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Molecular Dynamics Inc namd program
Namd Program, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/dynamics+simulation+namd+software/namd+program/pmc13192182-58-26-0
Average 86 stars, based on 1 article reviews
namd program - by Bioz Stars, 2026-11
86/100 stars

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Related Articles

Binding Assay:

Article Title: Virtual screening of compounds for the development of thyroid hormone analogues for potential application in cardiac regeneration.
Article Snippet: .. Continuing the screening, Molecular Dynamics simulations were performed with NAMD program (23) and Free Energy of Binding by Molecular Mechanics/Poisson–Boltzmann Surface Area (MM/PBSA) were calculated with AMBER program 1 3 81 Page 2 of 16 Journal of Computer-Aided Molecular Design (2026) 40:81 package (24) (details in Sect. ..

Article Title: Virtual screening of compounds for the development of thyroid hormone analogues for potential application in cardiac regeneration
Article Snippet: .. Continuing the screening, Molecular Dynamics simulations were performed with NAMD program ( ) and Free Energy of Binding by Molecular Mechanics/Poisson–Boltzmann Surface Area (MM/PBSA) were calculated with AMBER program package ( ) (details in Sect. and ), semiempirical Quantum Mechanics, PM7 , and hybrid Quantum Mechanics Molecular Mechanics (QMMM) (B3LYP 6-31G*/CHARMM36) were calculated with Orca 5 software ( ) (details in 2.9 Quantum Mechanics Molecular Mechanics Hybrid Calculation). ..

other:

Article Title: Molecular dynamics analyses of CLDN15 pore size and charge selectivity.
Article Snippet: Molecular dynamics simulations were performed using the program NAMD (Phillips et al., 2005; Phillips et al., 2020).

Article Title: Molecular dynamics analyses of CLDN15 pore size and charge selectivity
Article Snippet: Molecular dynamics simulations were performed using the program NAMD ( ; ).

Article Title: Reviving antibiotics: Efflux pump inhibitors with a new mechanism of action
Article Snippet: Molecular dynamics simulations were performed with the program NAMD version 2.91.

Mutagenesis:

Article Title: An amino acid insertion in the PHI loop of the VP2 capsid protein of serotype 1 infectious bursal disease virus deeply modifies its antigenicity and abrogates its propagation into B cells
Article Snippet: .. Molecular dynamics (MD) simulations were performed on both the wild-type model structure and the insertion mutant model under isobaric-isothermal conditions with periodic boundary conditions using the NAMD program (v.2.7) [ ]. ..

Article Title: An amino acid insertion in the PHI loop of the VP2 capsid protein of serotype 1 infectious bursal disease virus deeply modifies its antigenicity and abrogates its propagation into B cells.
Article Snippet: .. Molecular dynamics (MD) simulations were performed on both the wild-type model structure and the insertion mutant model under isobaric-isothermal conditions with periodic boundary conditions using the NAMD program (v.2.7) [23]. ..

Software:

Article Title: Virtual screening of compounds for the development of thyroid hormone analogues for potential application in cardiac regeneration
Article Snippet: .. Continuing the screening, Molecular Dynamics simulations were performed with NAMD program ( ) and Free Energy of Binding by Molecular Mechanics/Poisson–Boltzmann Surface Area (MM/PBSA) were calculated with AMBER program package ( ) (details in Sect. and ), semiempirical Quantum Mechanics, PM7 , and hybrid Quantum Mechanics Molecular Mechanics (QMMM) (B3LYP 6-31G*/CHARMM36) were calculated with Orca 5 software ( ) (details in 2.9 Quantum Mechanics Molecular Mechanics Hybrid Calculation). ..



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