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Molecular Dynamics Inc yasara dynamics software package
Yasara Dynamics Software Package, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/dynamics+software/software+yasara/pm42160907-106-8-0
Average 86 stars, based on 1 article reviews
yasara dynamics software package - by Bioz Stars, 2026-10
86/100 stars

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Related Articles

other:

Article Title: Computational Identification of Potential Novel Allosteric IHF Inhibitors Using QSAR Modeling to Inhibit Plasmid-Mediated Antibiotic Resistance
Article Snippet: Molecular dynamics (MD) simulations were performed using YASARA Structure over a period of 200 nanoseconds, employing the AMBER14 force field.

Article Title: Computational Identification of Potential Novel Allosteric IHF Inhibitors Using QSAR Modeling to Inhibit Plasmid-Mediated Antibiotic Resistance.
Article Snippet: Molecular dynamics (MD) simulations were performed using YASARA Structure over a period of 200 nanoseconds, employing the AMBER14 force field.

Variant Assay:

Article Title: Improving Process Stability and Activity of B. subtilis GH46 Chitosanase via Directed Evolution: Insights into Active-Site Cleft Dynamics
Article Snippet: .. Molecular Dynamics (MD) Simulations To obtain equilibrated and stable models and to explore the conformational landscape of each variant, all-atom MD simulations were performed using the YASARA Structure package [58]. ..

Software:

Article Title: Network pharmacology and molecular docking of arctic Pseudogymnoascus australis compounds targeting ionotropic glutamate receptors for neuroprotection.
Article Snippet: Neurodegenerative diseases constitute a major public health burden, with neurotoxicity representing a critical pathogenic mechanism underlying Alzheimer's disease and Parkinson's disease.. Current therapeutic approaches are primarily symptomatic and fail to prevent disease progression, highlighting the urgent need for neuroprotective agents that can modulate pathological pathways at their source.. Natural fungal metabolites have emerged as promising sources of bioactive compounds with potential neuroprotective properties.

Article Title: DMNQ induces ferroptosis and augments the efficacy of anti-PD-L1 immunotherapy in gastric cancer via the STAT3/SLC1A4 axis to mediate cysteine metabolism reprogramming
Article Snippet: .. D Molecular dynamics simulation of the DMNQ-STAT3 complex were performed via Yasara software. ..

Binding Assay:

Article Title: Network pharmacology and molecular docking of arctic Pseudogymnoascus australis compounds targeting ionotropic glutamate receptors for neuroprotection.
Article Snippet: Neurodegenerative diseases constitute a major public health burden, with neurotoxicity representing a critical pathogenic mechanism underlying Alzheimer's disease and Parkinson's disease.. Current therapeutic approaches are primarily symptomatic and fail to prevent disease progression, highlighting the urgent need for neuroprotective agents that can modulate pathological pathways at their source.. Natural fungal metabolites have emerged as promising sources of bioactive compounds with potential neuroprotective properties.

Analogues:

Article Title: Structural tuning of diclofenac for enhanced medicinal efficacy and reduced adverse effects: an integrating computational validation
Article Snippet: .. Molecular dynamics (MD) simulations were performed for the three primary analogues (DCF2, DCF4, and DCF6) alongside the progenitor DCF, each in association with the protein structure (PDB ID: 5IKR), utilizing YASARA Dynamics with the AMBER14 force field. ..



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