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empty pgadt7 vector  (TaKaRa)


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    TaKaRa empty pgadt7 vector
    Empty Pgadt7 Vector, supplied by TaKaRa, used in various techniques. Bioz Stars score: 99/100, based on 4006 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/empty+vector+pgadt7/pGADT7+AD+Vector/pmc13161086-261-5-36
    Average 99 stars, based on 4006 article reviews
    empty pgadt7 vector - by Bioz Stars, 2026-11
    99/100 stars

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    Related Articles

    cDNA Library Assay:

    Article Title: Screening human brain targets for Japanese encephalitis virus NS5 via yeast two-hybrid assay.
    Article Snippet: The recombinant pGBKT7-JEV NS5 and the empty pGBKT7 plasmids were transformed into the Y2HGold yeast strain using a highefficiency polyethylene glycol (PEG)/LiAc-based method (Clontech, USA) and spread on the following plates; minimal yeast medium without tryptophan (SD/-Trp), SD/-Trp supplemented with 40 μg/mL X-alpha-Gal (SD/-Trp/X), and SD/-Trp supplemented with 40 μg/mL X-alpha-Gal and 125 ng/mL Aureobasidin A (SD/-Trp/X/A) and incubated for 3-5 days. .. Preparation of human brain cDNA library strain Human brain prey coding sequences were recombined into pGADT7 (Takara Bio, California, USA) to be expressed in fusion downstream of the activation domain of Gal4 (Gal4-AD) and transformed into prey Y187 yeast strains (Paiano et al., 2019). .. Recombinant gene synthesis and laboratory confirmation The synthesis of the bait construct (pGBKT7-NS5) was synthesized by a commercial provider (Integrated DNA Technologies, Singapore) and confirmed via PCR using specific primers (Table 1) and MyTaq Red Mix reagent (Meridian Bioscience, London, United Kingdom).

    Article Title: Daam-, FMNL-, and mDia-family formins jointly regulate cortical actin dynamics in melanoma cells.
    Article Snippet: .. The cDNAs encoding murine FHOD1-GBD/FH3 (Uniprot ID:Q6P9Q4, residues 53–462), FMNL2-GBD/FH3 (Uniprot ID:A2APV2-3, residues 23–469), FMNL3-GBD/FH3 (Uniprot ID:Q6ZPF4-1, residues 26–472), and Daam1-GBD/FH3 (Uniprot ID:Q8BPM0-2, residues 45–420) were amplified from the B16-F1 cDNA library and inserted into the BamHI and XhoI sites of plasmid pGADT7 (Clontech), and the amplified GBD/FH3 region of murine Daam2 (Uniprot ID:Q80U19, residues 40–420) was inserted into the XmaI and XhoI sites of pGADT7 to generate the bait plasmids. .. For expression of constitutively-active and dominantnegative GTPases in E. coli, the coding sequences were amplified from the constructs mentioned above and inserted either into the BamHI and SalI sites (RhoA, RhoC, RhoD, Rac1, and Cdc42) or into the SalI and NotI sites (RhoB and Rif ) of plasmid pGEX6-P-3 (GE Healthcare).

    Article Title: A novel CsRNF‐CsHSF24‐ CsF3′5′H2 module regulates epigallocatechin gallate biosynthesis in Camellia sinensis
    Article Snippet: .. A cDNA library was constructed from tea plant (FDDB) leaf mRNA in the pGADT7 prey vector (Clontech). ..

    Activation Assay:

    Article Title: Screening human brain targets for Japanese encephalitis virus NS5 via yeast two-hybrid assay.
    Article Snippet: The recombinant pGBKT7-JEV NS5 and the empty pGBKT7 plasmids were transformed into the Y2HGold yeast strain using a highefficiency polyethylene glycol (PEG)/LiAc-based method (Clontech, USA) and spread on the following plates; minimal yeast medium without tryptophan (SD/-Trp), SD/-Trp supplemented with 40 μg/mL X-alpha-Gal (SD/-Trp/X), and SD/-Trp supplemented with 40 μg/mL X-alpha-Gal and 125 ng/mL Aureobasidin A (SD/-Trp/X/A) and incubated for 3-5 days. .. Preparation of human brain cDNA library strain Human brain prey coding sequences were recombined into pGADT7 (Takara Bio, California, USA) to be expressed in fusion downstream of the activation domain of Gal4 (Gal4-AD) and transformed into prey Y187 yeast strains (Paiano et al., 2019). .. Recombinant gene synthesis and laboratory confirmation The synthesis of the bait construct (pGBKT7-NS5) was synthesized by a commercial provider (Integrated DNA Technologies, Singapore) and confirmed via PCR using specific primers (Table 1) and MyTaq Red Mix reagent (Meridian Bioscience, London, United Kingdom).

    Article Title: Three PRR proteins interact with ARF10 and ARF16 to enhance ABI5 activation and auxin-stimulated ABA responses during Arabidopsis seed germination.
    Article Snippet: 950 951 Y2H assays 952 The full-length PRR5 CDS were inserted into pGBKT7 vector (Clontech) to produce 953 the bait vector (BD-PRR5) containing the Gal4 DNA-binding domain. .. The full-length 954 ARF16 CDS were incorporated into pGADT7 vector (Clontech) to generate the prey 955 vector (AD-ARF16) containing the Gal4 activation domain. ..

    Article Title: WSSV355 enhances IDH1 enzymatic activity and promotes efficient WSSV replication.
    Article Snippet: Jo ur na l P re -p ro of Journal Pre-proof 2 White spot syndrome virus (WSSV) drives extensive metabolic reprogramming to support viral replication, including activation of reductive carboxylation, a pathway in which host isocitrate dehydrogenase 1 (IDH1) has a central role.. However, the mechanisms by which viral factors regulate IDH1 and associated metabolic networks remain unclear.. Here, we identified WSSV355 as a key viral regulator that contributed to IDH1 binding and activation during infection.

    Transformation Assay:

    Article Title: Screening human brain targets for Japanese encephalitis virus NS5 via yeast two-hybrid assay.
    Article Snippet: The recombinant pGBKT7-JEV NS5 and the empty pGBKT7 plasmids were transformed into the Y2HGold yeast strain using a highefficiency polyethylene glycol (PEG)/LiAc-based method (Clontech, USA) and spread on the following plates; minimal yeast medium without tryptophan (SD/-Trp), SD/-Trp supplemented with 40 μg/mL X-alpha-Gal (SD/-Trp/X), and SD/-Trp supplemented with 40 μg/mL X-alpha-Gal and 125 ng/mL Aureobasidin A (SD/-Trp/X/A) and incubated for 3-5 days. .. Preparation of human brain cDNA library strain Human brain prey coding sequences were recombined into pGADT7 (Takara Bio, California, USA) to be expressed in fusion downstream of the activation domain of Gal4 (Gal4-AD) and transformed into prey Y187 yeast strains (Paiano et al., 2019). .. Recombinant gene synthesis and laboratory confirmation The synthesis of the bait construct (pGBKT7-NS5) was synthesized by a commercial provider (Integrated DNA Technologies, Singapore) and confirmed via PCR using specific primers (Table 1) and MyTaq Red Mix reagent (Meridian Bioscience, London, United Kingdom).

    Article Title: Phosphorylation of the plant photoreceptor UVR8 regulates its dimer/monomer status and enhances UV-B signaling across species.
    Article Snippet: Yeast two-hybrid and three-hybrid assays The UVR8, UVR8T356A, and UVR8T356D coding sequences were cloned into pGBKT7 and transformed into the Y2H Gold strain (Clontech). .. The UVR8, UVR8T356A, UVR8T356D, COP1, and RUP2 sequences were cloned into pGADT7 and transformed into the Y187 strain (Clontech). ..

    Yeast:

    Article Title: Screening human brain targets for Japanese encephalitis virus NS5 via yeast two-hybrid assay.
    Article Snippet: The recombinant pGBKT7-JEV NS5 and the empty pGBKT7 plasmids were transformed into the Y2HGold yeast strain using a highefficiency polyethylene glycol (PEG)/LiAc-based method (Clontech, USA) and spread on the following plates; minimal yeast medium without tryptophan (SD/-Trp), SD/-Trp supplemented with 40 μg/mL X-alpha-Gal (SD/-Trp/X), and SD/-Trp supplemented with 40 μg/mL X-alpha-Gal and 125 ng/mL Aureobasidin A (SD/-Trp/X/A) and incubated for 3-5 days. .. Preparation of human brain cDNA library strain Human brain prey coding sequences were recombined into pGADT7 (Takara Bio, California, USA) to be expressed in fusion downstream of the activation domain of Gal4 (Gal4-AD) and transformed into prey Y187 yeast strains (Paiano et al., 2019). .. Recombinant gene synthesis and laboratory confirmation The synthesis of the bait construct (pGBKT7-NS5) was synthesized by a commercial provider (Integrated DNA Technologies, Singapore) and confirmed via PCR using specific primers (Table 1) and MyTaq Red Mix reagent (Meridian Bioscience, London, United Kingdom).

    Article Title: Identification of GEI-14 as a candidate pro-crossover factor by TurboID in C. elegans
    Article Snippet: .. For yeast two-hybrid assays, full-length coding sequences for GEI-14 and known pro-crossover factors ( CDK-2 , COSA-1 /COSA-1-6A, MSH-4, MSH-5 , ZHP-3 ) were cloned into plasmid pGADT7 (Takara Bio, 630442) or pGBKT7 (Takara Bio, 630443). .. Each bait and prey plasmid pair was co-transformed into yeast strain AH109 (Coolaber, CC300).

    Plasmid Preparation:

    Article Title: Three PRR proteins interact with ARF10 and ARF16 to enhance ABI5 activation and auxin-stimulated ABA responses during Arabidopsis seed germination.
    Article Snippet: 950 951 Y2H assays 952 The full-length PRR5 CDS were inserted into pGBKT7 vector (Clontech) to produce 953 the bait vector (BD-PRR5) containing the Gal4 DNA-binding domain. .. The full-length 954 ARF16 CDS were incorporated into pGADT7 vector (Clontech) to generate the prey 955 vector (AD-ARF16) containing the Gal4 activation domain. ..

    Article Title: WSSV355 enhances IDH1 enzymatic activity and promotes efficient WSSV replication.
    Article Snippet: Jo ur na l P re -p ro of Journal Pre-proof 2 White spot syndrome virus (WSSV) drives extensive metabolic reprogramming to support viral replication, including activation of reductive carboxylation, a pathway in which host isocitrate dehydrogenase 1 (IDH1) has a central role.. However, the mechanisms by which viral factors regulate IDH1 and associated metabolic networks remain unclear.. Here, we identified WSSV355 as a key viral regulator that contributed to IDH1 binding and activation during infection.

    Article Title: Identification of GEI-14 as a candidate pro-crossover factor by TurboID in C. elegans
    Article Snippet: .. For yeast two-hybrid assays, full-length coding sequences for GEI-14 and known pro-crossover factors ( CDK-2 , COSA-1 /COSA-1-6A, MSH-4, MSH-5 , ZHP-3 ) were cloned into plasmid pGADT7 (Takara Bio, 630442) or pGBKT7 (Takara Bio, 630443). .. Each bait and prey plasmid pair was co-transformed into yeast strain AH109 (Coolaber, CC300).

    Article Title: MdAGL29 positively regulates MdBRC1/2 and negatively controls shoot branching in apple.
    Article Snippet: Key message The MADS-box transcription factor MdAGL29 serves as a negative regulator of branching in apple by modulating MdBRC1/2 expression.. Abstract Branch number is one of the major determinants in apple tree architecture.. MdAGL29, a member of the MADS-box transcription factor family, is downregulated by 6-benzylaminopurine, a synthetic cytokinin.

    Article Title: Daam-, FMNL-, and mDia-family formins jointly regulate cortical actin dynamics in melanoma cells.
    Article Snippet: .. The cDNAs encoding murine FHOD1-GBD/FH3 (Uniprot ID:Q6P9Q4, residues 53–462), FMNL2-GBD/FH3 (Uniprot ID:A2APV2-3, residues 23–469), FMNL3-GBD/FH3 (Uniprot ID:Q6ZPF4-1, residues 26–472), and Daam1-GBD/FH3 (Uniprot ID:Q8BPM0-2, residues 45–420) were amplified from the B16-F1 cDNA library and inserted into the BamHI and XhoI sites of plasmid pGADT7 (Clontech), and the amplified GBD/FH3 region of murine Daam2 (Uniprot ID:Q80U19, residues 40–420) was inserted into the XmaI and XhoI sites of pGADT7 to generate the bait plasmids. .. For expression of constitutively-active and dominantnegative GTPases in E. coli, the coding sequences were amplified from the constructs mentioned above and inserted either into the BamHI and SalI sites (RhoA, RhoC, RhoD, Rac1, and Cdc42) or into the SalI and NotI sites (RhoB and Rif ) of plasmid pGEX6-P-3 (GE Healthcare).

    Article Title: A novel CsRNF‐CsHSF24‐ CsF3′5′H2 module regulates epigallocatechin gallate biosynthesis in Camellia sinensis
    Article Snippet: .. A cDNA library was constructed from tea plant (FDDB) leaf mRNA in the pGADT7 prey vector (Clontech). ..

    Construct:

    Article Title: WSSV355 enhances IDH1 enzymatic activity and promotes efficient WSSV replication.
    Article Snippet: Jo ur na l P re -p ro of Journal Pre-proof 2 White spot syndrome virus (WSSV) drives extensive metabolic reprogramming to support viral replication, including activation of reductive carboxylation, a pathway in which host isocitrate dehydrogenase 1 (IDH1) has a central role.. However, the mechanisms by which viral factors regulate IDH1 and associated metabolic networks remain unclear.. Here, we identified WSSV355 as a key viral regulator that contributed to IDH1 binding and activation during infection.

    Article Title: MdAGL29 positively regulates MdBRC1/2 and negatively controls shoot branching in apple.
    Article Snippet: Key message The MADS-box transcription factor MdAGL29 serves as a negative regulator of branching in apple by modulating MdBRC1/2 expression.. Abstract Branch number is one of the major determinants in apple tree architecture.. MdAGL29, a member of the MADS-box transcription factor family, is downregulated by 6-benzylaminopurine, a synthetic cytokinin.

    Article Title: A novel CsRNF‐CsHSF24‐ CsF3′5′H2 module regulates epigallocatechin gallate biosynthesis in Camellia sinensis
    Article Snippet: .. A cDNA library was constructed from tea plant (FDDB) leaf mRNA in the pGADT7 prey vector (Clontech). ..

    Clone Assay:

    Article Title: Identification of GEI-14 as a candidate pro-crossover factor by TurboID in C. elegans
    Article Snippet: .. For yeast two-hybrid assays, full-length coding sequences for GEI-14 and known pro-crossover factors ( CDK-2 , COSA-1 /COSA-1-6A, MSH-4, MSH-5 , ZHP-3 ) were cloned into plasmid pGADT7 (Takara Bio, 630442) or pGBKT7 (Takara Bio, 630443). .. Each bait and prey plasmid pair was co-transformed into yeast strain AH109 (Coolaber, CC300).

    Article Title: MdAGL29 positively regulates MdBRC1/2 and negatively controls shoot branching in apple.
    Article Snippet: Key message The MADS-box transcription factor MdAGL29 serves as a negative regulator of branching in apple by modulating MdBRC1/2 expression.. Abstract Branch number is one of the major determinants in apple tree architecture.. MdAGL29, a member of the MADS-box transcription factor family, is downregulated by 6-benzylaminopurine, a synthetic cytokinin.

    Article Title: Phosphorylation of the plant photoreceptor UVR8 regulates its dimer/monomer status and enhances UV-B signaling across species.
    Article Snippet: Yeast two-hybrid and three-hybrid assays The UVR8, UVR8T356A, and UVR8T356D coding sequences were cloned into pGBKT7 and transformed into the Y2H Gold strain (Clontech). .. The UVR8, UVR8T356A, UVR8T356D, COP1, and RUP2 sequences were cloned into pGADT7 and transformed into the Y187 strain (Clontech). ..

    Sequencing:

    Article Title: MdAGL29 positively regulates MdBRC1/2 and negatively controls shoot branching in apple.
    Article Snippet: Key message The MADS-box transcription factor MdAGL29 serves as a negative regulator of branching in apple by modulating MdBRC1/2 expression.. Abstract Branch number is one of the major determinants in apple tree architecture.. MdAGL29, a member of the MADS-box transcription factor family, is downregulated by 6-benzylaminopurine, a synthetic cytokinin.

    Amplification:

    Article Title: MdAGL29 positively regulates MdBRC1/2 and negatively controls shoot branching in apple.
    Article Snippet: Key message The MADS-box transcription factor MdAGL29 serves as a negative regulator of branching in apple by modulating MdBRC1/2 expression.. Abstract Branch number is one of the major determinants in apple tree architecture.. MdAGL29, a member of the MADS-box transcription factor family, is downregulated by 6-benzylaminopurine, a synthetic cytokinin.

    Article Title: Daam-, FMNL-, and mDia-family formins jointly regulate cortical actin dynamics in melanoma cells.
    Article Snippet: .. The cDNAs encoding murine FHOD1-GBD/FH3 (Uniprot ID:Q6P9Q4, residues 53–462), FMNL2-GBD/FH3 (Uniprot ID:A2APV2-3, residues 23–469), FMNL3-GBD/FH3 (Uniprot ID:Q6ZPF4-1, residues 26–472), and Daam1-GBD/FH3 (Uniprot ID:Q8BPM0-2, residues 45–420) were amplified from the B16-F1 cDNA library and inserted into the BamHI and XhoI sites of plasmid pGADT7 (Clontech), and the amplified GBD/FH3 region of murine Daam2 (Uniprot ID:Q80U19, residues 40–420) was inserted into the XmaI and XhoI sites of pGADT7 to generate the bait plasmids. .. For expression of constitutively-active and dominantnegative GTPases in E. coli, the coding sequences were amplified from the constructs mentioned above and inserted either into the BamHI and SalI sites (RhoA, RhoC, RhoD, Rac1, and Cdc42) or into the SalI and NotI sites (RhoB and Rif ) of plasmid pGEX6-P-3 (GE Healthcare).



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    Analysis of the interaction between LrWRKY3 and LrDef1 promoter. a EMSA revealed that the LrWRKY3 specifically bound to W box. 1, reaction solution containing only free probes; 2, LrWRKY3 can interact with biotin labelled probes containing the W box sequence; 3, LrWRKY3 can both interact with biotin labelled probes containing the W box sequence and unlabeled probes containing the W box sequence; 4, LrWRKY3 can’t interact with mutant probes; Complex: the combination of LrWRKY3 recombinant protein and probes; Free probe: the unbound probes. b Analysis of the transactivation effect of LrWRKY3 on LrDef1 promoter. LrWRKY3 + pLrDef1 : transcriptional activity analysis of <t>pGADT7-</t> LrWRKY3 interaction with pLrDef1 ; Positive control: pGADT7- p53 can interact with pAbAi- p53 as a positive control; Negative control: pAbAi empty vector was used a negative control. c GUS activity was higher in transgenic tobacco lines co-expressing of LrWRKY3 and LrDef1 promoter than in the transgenic tobacco lines expressing of LrDef1 promoter. The results were shown as average values calculated from three replicates and calculated by the 2 -ΔΔCt method and analyzed by the Student’s t test. pBI121: pBI121- GUS transgenic tobacco; PD-2/3/7/10: pLrDef1 transgenic tobacco lines. Co-1/7/9/12: LrWRKY3 / pLrDef1 transgenic tobacco lines
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    Analysis of the interaction between LrWRKY3 and LrDef1 promoter. a EMSA revealed that the LrWRKY3 specifically bound to W box. 1, reaction solution containing only free probes; 2, LrWRKY3 can interact with biotin labelled probes containing the W box sequence; 3, LrWRKY3 can both interact with biotin labelled probes containing the W box sequence and unlabeled probes containing the W box sequence; 4, LrWRKY3 can’t interact with mutant probes; Complex: the combination of LrWRKY3 recombinant protein and probes; Free probe: the unbound probes. b Analysis of the transactivation effect of LrWRKY3 on LrDef1 promoter. LrWRKY3 + pLrDef1 : transcriptional activity analysis of <t>pGADT7-</t> LrWRKY3 interaction with pLrDef1 ; Positive control: pGADT7- p53 can interact with pAbAi- p53 as a positive control; Negative control: pAbAi empty vector was used a negative control. c GUS activity was higher in transgenic tobacco lines co-expressing of LrWRKY3 and LrDef1 promoter than in the transgenic tobacco lines expressing of LrDef1 promoter. The results were shown as average values calculated from three replicates and calculated by the 2 -ΔΔCt method and analyzed by the Student’s t test. pBI121: pBI121- GUS transgenic tobacco; PD-2/3/7/10: pLrDef1 transgenic tobacco lines. Co-1/7/9/12: LrWRKY3 / pLrDef1 transgenic tobacco lines
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    Image Search Results


    Analysis of the interaction between LrWRKY3 and LrDef1 promoter. a EMSA revealed that the LrWRKY3 specifically bound to W box. 1, reaction solution containing only free probes; 2, LrWRKY3 can interact with biotin labelled probes containing the W box sequence; 3, LrWRKY3 can both interact with biotin labelled probes containing the W box sequence and unlabeled probes containing the W box sequence; 4, LrWRKY3 can’t interact with mutant probes; Complex: the combination of LrWRKY3 recombinant protein and probes; Free probe: the unbound probes. b Analysis of the transactivation effect of LrWRKY3 on LrDef1 promoter. LrWRKY3 + pLrDef1 : transcriptional activity analysis of pGADT7- LrWRKY3 interaction with pLrDef1 ; Positive control: pGADT7- p53 can interact with pAbAi- p53 as a positive control; Negative control: pAbAi empty vector was used a negative control. c GUS activity was higher in transgenic tobacco lines co-expressing of LrWRKY3 and LrDef1 promoter than in the transgenic tobacco lines expressing of LrDef1 promoter. The results were shown as average values calculated from three replicates and calculated by the 2 -ΔΔCt method and analyzed by the Student’s t test. pBI121: pBI121- GUS transgenic tobacco; PD-2/3/7/10: pLrDef1 transgenic tobacco lines. Co-1/7/9/12: LrWRKY3 / pLrDef1 transgenic tobacco lines

    Journal: BMC Plant Biology

    Article Title: Lilium regale Wilson WRKY3 modulates an antimicrobial peptide gene, LrDef1 , during response to Fusarium oxysporum

    doi: 10.1186/s12870-022-03649-y

    Figure Lengend Snippet: Analysis of the interaction between LrWRKY3 and LrDef1 promoter. a EMSA revealed that the LrWRKY3 specifically bound to W box. 1, reaction solution containing only free probes; 2, LrWRKY3 can interact with biotin labelled probes containing the W box sequence; 3, LrWRKY3 can both interact with biotin labelled probes containing the W box sequence and unlabeled probes containing the W box sequence; 4, LrWRKY3 can’t interact with mutant probes; Complex: the combination of LrWRKY3 recombinant protein and probes; Free probe: the unbound probes. b Analysis of the transactivation effect of LrWRKY3 on LrDef1 promoter. LrWRKY3 + pLrDef1 : transcriptional activity analysis of pGADT7- LrWRKY3 interaction with pLrDef1 ; Positive control: pGADT7- p53 can interact with pAbAi- p53 as a positive control; Negative control: pAbAi empty vector was used a negative control. c GUS activity was higher in transgenic tobacco lines co-expressing of LrWRKY3 and LrDef1 promoter than in the transgenic tobacco lines expressing of LrDef1 promoter. The results were shown as average values calculated from three replicates and calculated by the 2 -ΔΔCt method and analyzed by the Student’s t test. pBI121: pBI121- GUS transgenic tobacco; PD-2/3/7/10: pLrDef1 transgenic tobacco lines. Co-1/7/9/12: LrWRKY3 / pLrDef1 transgenic tobacco lines

    Article Snippet: Moreover, the yeast prey empty vector pGADT7 AD was transferred into bait strain pAbAi- pLrDef1- Y1HGold competent cells as a negative control, and the pGADT7 AD- P53 vector (kit provided, Takara) was transferred into bait vector pAbAi- p53 -Y1HGOLD competent cells as a positive control.

    Techniques: Sequencing, Mutagenesis, Recombinant, Activity Assay, Positive Control, Negative Control, Plasmid Preparation, Transgenic Assay, Expressing