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SourceForge net resting-state fmri data analysis toolkit
Resting State Fmri Data Analysis Toolkit, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/fmri+data+preprocessing/resting+state+fmri+data+analysis+toolkit/pmc05054000-123-5-12
Average 90 stars, based on 1 article reviews
resting-state fmri data analysis toolkit - by Bioz Stars, 2026-09
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Software:

Article Title: Changes in Functional Connectivity Between Default Mode Network and Attention Network in Response to Changes in Aerobic Exercise Intensity
Article Snippet: Data were preprocessed and processed using the Data Processing Assistant for Resting-State fMRI (DPARSFA; http://restfmri.net/forum ), a plug-in software that works with Statistical Parametric Mapping (SPM12; http://www.fil.ion.ucl.ac.uk/spm/software/spm12/ ) and the Resting-State fMRI Data Analysis Toolkit (REST; http://resting-fmri.sourceforge.net ).

Article Title: Amplitude of Low-Frequency Oscillations in First-Episode Drug-Naive Patients with Major Depressive Disorder: A Resting State Functional Magnetic Resonance Imaging Study
Article Snippet: ALFF was calculated using the Resting-State fMRI Data Analysis Toolkit (REST) version 1.8 ( http://resting-fmri.sourceforge.net ).

Article Title: RP-Rs-fMRIomics as a Novel Imaging Analysis Strategy to Empower Diagnosis of Brain Gliomas
Article Snippet: ReHo and ALFF analyses were performed using rs-fMRI Data Analysis Toolkit ( http://resting-fmri.sourceforge.net (accessed on 8 April 2021)), while HE and TSA were calculated using an in-house toolkit in line with methods in Lei et al. [ ] and Lv et al. [ ].

Article Title: Relationship between blood amyloid A and resting magnetic resonance functional brain connections in patients with obstructive sleep apnea–hypopnea syndrome
Article Snippet: Resting-state fMRI Data Analysis Toolkit ( http://resting-fMRI.sourceforge.net ) was used to extract BOLD sequence in the resting region of interest, and voxelwise was applied to do correlation analysis with other regions of DMN, so as to obtain brain regions with significant connections to region of interest.

Article Title: Comparison of attention and brain functional connectivity between patient groups with schizophrenia and attention deficit hyperactivity disorder.
Article Snippet: Schizophrenia and attention deficit hyperactivity disorder (ADHD) have many contradicting features, but both these disorders share inattention as a core symptom.. This study explored how the characteristics of inattention differ between the two disorders.. 20 patients with schizophrenia, 20 patients with adult ADHD and 20 healthy controls participated in this study.

Article Title: Effects of Methylphenidate on Somatic Symptoms and Brain Functional Connectivity in Adolescents with Attention Deficit Hyperactivity Disorder: A Pilot Study
Article Snippet: Data preprocessing and processing were conducted using the Data Processing Assistant for Resting-State fMRI (DPARSF; http://www.restfmri.net ), which is a plug-in software compatible with statistical parametric mapping (SPM12; http://www.fil.ion.ucl.ac.uk/spm/software/spm12/ ) and the Resting-State fMRI Data Analysis Toolkit (REST; http://resting-fmri.sourceforge.net ).

Article Title: Cognitive impairment assessed by static and dynamic changes of spontaneous brain activity during end stage renal disease patients on early hemodialysis
Article Snippet: Mean sReHo and dReHo values for all voxels differing significantly were extracted separately using the resting-state fMRI Data Analysis Toolkit (REST; http://resting-fmri.sourceforge.net ).

Article Title: Abnormal resting-state functional connectivity of the insula in medication-free patients with obsessive-compulsive disorder
Article Snippet: Fig. 1 The seed region of the insula per hemisphere in the Anatomical Automatic Labeling (AAL) atlas Seed-based resting-state functional connectivity analysis was performed using the Resting-State fMRI Data Analysis Toolkit software package (RESTplus, version 1.24, http://resting-fmri.sourceforge.net . sourceforge.net).

Functional Assay:

Article Title: Changes in Functional Connectivity Between Default Mode Network and Attention Network in Response to Changes in Aerobic Exercise Intensity
Article Snippet: Data were preprocessed and processed using the Data Processing Assistant for Resting-State fMRI (DPARSFA; http://restfmri.net/forum ), a plug-in software that works with Statistical Parametric Mapping (SPM12; http://www.fil.ion.ucl.ac.uk/spm/software/spm12/ ) and the Resting-State fMRI Data Analysis Toolkit (REST; http://resting-fmri.sourceforge.net ).

Article Title: Amplitude of Low-Frequency Oscillations in First-Episode Drug-Naive Patients with Major Depressive Disorder: A Resting State Functional Magnetic Resonance Imaging Study
Article Snippet: ALFF was calculated using the Resting-State fMRI Data Analysis Toolkit (REST) version 1.8 ( http://resting-fmri.sourceforge.net ).

Article Title: RP-Rs-fMRIomics as a Novel Imaging Analysis Strategy to Empower Diagnosis of Brain Gliomas
Article Snippet: ReHo and ALFF analyses were performed using rs-fMRI Data Analysis Toolkit ( http://resting-fmri.sourceforge.net (accessed on 8 April 2021)), while HE and TSA were calculated using an in-house toolkit in line with methods in Lei et al. [ ] and Lv et al. [ ].

Article Title: Relationship between blood amyloid A and resting magnetic resonance functional brain connections in patients with obstructive sleep apnea–hypopnea syndrome
Article Snippet: Resting-state fMRI Data Analysis Toolkit ( http://resting-fMRI.sourceforge.net ) was used to extract BOLD sequence in the resting region of interest, and voxelwise was applied to do correlation analysis with other regions of DMN, so as to obtain brain regions with significant connections to region of interest.

Article Title: Comparison of attention and brain functional connectivity between patient groups with schizophrenia and attention deficit hyperactivity disorder.
Article Snippet: Schizophrenia and attention deficit hyperactivity disorder (ADHD) have many contradicting features, but both these disorders share inattention as a core symptom.. This study explored how the characteristics of inattention differ between the two disorders.. 20 patients with schizophrenia, 20 patients with adult ADHD and 20 healthy controls participated in this study.

Article Title: Effects of Methylphenidate on Somatic Symptoms and Brain Functional Connectivity in Adolescents with Attention Deficit Hyperactivity Disorder: A Pilot Study
Article Snippet: Data preprocessing and processing were conducted using the Data Processing Assistant for Resting-State fMRI (DPARSF; http://www.restfmri.net ), which is a plug-in software compatible with statistical parametric mapping (SPM12; http://www.fil.ion.ucl.ac.uk/spm/software/spm12/ ) and the Resting-State fMRI Data Analysis Toolkit (REST; http://resting-fmri.sourceforge.net ).

Article Title: Cognitive impairment assessed by static and dynamic changes of spontaneous brain activity during end stage renal disease patients on early hemodialysis
Article Snippet: Mean sReHo and dReHo values for all voxels differing significantly were extracted separately using the resting-state fMRI Data Analysis Toolkit (REST; http://resting-fmri.sourceforge.net ).

Article Title: Abnormal resting-state functional connectivity of the insula in medication-free patients with obsessive-compulsive disorder
Article Snippet: Fig. 1 The seed region of the insula per hemisphere in the Anatomical Automatic Labeling (AAL) atlas Seed-based resting-state functional connectivity analysis was performed using the Resting-State fMRI Data Analysis Toolkit software package (RESTplus, version 1.24, http://resting-fmri.sourceforge.net . sourceforge.net).

Magnetic Resonance Imaging:

Article Title: Changes in Functional Connectivity Between Default Mode Network and Attention Network in Response to Changes in Aerobic Exercise Intensity
Article Snippet: Data were preprocessed and processed using the Data Processing Assistant for Resting-State fMRI (DPARSFA; http://restfmri.net/forum ), a plug-in software that works with Statistical Parametric Mapping (SPM12; http://www.fil.ion.ucl.ac.uk/spm/software/spm12/ ) and the Resting-State fMRI Data Analysis Toolkit (REST; http://resting-fmri.sourceforge.net ).

Article Title: Amplitude of Low-Frequency Oscillations in First-Episode Drug-Naive Patients with Major Depressive Disorder: A Resting State Functional Magnetic Resonance Imaging Study
Article Snippet: ALFF was calculated using the Resting-State fMRI Data Analysis Toolkit (REST) version 1.8 ( http://resting-fmri.sourceforge.net ).

Article Title: RP-Rs-fMRIomics as a Novel Imaging Analysis Strategy to Empower Diagnosis of Brain Gliomas
Article Snippet: ReHo and ALFF analyses were performed using rs-fMRI Data Analysis Toolkit ( http://resting-fmri.sourceforge.net (accessed on 8 April 2021)), while HE and TSA were calculated using an in-house toolkit in line with methods in Lei et al. [ ] and Lv et al. [ ].

Article Title: Relationship between blood amyloid A and resting magnetic resonance functional brain connections in patients with obstructive sleep apnea–hypopnea syndrome
Article Snippet: Resting-state fMRI Data Analysis Toolkit ( http://resting-fMRI.sourceforge.net ) was used to extract BOLD sequence in the resting region of interest, and voxelwise was applied to do correlation analysis with other regions of DMN, so as to obtain brain regions with significant connections to region of interest.

Article Title: Comparison of attention and brain functional connectivity between patient groups with schizophrenia and attention deficit hyperactivity disorder.
Article Snippet: Schizophrenia and attention deficit hyperactivity disorder (ADHD) have many contradicting features, but both these disorders share inattention as a core symptom.. This study explored how the characteristics of inattention differ between the two disorders.. 20 patients with schizophrenia, 20 patients with adult ADHD and 20 healthy controls participated in this study.

Article Title: Effects of Methylphenidate on Somatic Symptoms and Brain Functional Connectivity in Adolescents with Attention Deficit Hyperactivity Disorder: A Pilot Study
Article Snippet: Data preprocessing and processing were conducted using the Data Processing Assistant for Resting-State fMRI (DPARSF; http://www.restfmri.net ), which is a plug-in software compatible with statistical parametric mapping (SPM12; http://www.fil.ion.ucl.ac.uk/spm/software/spm12/ ) and the Resting-State fMRI Data Analysis Toolkit (REST; http://resting-fmri.sourceforge.net ).

Article Title: Cognitive impairment assessed by static and dynamic changes of spontaneous brain activity during end stage renal disease patients on early hemodialysis
Article Snippet: Mean sReHo and dReHo values for all voxels differing significantly were extracted separately using the resting-state fMRI Data Analysis Toolkit (REST; http://resting-fmri.sourceforge.net ).

Article Title: Abnormal resting-state functional connectivity of the insula in medication-free patients with obsessive-compulsive disorder
Article Snippet: Fig. 1 The seed region of the insula per hemisphere in the Anatomical Automatic Labeling (AAL) atlas Seed-based resting-state functional connectivity analysis was performed using the Resting-State fMRI Data Analysis Toolkit software package (RESTplus, version 1.24, http://resting-fmri.sourceforge.net . sourceforge.net).

Labeling:

Article Title: Changes in Functional Connectivity Between Default Mode Network and Attention Network in Response to Changes in Aerobic Exercise Intensity
Article Snippet: Data were preprocessed and processed using the Data Processing Assistant for Resting-State fMRI (DPARSFA; http://restfmri.net/forum ), a plug-in software that works with Statistical Parametric Mapping (SPM12; http://www.fil.ion.ucl.ac.uk/spm/software/spm12/ ) and the Resting-State fMRI Data Analysis Toolkit (REST; http://resting-fmri.sourceforge.net ).

Article Title: Amplitude of Low-Frequency Oscillations in First-Episode Drug-Naive Patients with Major Depressive Disorder: A Resting State Functional Magnetic Resonance Imaging Study
Article Snippet: ALFF was calculated using the Resting-State fMRI Data Analysis Toolkit (REST) version 1.8 ( http://resting-fmri.sourceforge.net ).

Article Title: RP-Rs-fMRIomics as a Novel Imaging Analysis Strategy to Empower Diagnosis of Brain Gliomas
Article Snippet: ReHo and ALFF analyses were performed using rs-fMRI Data Analysis Toolkit ( http://resting-fmri.sourceforge.net (accessed on 8 April 2021)), while HE and TSA were calculated using an in-house toolkit in line with methods in Lei et al. [ ] and Lv et al. [ ].

Article Title: Relationship between blood amyloid A and resting magnetic resonance functional brain connections in patients with obstructive sleep apnea–hypopnea syndrome
Article Snippet: Resting-state fMRI Data Analysis Toolkit ( http://resting-fMRI.sourceforge.net ) was used to extract BOLD sequence in the resting region of interest, and voxelwise was applied to do correlation analysis with other regions of DMN, so as to obtain brain regions with significant connections to region of interest.

Article Title: Comparison of attention and brain functional connectivity between patient groups with schizophrenia and attention deficit hyperactivity disorder.
Article Snippet: Schizophrenia and attention deficit hyperactivity disorder (ADHD) have many contradicting features, but both these disorders share inattention as a core symptom.. This study explored how the characteristics of inattention differ between the two disorders.. 20 patients with schizophrenia, 20 patients with adult ADHD and 20 healthy controls participated in this study.

Article Title: Effects of Methylphenidate on Somatic Symptoms and Brain Functional Connectivity in Adolescents with Attention Deficit Hyperactivity Disorder: A Pilot Study
Article Snippet: Data preprocessing and processing were conducted using the Data Processing Assistant for Resting-State fMRI (DPARSF; http://www.restfmri.net ), which is a plug-in software compatible with statistical parametric mapping (SPM12; http://www.fil.ion.ucl.ac.uk/spm/software/spm12/ ) and the Resting-State fMRI Data Analysis Toolkit (REST; http://resting-fmri.sourceforge.net ).

Article Title: Cognitive impairment assessed by static and dynamic changes of spontaneous brain activity during end stage renal disease patients on early hemodialysis
Article Snippet: Mean sReHo and dReHo values for all voxels differing significantly were extracted separately using the resting-state fMRI Data Analysis Toolkit (REST; http://resting-fmri.sourceforge.net ).

Article Title: Abnormal resting-state functional connectivity of the insula in medication-free patients with obsessive-compulsive disorder
Article Snippet: Fig. 1 The seed region of the insula per hemisphere in the Anatomical Automatic Labeling (AAL) atlas Seed-based resting-state functional connectivity analysis was performed using the Resting-State fMRI Data Analysis Toolkit software package (RESTplus, version 1.24, http://resting-fmri.sourceforge.net . sourceforge.net).



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Image Search Results


Figure 1. The schematic illustration of the main method. (A) The procedures to obtain multiscale FCNs. (i) the fMRI data from one individual is inputted and preprocessed. (ii) The application of the Schaefer’s multiscale atlases to the fMRI data. The black border lines indicate boundaries of ROIs and the colors encode the resting-state network (RSN) to which the ROI belongs. The RSNs include DMN, frontoparietal network (FP), limbic network (LIM), salience network (SAL), attention network (ATT), somatomotor network (SM), and visual network (VIS). (iii) The extraction of ROI-averaged signals. (iv) The construction of multiscale FCNs from individual fMRI data. (B) The architecture for multiscale atlas-based GCN (MAGCN). The multiscale FCNs are extracted via a series of GCNs connected by the APs. The nodal features h are integrated with skip connections and concatenations, based on which individualized diagnosis is generated.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Article Title: Multiscale functional connectome abnormality predicts cognitive outcomes in subcortical ischemic vascular disease.

doi: 10.1093/cercor/bhab507

Figure Lengend Snippet: Figure 1. The schematic illustration of the main method. (A) The procedures to obtain multiscale FCNs. (i) the fMRI data from one individual is inputted and preprocessed. (ii) The application of the Schaefer’s multiscale atlases to the fMRI data. The black border lines indicate boundaries of ROIs and the colors encode the resting-state network (RSN) to which the ROI belongs. The RSNs include DMN, frontoparietal network (FP), limbic network (LIM), salience network (SAL), attention network (ATT), somatomotor network (SM), and visual network (VIS). (iii) The extraction of ROI-averaged signals. (iv) The construction of multiscale FCNs from individual fMRI data. (B) The architecture for multiscale atlas-based GCN (MAGCN). The multiscale FCNs are extracted via a series of GCNs connected by the APs. The nodal features h are integrated with skip connections and concatenations, based on which individualized diagnosis is generated.

Article Snippet: The sagittal T1-weighted images covering the whole brain were acquired by a 3Dfast spoiled gradient recalled echo sequence: TR = 5.6 ms, TE = 1.8 ms, matrix = 256 × 256, inversion time = 450 ms, flip angle = 15◦, slice thickness/gap = 1/0 mm, number of slices = 156, gap = 0, and FOV = 256 × 256 mm2. fMRI Data Preprocessing We adopt the standardized pipeline from the public available toolbox Data Processing Assistant for Resting-State fMRI (Yan and Zang 2010) in Matlab (Mathworks.

Techniques: Extraction, Biomarker Discovery, Generated