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molecular docking and dynamics simulation analyses  (Biomol GmbH)

 
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    Biomol GmbH molecular docking and dynamics simulation analyses
    Molecular Docking And Dynamics Simulation Analyses, supplied by Biomol GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/docking+simulation+analyses/molecular+docking/pm29859460-364-1-27
    Average 90 stars, based on 1 article reviews
    molecular docking and dynamics simulation analyses - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    Biomarker Discovery:

    Article Title: Molecular interactions of <i>Andrographis paniculata</i> Burm. f. Active Compound with Nuclear Receptor (CAR and PXR): An In Silico Assessment Approach
    Article Snippet: .. [28] Shivanika, C., Deepak Kumar, S., Ragunathan, V., Tiwari, P., Sumitha, A., and Devi, P.B, 2020, Molecular docking, validation, dynamics simulations, and pharmacokinetic prediction of natural compounds against the SARS-CoV-2 mainprotease, J. Biomol. ..

    Article Title: Synthesis and characterization of N-substituted thiosemicarbazones: DNA/BSA binding, molecular docking, anticancer activity, ADME study and computational investigations
    Article Snippet: A series of thiosemicarbazones with the general formula, R −CH = N −NH −C(S) −R 1 [R = C 6 H 5 F & R 1 = C 4 H 9 NO (TL1), R = C 8 H 10 O 2 & R 1 = C 4 H 9 NO (TL2), R = C 6 H 5 F & R 1 = C 4 H 9 N (TL3), R = C 6 H 5 Br & R 1 = C 4 H 9 N (TL4)] were synthesized.. The UV–Visible, Infra-red, NMR and HRMS spectra were used to confirm compounds.. The single-crystal X-ray diffraction (XRD) technique was used to determine the molecular composition of TL3 and TL4.

    Isolation:

    Article Title: Green synthesis of gold nanoparticles using quercetin biomolecule from mangrove plant, Ceriops tagal: Assessment of antiproliferative properties, cellular uptake and DFT studies
    Article Snippet: Synthesis, structural elucidation and in vitro cytotoxic properties of quercetin gold nanoparticles (QuAuNPs) were derived from the mangrove plant, Ceriops tagal .. UV–Visible spectroscopy (UV–Vis), Fourier transform infrared spectroscopy (FTIR), X-ray diffraction (XRD), field emission scanning electron microscopy (FESEM) were used to characterize the quercetin Au-NPs while UV–Vis spectral analysis noted a strong surface plasmon resonance (SPR) band at 430 nm.. From the FT-IR results, the peaks obtained indicate their relation to phenols, flavonoids, and anthocyanins with the inference of their role as reducing agents.

    In Vitro:

    Article Title: Green synthesis of gold nanoparticles using quercetin biomolecule from mangrove plant, Ceriops tagal: Assessment of antiproliferative properties, cellular uptake and DFT studies
    Article Snippet: Synthesis, structural elucidation and in vitro cytotoxic properties of quercetin gold nanoparticles (QuAuNPs) were derived from the mangrove plant, Ceriops tagal .. UV–Visible spectroscopy (UV–Vis), Fourier transform infrared spectroscopy (FTIR), X-ray diffraction (XRD), field emission scanning electron microscopy (FESEM) were used to characterize the quercetin Au-NPs while UV–Vis spectral analysis noted a strong surface plasmon resonance (SPR) band at 430 nm.. From the FT-IR results, the peaks obtained indicate their relation to phenols, flavonoids, and anthocyanins with the inference of their role as reducing agents.

    other:

    Article Title: Novel cyclohepta[b]thiophene derivative incorporating pyrimidine, pyridine, and chromene moiety as potential antimicrobial agents targeting DNA gyrase
    Article Snippet: The emergence of drug-resistant microbes is responsible for high morbidity and mortality worldwide.. In our endeavors to cultivate novel and effectual antimicrobial agents, we present the triumphant synthesis of a novel class of cyclohepta-thieno-pyrimidins 4-8 , cyclohepta[ b ]thiophene appended 2-imino-2 H chromene-3-carboxamide and 3-imino-3 H -benzo[ f ]chromene-2-carboxamide derivatives 9-11 molecules, to enrich their biological behavior.. The desired molecules had undergone in-vitro appraisal for their antimicrobial activity, demonstrating encouraging results.

    Article Title: ADMET prediction, Docking, DM analysis and antibacterial screening of epoxy furan-clerodanes from Croton hypoleucus
    Article Snippet: Three new epoxy-clerodanes bearing a furan ring named hypoleins D – F ( 1 − 3 ) as well as compounds know hypoleins A − C , and crotonpenes A and B were isolated from roots of Croton hypoleucus .. The structures of hypoleins D – F were elucidated by the analysis of IR, HRMS and 1D, 2D data.. All clerodanes ( 1 − 8 ) possess an epoxy ring C-3/C-4 and one furan ring at C-12.

    Article Title: In silico and in vitro antioxidant potential of Thymus serpyllum L. essential oil
    Article Snippet: Baumler, K. Dev, Molecular docking studies of phytocompounds of Rheum emodi Wall with proteins responsible for antibiotic resistance in bacterial and fungal pathogens: in silico approach to enhance the bio-availability of antibiotics, J. Biomol.

    Article Title: Click reaction inspired synthesis, antimicrobial evaluation and in silico docking of some pyrrole-chalcone linked 1,2,3-triazole hybrids
    Article Snippet: The discovery of small organic molecules as new antimicrobial agents is a promising strategy for encountering the problem of multidrug-resistant microbial strains.. In an attempt to identify new azole-based antimicrobials, a library of new pyrrole based chalcone linked 1,2,3-triazoles was synthesized via CuAAC reaction of pyrrole-chalcone based terminal alkynes with in situ generated organic azides.. Newly synthesized hybrids were structurally characterized using IR, 1 H, & 13 C NMR and MS data.

    Article Title: In silico design of novel PIN1 inhibitors by combined of 3D-QSAR, molecular docking, molecular dynamic simulation and ADMET studies
    Article Snippet: Due to the role of enzyme PIN1 in cancer cells, PIN1 is a promising therapeutic target.. The study of the mechanism between PIN1 and thiazole inhibitors was carried out operating 3D-QSAR modeling, molecular docking, molecular dynamics simulations, in order to design high activity inhibitors.. The optimal CoMSIA / SH model showed good reliability and satisfactory predictability Q 2 = 0.717, R 2 = 0.961, R 2 pred = 0.740.



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