comprehensive public gene expression repository established by the National Center for Biotechnology Information in the United States ( https://www.ncbi.nlm.nih.gov/geo/ ). .. Specifically, the GSE10799 dataset ( ) from the GPL570 platform (‘HG-U133_Plus_2 Affymetrix Human Genome U133 Plus 2.0 Array’) was accessed, encompassing 16 LUAD samples and 3 normal samples.

    Article Title: APE1 inhibition-promoted pyroptosis triggers T-cell infiltration and enhances anti-tumor immunity in NSCLC
    Article Snippet: .. RNA sequencing data that support the findings of this study have been deposited in the National Center for Biotechnology Information (NCBI)'s Gene Expression Omnibus (GEO) ( GSE220807 ). ..

    Article Title: A Phase Ib Trial of Copanlisib in Combination with Venetoclax in Patients with Relapsed or Refractory B-Cell Non-Hodgkin Lymphoma-SAKK 66/18 Trial.
    Article Snippet: .. Expression data will be available in the National Center for Biotechnology Information Gene Expression Omnibus (http://www.ncbi.nlm.nih.gov/geo). ..

    Generated:

    Article Title: Single-cell RNA sequencing profiles drug activity within spatially engineered 3D cultures.
    Article Snippet: .. The scRNA-seq datasets generated in this study have been deposited in the National Centre for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) under accession number GSE245416 [https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245416]. ..

    Microarray:

    Article Title: Cepharanthine suppresses lung adenocarcinoma through targeting glutathione peroxidase 4
    Article Snippet: .. Microarray datasets pertinent to LUAD were sourced from the Gene Expression Omnibus (GEO) database, a comprehensive public gene expression repository established by the National Center for Biotechnology Information in the United States ( https://www.ncbi.nlm.nih.gov/geo/ ). .. Specifically, the GSE10799 dataset ( ) from the GPL570 platform (‘HG-U133_Plus_2 Affymetrix Human Genome U133 Plus 2.0 Array’) was accessed, encompassing 16 LUAD samples and 3 normal samples.

    Article Title: Quercetin Affects Carcinogenic Phenotype of Breast and Lung Cancer Cells Differentially Through Sterol Regulation Mediated by MALAT1 Perturbation.
    Article Snippet: Targeting MALAT1 in cancer treatment is an attractive strategy due to the undebatable role of this lncRNA in the disease.. Small molecules toward this noncoding RNA have, in fact, entered preclinical trials, without resulting in a robust demonstration in favor of their use in therapy.. To test the robustness of this method, we asked how aspects of carcinogenesis get affected when knocking down MALAT1 in different cell lines.

    RNA Sequencing:

    Article Title: APE1 inhibition-promoted pyroptosis triggers T-cell infiltration and enhances anti-tumor immunity in NSCLC
    Article Snippet: .. RNA sequencing data that support the findings of this study have been deposited in the National Center for Biotechnology Information (NCBI)'s Gene Expression Omnibus (GEO) ( GSE220807 ). ..

    Article Title: Quercetin Affects Carcinogenic Phenotype of Breast and Lung Cancer Cells Differentially Through Sterol Regulation Mediated by MALAT1 Perturbation.
    Article Snippet: Targeting MALAT1 in cancer treatment is an attractive strategy due to the undebatable role of this lncRNA in the disease.. Small molecules toward this noncoding RNA have, in fact, entered preclinical trials, without resulting in a robust demonstration in favor of their use in therapy.. To test the robustness of this method, we asked how aspects of carcinogenesis get affected when knocking down MALAT1 in different cell lines.

    Expressing:

    Article Title: Quercetin Affects Carcinogenic Phenotype of Breast and Lung Cancer Cells Differentially Through Sterol Regulation Mediated by MALAT1 Perturbation.
    Article Snippet: Targeting MALAT1 in cancer treatment is an attractive strategy due to the undebatable role of this lncRNA in the disease.. Small molecules toward this noncoding RNA have, in fact, entered preclinical trials, without resulting in a robust demonstration in favor of their use in therapy.. To test the robustness of this method, we asked how aspects of carcinogenesis get affected when knocking down MALAT1 in different cell lines.

    Article Title: A Phase Ib Trial of Copanlisib in Combination with Venetoclax in Patients with Relapsed or Refractory B-Cell Non-Hodgkin Lymphoma-SAKK 66/18 Trial.
    Article Snippet: .. Expression data will be available in the National Center for Biotechnology Information Gene Expression Omnibus (http://www.ncbi.nlm.nih.gov/geo). ..



    Similar Products

    94
    Twist Bioscience expression vector
    Expression Vector, supplied by Twist Bioscience, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/gene+expression+data/Clonal+Genes+Twist+Expression+Vector+-+Data/bio_rxiv__64898__2026__05__19__726164-218-8-14
    Average 94 stars, based on 1 article reviews
    expression vector - by Bioz Stars, 2026-11
    94/100 stars
      Buy from Supplier

    86
    Biotechnology Information gene expression omnibus public genomic data repository
    Gene Expression Omnibus Public Genomic Data Repository, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/gene+expression+data/expression+gene+omnibus+%E2%80%A2/pm42297033-150-18-16
    Average 86 stars, based on 1 article reviews
    gene expression omnibus public genomic data repository - by Bioz Stars, 2026-11
    86/100 stars
      Buy from Supplier

    86
    Human Protein Atlas gene expression data
    Gene Expression Data, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/gene+expression+data/data+expression+gene/pm42258538-351-0-7
    Average 86 stars, based on 1 article reviews
    gene expression data - by Bioz Stars, 2026-11
    86/100 stars
      Buy from Supplier

    86
    Biotechnology Information gene expression data
    Gene Expression Data, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/gene+expression+data/expression+gene+omnibus+%E2%80%A2/pmc13265312-65-0-10
    Average 86 stars, based on 1 article reviews
    gene expression data - by Bioz Stars, 2026-11
    86/100 stars
      Buy from Supplier

    86
    10X Genomics 10 × visium human tonsil gene and protein expression data

    10 × Visium Human Tonsil Gene And Protein Expression Data, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/gene+expression+data/amplification+cell+chromium+human+kit+single+tcr/pmc13174227-8-0-13
    Average 86 stars, based on 1 article reviews
    10 × visium human tonsil gene and protein expression data - by Bioz Stars, 2026-11
    86/100 stars
      Buy from Supplier

    86
    Human Protein Atlas tissue specific gene expression data
    (A) Cohen’s h values for pairwise comparisons between 𝒞 and the other two groups: ℬ and ℐ . Primate <t>Specific</t> Ratios are calculated as in . A higher absolute Cohen’s h indicates a greater difference in ratios between the two compared groups. Green bar represents ℬ , orange bar represents ℐ , and blue bars represent 𝒞 . (B) Results of Fisher’s exact tests for pairwise comparisons between each of ℬ , ℐ , and 𝒞 and each control group ( ℱ and ℛ ), together with the comparison between ℱ and ℛ . Primate Specific Ratios are calculated as in . Statistical significance is denoted by asterisks. Results with p-values less than 0.01 are indicated by two asterisks (**), results with p-values less than 0.05 are indicated by one asterisk (*), and all other results are marked as ns . Green bar represents ℬ , orange bar represents ℐ , blue bar represents 𝒞 , gray bars represent ℛ , and purple bars represent ℱ . (C) The number of tissues corresponding to each quantile for the brain <t>genes</t> and immune-related genes. Green bars represent ℬ , orange bars represent ℐ , and gray bars represent all genes that have at least one highly expressed <t>tissue</t> in Human Protein Atlas [ , ]. (D) The number and ratio of genes highly expressed specifically in brain tissues or immune-related tissues, out of 1019 brain genes and 586 immune-related genes, respectively.
    Tissue Specific Gene Expression Data, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/gene+expression+data/specific+tissue/pmc13160339-156-27-35
    Average 86 stars, based on 1 article reviews
    tissue specific gene expression data - by Bioz Stars, 2026-11
    86/100 stars
      Buy from Supplier

    86
    Biotechnology Information gene expression omnibus data base
    (A) Cohen’s h values for pairwise comparisons between 𝒞 and the other two groups: ℬ and ℐ . Primate <t>Specific</t> Ratios are calculated as in . A higher absolute Cohen’s h indicates a greater difference in ratios between the two compared groups. Green bar represents ℬ , orange bar represents ℐ , and blue bars represent 𝒞 . (B) Results of Fisher’s exact tests for pairwise comparisons between each of ℬ , ℐ , and 𝒞 and each control group ( ℱ and ℛ ), together with the comparison between ℱ and ℛ . Primate Specific Ratios are calculated as in . Statistical significance is denoted by asterisks. Results with p-values less than 0.01 are indicated by two asterisks (**), results with p-values less than 0.05 are indicated by one asterisk (*), and all other results are marked as ns . Green bar represents ℬ , orange bar represents ℐ , blue bar represents 𝒞 , gray bars represent ℛ , and purple bars represent ℱ . (C) The number of tissues corresponding to each quantile for the brain <t>genes</t> and immune-related genes. Green bars represent ℬ , orange bars represent ℐ , and gray bars represent all genes that have at least one highly expressed <t>tissue</t> in Human Protein Atlas [ , ]. (D) The number and ratio of genes highly expressed specifically in brain tissues or immune-related tissues, out of 1019 brain genes and 586 immune-related genes, respectively.
    Gene Expression Omnibus Data Base, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/gene+expression+data/center+national+%D0%B1%D0%B0%D0%B7%D0%B0%D1%85+%D0%B2+%D0%B4%D0%B0%D0%BD%D0%BD%D1%8B%D1%85+%D0%B8+%D0%BB%D0%B8%D1%82%D0%B5%D1%80%D0%B0%D1%82%D1%83%D1%80%D1%8B+%D0%BC%D0%B0%D1%82%D0%B5%D1%80%D0%B8%D0%B0%D0%BB+%D0%BC%D0%B5%D1%82%D0%BE%D0%B4%D1%8B+%D0%BD%D0%B0%D0%BC%D0%B8+%D0%BF%D0%BE%D0%B8%D1%81%D0%BA+%D0%BF%D1%80%D0%BE%D0%B2%D0%B5%D0%B4%D0%B5%D0%BD+%D1%8D%D0%BB%D0%B5%D0%BA%D1%82%D1%80%D0%BE%D0%BD%D0%BD%D1%8B%D1%85/10__3892_slash_etm__2026__13177-27-8-18
    Average 86 stars, based on 1 article reviews
    gene expression omnibus data base - by Bioz Stars, 2026-11
    86/100 stars
      Buy from Supplier

    Image Search Results


    Journal: Cell Genomics

    Article Title: MultiSP deciphers tissue structure and multicellular communication from spatial multi-omics data

    doi: 10.1016/j.xgen.2026.101141

    Figure Lengend Snippet:

    Article Snippet: 10× Visium human tonsil gene and protein expression data , 10× Genomics , https://www.10xgenomics.com/resources/datasets/gene-protein-expression-library-of-human-tonsil-cytassist-ffpe-2-standard.

    Techniques: Expressing, Software

    (A) Cohen’s h values for pairwise comparisons between 𝒞 and the other two groups: ℬ and ℐ . Primate Specific Ratios are calculated as in . A higher absolute Cohen’s h indicates a greater difference in ratios between the two compared groups. Green bar represents ℬ , orange bar represents ℐ , and blue bars represent 𝒞 . (B) Results of Fisher’s exact tests for pairwise comparisons between each of ℬ , ℐ , and 𝒞 and each control group ( ℱ and ℛ ), together with the comparison between ℱ and ℛ . Primate Specific Ratios are calculated as in . Statistical significance is denoted by asterisks. Results with p-values less than 0.01 are indicated by two asterisks (**), results with p-values less than 0.05 are indicated by one asterisk (*), and all other results are marked as ns . Green bar represents ℬ , orange bar represents ℐ , blue bar represents 𝒞 , gray bars represent ℛ , and purple bars represent ℱ . (C) The number of tissues corresponding to each quantile for the brain genes and immune-related genes. Green bars represent ℬ , orange bars represent ℐ , and gray bars represent all genes that have at least one highly expressed tissue in Human Protein Atlas [ , ]. (D) The number and ratio of genes highly expressed specifically in brain tissues or immune-related tissues, out of 1019 brain genes and 586 immune-related genes, respectively.

    Journal: PLOS One

    Article Title: Comparative genomics of human brain and immune gene preservation across species

    doi: 10.1371/journal.pone.0348713

    Figure Lengend Snippet: (A) Cohen’s h values for pairwise comparisons between 𝒞 and the other two groups: ℬ and ℐ . Primate Specific Ratios are calculated as in . A higher absolute Cohen’s h indicates a greater difference in ratios between the two compared groups. Green bar represents ℬ , orange bar represents ℐ , and blue bars represent 𝒞 . (B) Results of Fisher’s exact tests for pairwise comparisons between each of ℬ , ℐ , and 𝒞 and each control group ( ℱ and ℛ ), together with the comparison between ℱ and ℛ . Primate Specific Ratios are calculated as in . Statistical significance is denoted by asterisks. Results with p-values less than 0.01 are indicated by two asterisks (**), results with p-values less than 0.05 are indicated by one asterisk (*), and all other results are marked as ns . Green bar represents ℬ , orange bar represents ℐ , blue bar represents 𝒞 , gray bars represent ℛ , and purple bars represent ℱ . (C) The number of tissues corresponding to each quantile for the brain genes and immune-related genes. Green bars represent ℬ , orange bars represent ℐ , and gray bars represent all genes that have at least one highly expressed tissue in Human Protein Atlas [ , ]. (D) The number and ratio of genes highly expressed specifically in brain tissues or immune-related tissues, out of 1019 brain genes and 586 immune-related genes, respectively.

    Article Snippet: There are six types of data used in this work: (1) CDS (coding sequence) data of 32 primate species and 4 non-primate species [ , ]; (2) tissue specific gene expression data obtained from the Human Protein Atlas 23.0 [ , ]; (3) 1360 human genes highly expressed in the brain or the immune system [ , ]; (4) 295 random human genes selected using the random.sample() function in Python 3.10.8; (5) 369 human genes each from a distinct HGNC [ ] gene family group; and (6) protein sequences of the genes obtained from UniProt [ ].

    Techniques: Control, Comparison