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10X Genomics drop seq platform
Drop Seq Platform, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/drop-seq+platform/drop+seq/pmc12402070-482-31-29
Average 86 stars, based on 1 article reviews
drop seq platform - by Bioz Stars, 2026-10
86/100 stars

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Related Articles

Sequencing:

Article Title: Emerging Insights into the Principles and Advantages of Single-Cell and Spatial Transcriptomics
Article Snippet: .. Taking 10X Genomics' Chromium and Drop-seq as examples, both are droplet-based technologies that perform 3' end sequencing, yet they differ significantly in performance and application. .. The 10X Genomics Chromium system, leveraging a commercial platform, utilizes microfluidic chips for efficient single-cell encapsulation.

RNA Sequencing:

Article Title: IL-1 protects from fatal systemic candidiasis in mice by inhibiting oxidative phosphorylation and hypoxia.
Article Snippet: .. Library preparation and RNA sequencing was performed by the Functional Genomics Center Zurich (FGCZ) using Drop- seq platform from 10X Genomics. snRNA-seq data preprocessing Raw data was demultiplexed, filtered and mapped to the mouse reference genome (GRCm39, Ensembl release 106) using CellRanger Nature Communications | (2025) 16:2626 17 v7.0.0 with parameters expectedCells = 10,000 and includeIntrons=TRUE. ..

Article Title: The Transcription Factors Six3 and Six6 in Neuromedin-S Neurons Differentially Affect Circadian Rhythms.
Article Snippet: .. Single- cell RNA sequencing data were gathered using HypoMap (Steuernagel et al. 2022), a publicly available dataset using 17 published 10X Genomics and Drop- seq mouse hypothalamus datasets. ..

Article Title: IL-1 protects from fatal systemic candidiasis in mice by inhibiting oxidative phosphorylation and hypoxia
Article Snippet: .. Library preparation and RNA sequencing was performed by the Functional Genomics Center Zurich (FGCZ) using Drop- seq platform from 10X Genomics. .. Raw data was demultiplexed, filtered and mapped to the mouse reference genome (GRCm39, Ensembl release 106) using CellRanger v7.0.0 with parameters expectedCells = 10,000 and includeIntrons=TRUE.

Functional Assay:

Article Title: IL-1 protects from fatal systemic candidiasis in mice by inhibiting oxidative phosphorylation and hypoxia.
Article Snippet: .. Library preparation and RNA sequencing was performed by the Functional Genomics Center Zurich (FGCZ) using Drop- seq platform from 10X Genomics. snRNA-seq data preprocessing Raw data was demultiplexed, filtered and mapped to the mouse reference genome (GRCm39, Ensembl release 106) using CellRanger Nature Communications | (2025) 16:2626 17 v7.0.0 with parameters expectedCells = 10,000 and includeIntrons=TRUE. ..

Article Title: IL-1 protects from fatal systemic candidiasis in mice by inhibiting oxidative phosphorylation and hypoxia
Article Snippet: .. Library preparation and RNA sequencing was performed by the Functional Genomics Center Zurich (FGCZ) using Drop- seq platform from 10X Genomics. .. Raw data was demultiplexed, filtered and mapped to the mouse reference genome (GRCm39, Ensembl release 106) using CellRanger v7.0.0 with parameters expectedCells = 10,000 and includeIntrons=TRUE.

Single Cell:

Article Title: The Transcription Factors Six3 and Six6 in Neuromedin-S Neurons Differentially Affect Circadian Rhythms.
Article Snippet: .. Single- cell RNA sequencing data were gathered using HypoMap (Steuernagel et al. 2022), a publicly available dataset using 17 published 10X Genomics and Drop- seq mouse hypothalamus datasets. ..

Article Title: Scaling and quantization of large-scale foundation model enables resource-efficient predictions in network biology.
Article Snippet: .. We performed the above procedure to quantify (1) platform-related effects using 500 cells iPSCs assayed in parallel on the Drop-seq (single cell) or DroNc-seq (single nucleus) platform28, (2) preservation-related effects using 330 fresh versus frozen natural killer (NK) cells from the same donor (https://www.10xgenomics.com/datasets/frozenpbm-cs-donor-a-1-standard-1-1-0 and https://www.10xgenomics. com/datasets/fresh-68-k-pbm-cs-donor-a-1-standard-1-1-0), and (3) Nature Computational Science Article https://doi.org/10.1038/s43588-026-00972-4 preprocessing-related effects using 4,000 peripheral blood mononuclear cells29 aligned to genome assembly GRCh37 versus GRCh38 or processed using Cell Ranger versions 2.2.0, 3.1.0 or 7.1.030. ..

RNA sequencing:

Article Title: Comparison of spatial transcriptomics technologies using tumor cryosections.
Article Snippet: Cryosections of 10 μm thickness were obtained using a Cryostar NX50 (Epredia) cryostat at a cutting temperature of −15 °C for all technologies. .. Subsequent storage and processing were carried out in accordance with the standard protocols provided for each workflow, as detailed below. snRNA‐seq The snRNA-seq data were sourced from ref. [52] and obtained using the Chromium drop-seq platform with the 3′-Single Cell RNA-sequencing v2 kit (10x Genomics). .. Cryosections of 10 μm thickness were obtained using a Cryostar NX50 (Epredia) cryostat at a cutting temperature of −15 °C for all technologies.

Preserving:

Article Title: Scaling and quantization of large-scale foundation model enables resource-efficient predictions in network biology.
Article Snippet: .. We performed the above procedure to quantify (1) platform-related effects using 500 cells iPSCs assayed in parallel on the Drop-seq (single cell) or DroNc-seq (single nucleus) platform28, (2) preservation-related effects using 330 fresh versus frozen natural killer (NK) cells from the same donor (https://www.10xgenomics.com/datasets/frozenpbm-cs-donor-a-1-standard-1-1-0 and https://www.10xgenomics. com/datasets/fresh-68-k-pbm-cs-donor-a-1-standard-1-1-0), and (3) Nature Computational Science Article https://doi.org/10.1038/s43588-026-00972-4 preprocessing-related effects using 4,000 peripheral blood mononuclear cells29 aligned to genome assembly GRCh37 versus GRCh38 or processed using Cell Ranger versions 2.2.0, 3.1.0 or 7.1.030. ..

FACS:

Article Title: Chronic social defeat stress induces meningeal neutrophilia via type I interferon signaling in male mice
Article Snippet: .. In brief, live, nucleated, singlet cells (DAPI - DRAQ5 + ) were sorted on a BD FACS Aria Fusion into HBSS + 10% FBS prior to droplet encapsulation using 10x Genomics’ Drop-seq platform (Chromium v2). .. 4 pooled samples of 4 mice each were generated (two HC pools, two CSD pools) and run on the same 10x Chromium chip, though 1 CSD sample was lost due to errors with droplet encapsulation; libraries were sequenced on Illumina NextSeq 550 and feature counts generated using Cellranger V2 pipeline.

Encapsulation:

Article Title: Chronic social defeat stress induces meningeal neutrophilia via type I interferon signaling in male mice
Article Snippet: .. In brief, live, nucleated, singlet cells (DAPI - DRAQ5 + ) were sorted on a BD FACS Aria Fusion into HBSS + 10% FBS prior to droplet encapsulation using 10x Genomics’ Drop-seq platform (Chromium v2). .. 4 pooled samples of 4 mice each were generated (two HC pools, two CSD pools) and run on the same 10x Chromium chip, though 1 CSD sample was lost due to errors with droplet encapsulation; libraries were sequenced on Illumina NextSeq 550 and feature counts generated using Cellranger V2 pipeline.



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Image Search Results


Single‐cell transcriptomes and spatial transcriptomes in normal human placenta.

Journal: FASEB BioAdvances

Article Title: Single‐cell and spatial transcriptomics: Discovery of human placental development and disease

doi: 10.1096/fba.2024-00133

Figure Lengend Snippet: Single‐cell transcriptomes and spatial transcriptomes in normal human placenta.

Article Snippet: Villi and decidua , 6–11 weeks of gestation , 8 (villi), 6 (decidua) , 10x Genomics; Drop‐seq platforms , 14,341 (villi), 6754 (decidua) , NA , 26 (Read1) and 98 (Read2); 20 (Read1) and 60 (Read2) , Illumina HiSeq 2500; Illumina NextSeq 500 , NA , NA , NA , Hemant Suryawanshi et al. (2018) .

Techniques: Sampling, Single-cell Isolation, Modification