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t2a egfp coding sequences downstream  (Addgene inc)


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    Addgene inc t2a egfp coding sequences downstream
    T2a Egfp Coding Sequences Downstream, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 33 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/dnmt3a+sequence/pdCas9-DNMT3A-EGFP+(Plasmid+%2371666)/pmc08378768-139-19-29
    Average 93 stars, based on 33 article reviews
    t2a egfp coding sequences downstream - by Bioz Stars, 2026-10
    93/100 stars

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    Related Articles

    DNA Methylation Assay:

    Article Title: Pancreatic islet β-cell subtypes are derived from biochemically-distinct and nutritionally-regulated islet progenitors
    Article Snippet: .. For targeted DNA methylation, a plasmid that drives dCas9-DNMT3a-T2A-eGFP expression with CMV promoter/enhancer was purchased from Addgene (#71666). ..

    Article Title: Pancreatic islet β-cell subtypes are derived from biochemically-distinct and nutritionally-regulated islet progenitors.
    Article Snippet: .. Nature Communications | (2025) 16:5758 14 MIN6 cell line usage and targeted DNA methylation and gene expression For targeted DNA methylation, a plasmid that drives dCas9-DNMT3aT2A-eGFP expression with CMV promoter/enhancer was purchased from Addgene (#71666). ..

    Plasmid Preparation:

    Article Title: Pancreatic islet β-cell subtypes are derived from biochemically-distinct and nutritionally-regulated islet progenitors
    Article Snippet: .. For targeted DNA methylation, a plasmid that drives dCas9-DNMT3a-T2A-eGFP expression with CMV promoter/enhancer was purchased from Addgene (#71666). ..

    Article Title: Pancreatic islet β-cell subtypes are derived from biochemically-distinct and nutritionally-regulated islet progenitors.
    Article Snippet: .. Nature Communications | (2025) 16:5758 14 MIN6 cell line usage and targeted DNA methylation and gene expression For targeted DNA methylation, a plasmid that drives dCas9-DNMT3aT2A-eGFP expression with CMV promoter/enhancer was purchased from Addgene (#71666). ..

    Article Title: Comprehensive profiling of CRISPR/dCas9 epigenome editors indicates a complex link between on and off target effects.
    Article Snippet: The same procedure was applied to the control tool, consisting of dCas9 fused with the inactive DNMT3A (M3-dCAS9DNMT3A, Addgene #220237). .. M3-dCAS9-DNMT3A-DNMT3A (dCas9-3A3A, Addgene #218776) plasmid made by the amplification of the human DNMT3A catalytic domain from the pdCas9DNMT3A-EGFP (Addgene #71666) plasmid using the primers containing the FseI restriction sites. .. For M3-dCAS9-DNMT3A-DNMT3L (dCas9-3A3L, Addgene #218777), the murine DNMT3L catalytic domain and 27bp linker included FseI restriction site were amplified from pET28-Dnmt3a3L-sc27 AR TIC LE IN PR ES S plasmid (Addgene #71827).

    Article Title: PRAME-AS lncRNA, regulated by MZF1, modulates PRAME expression and cell stemness
    Article Snippet: .. 3 25 KDa branched polyethyleneimine Experimental groups The amounts of plasmids1 The amounts of transfection reagent The amount of puromycin for Selection Duration of selection2 kn o ck o u t PRAME-AS knockout cells 5 g/l pHD_5009-1 5 g/l pHD_4012 2 μl of 1 mg/ml bPEI253 0.7 μg/ml puromycin sulfate 3 days treatments 3 days recovery O ve re xp re ss io n MZF1 overexpressing cells 5 g/l pHD_4091 5 g/l pHD_3501 2 μl of 1 mg/ml bPEI25 0.6 μg/ml puromycin sulfate 3 days treatments 3 days recovery Control cell line (plasmid without FLAG- MZF1) 5 g/l pHD_4090 5 g/l of pHD_3501 2 μl of 1 mg/ml bPEI25 m e th yl at io n dCas9DNMT3A- treated cells 5 g /l pHD 71666_1 5 g /l pHD 71666_2 2 μl of 1 mg/ml bPEI25 No selection - Control group (plasmids without sgRNAs) 10 g/l Addgene #71666 2 μl of 1 mg/ml bPEI25 P R A M E lo cu s re gu la to ry r e gi o n as sa y PRAME direction 10 g of pHD4016-1 2 μl of 1 mg/ml bPEI25 PRAME-AS LncRNA direction 10 g of pHD4016-2 2 μl of 1 mg/ml bPEI25 No selection - Control group (promoterless plasmid) 10 g of pHD4016-3 2 μl of 1 mg/ml bPEI25 ..

    Expressing:

    Article Title: Pancreatic islet β-cell subtypes are derived from biochemically-distinct and nutritionally-regulated islet progenitors
    Article Snippet: .. For targeted DNA methylation, a plasmid that drives dCas9-DNMT3a-T2A-eGFP expression with CMV promoter/enhancer was purchased from Addgene (#71666). ..

    Article Title: Pancreatic islet β-cell subtypes are derived from biochemically-distinct and nutritionally-regulated islet progenitors.
    Article Snippet: .. Nature Communications | (2025) 16:5758 14 MIN6 cell line usage and targeted DNA methylation and gene expression For targeted DNA methylation, a plasmid that drives dCas9-DNMT3aT2A-eGFP expression with CMV promoter/enhancer was purchased from Addgene (#71666). ..

    Gene Expression:

    Article Title: Pancreatic islet β-cell subtypes are derived from biochemically-distinct and nutritionally-regulated islet progenitors.
    Article Snippet: .. Nature Communications | (2025) 16:5758 14 MIN6 cell line usage and targeted DNA methylation and gene expression For targeted DNA methylation, a plasmid that drives dCas9-DNMT3aT2A-eGFP expression with CMV promoter/enhancer was purchased from Addgene (#71666). ..

    Produced:

    Article Title: PRAME-AS lncRNA, regulated by MZF1, modulates PRAME expression and cell stemness
    Article Snippet: According to Vojta et al. [ ], a 25–35 bp region downstream of the protospacer adjacent motif (PAM) can be an optimum range for an effective methylation induced by dCas9-DNMT3A and, the CpG dinucleotides outside the optimum range of 25–35 bp from the PAM sequence are less likely to become methylated. sgRNA coding sequences were synthesized by annealing oligonucleotides (Macrogen Inc., Seoul, South Korea) in a reaction containing one μl of each oligonucleotide (100μM), and 1X T4 DNA Ligase buffer (Thermo Fisher Scientific, Waltham, MA, USA), and incubating in a thermocycler at 95°C for 3 minutes followed by downward gradient toward 25 °C (1 minute at each thermal point and 5 minutes at 25 °C). .. The annealing of two oligonucleotides produced a double-stranded DNA fragment with two BbsI sticky ends matching those of the BbsI-digested pHD_5009 [ ] and Addgene #71666 [ ] plasmids. ..

    Amplification:

    Article Title: Comprehensive profiling of CRISPR/dCas9 epigenome editors indicates a complex link between on and off target effects.
    Article Snippet: The same procedure was applied to the control tool, consisting of dCas9 fused with the inactive DNMT3A (M3-dCAS9DNMT3A, Addgene #220237). .. M3-dCAS9-DNMT3A-DNMT3A (dCas9-3A3A, Addgene #218776) plasmid made by the amplification of the human DNMT3A catalytic domain from the pdCas9DNMT3A-EGFP (Addgene #71666) plasmid using the primers containing the FseI restriction sites. .. For M3-dCAS9-DNMT3A-DNMT3L (dCas9-3A3L, Addgene #218777), the murine DNMT3L catalytic domain and 27bp linker included FseI restriction site were amplified from pET28-Dnmt3a3L-sc27 AR TIC LE IN PR ES S plasmid (Addgene #71827).

    Negative Control:

    Article Title: PRAME-AS lncRNA, regulated by MZF1, modulates PRAME expression and cell stemness
    Article Snippet: .. Addgene #71666 , U6-CMV-3Flag-NLS-dCas9-NLS-DNMT3a-T2A-EGFP-PA , Encoding dCas9-DNMT3a & EGFP; used as negative control for hypermethylation , [ ] . ..

    Transfection:

    Article Title: PRAME-AS lncRNA, regulated by MZF1, modulates PRAME expression and cell stemness
    Article Snippet: .. 3 25 KDa branched polyethyleneimine Experimental groups The amounts of plasmids1 The amounts of transfection reagent The amount of puromycin for Selection Duration of selection2 kn o ck o u t PRAME-AS knockout cells 5 g/l pHD_5009-1 5 g/l pHD_4012 2 μl of 1 mg/ml bPEI253 0.7 μg/ml puromycin sulfate 3 days treatments 3 days recovery O ve re xp re ss io n MZF1 overexpressing cells 5 g/l pHD_4091 5 g/l pHD_3501 2 μl of 1 mg/ml bPEI25 0.6 μg/ml puromycin sulfate 3 days treatments 3 days recovery Control cell line (plasmid without FLAG- MZF1) 5 g/l pHD_4090 5 g/l of pHD_3501 2 μl of 1 mg/ml bPEI25 m e th yl at io n dCas9DNMT3A- treated cells 5 g /l pHD 71666_1 5 g /l pHD 71666_2 2 μl of 1 mg/ml bPEI25 No selection - Control group (plasmids without sgRNAs) 10 g/l Addgene #71666 2 μl of 1 mg/ml bPEI25 P R A M E lo cu s re gu la to ry r e gi o n as sa y PRAME direction 10 g of pHD4016-1 2 μl of 1 mg/ml bPEI25 PRAME-AS LncRNA direction 10 g of pHD4016-2 2 μl of 1 mg/ml bPEI25 No selection - Control group (promoterless plasmid) 10 g of pHD4016-3 2 μl of 1 mg/ml bPEI25 ..

    Selection:

    Article Title: PRAME-AS lncRNA, regulated by MZF1, modulates PRAME expression and cell stemness
    Article Snippet: .. 3 25 KDa branched polyethyleneimine Experimental groups The amounts of plasmids1 The amounts of transfection reagent The amount of puromycin for Selection Duration of selection2 kn o ck o u t PRAME-AS knockout cells 5 g/l pHD_5009-1 5 g/l pHD_4012 2 μl of 1 mg/ml bPEI253 0.7 μg/ml puromycin sulfate 3 days treatments 3 days recovery O ve re xp re ss io n MZF1 overexpressing cells 5 g/l pHD_4091 5 g/l pHD_3501 2 μl of 1 mg/ml bPEI25 0.6 μg/ml puromycin sulfate 3 days treatments 3 days recovery Control cell line (plasmid without FLAG- MZF1) 5 g/l pHD_4090 5 g/l of pHD_3501 2 μl of 1 mg/ml bPEI25 m e th yl at io n dCas9DNMT3A- treated cells 5 g /l pHD 71666_1 5 g /l pHD 71666_2 2 μl of 1 mg/ml bPEI25 No selection - Control group (plasmids without sgRNAs) 10 g/l Addgene #71666 2 μl of 1 mg/ml bPEI25 P R A M E lo cu s re gu la to ry r e gi o n as sa y PRAME direction 10 g of pHD4016-1 2 μl of 1 mg/ml bPEI25 PRAME-AS LncRNA direction 10 g of pHD4016-2 2 μl of 1 mg/ml bPEI25 No selection - Control group (promoterless plasmid) 10 g of pHD4016-3 2 μl of 1 mg/ml bPEI25 ..

    Knock-Out:

    Article Title: PRAME-AS lncRNA, regulated by MZF1, modulates PRAME expression and cell stemness
    Article Snippet: .. 3 25 KDa branched polyethyleneimine Experimental groups The amounts of plasmids1 The amounts of transfection reagent The amount of puromycin for Selection Duration of selection2 kn o ck o u t PRAME-AS knockout cells 5 g/l pHD_5009-1 5 g/l pHD_4012 2 μl of 1 mg/ml bPEI253 0.7 μg/ml puromycin sulfate 3 days treatments 3 days recovery O ve re xp re ss io n MZF1 overexpressing cells 5 g/l pHD_4091 5 g/l pHD_3501 2 μl of 1 mg/ml bPEI25 0.6 μg/ml puromycin sulfate 3 days treatments 3 days recovery Control cell line (plasmid without FLAG- MZF1) 5 g/l pHD_4090 5 g/l of pHD_3501 2 μl of 1 mg/ml bPEI25 m e th yl at io n dCas9DNMT3A- treated cells 5 g /l pHD 71666_1 5 g /l pHD 71666_2 2 μl of 1 mg/ml bPEI25 No selection - Control group (plasmids without sgRNAs) 10 g/l Addgene #71666 2 μl of 1 mg/ml bPEI25 P R A M E lo cu s re gu la to ry r e gi o n as sa y PRAME direction 10 g of pHD4016-1 2 μl of 1 mg/ml bPEI25 PRAME-AS LncRNA direction 10 g of pHD4016-2 2 μl of 1 mg/ml bPEI25 No selection - Control group (promoterless plasmid) 10 g of pHD4016-3 2 μl of 1 mg/ml bPEI25 ..

    Control:

    Article Title: PRAME-AS lncRNA, regulated by MZF1, modulates PRAME expression and cell stemness
    Article Snippet: .. 3 25 KDa branched polyethyleneimine Experimental groups The amounts of plasmids1 The amounts of transfection reagent The amount of puromycin for Selection Duration of selection2 kn o ck o u t PRAME-AS knockout cells 5 g/l pHD_5009-1 5 g/l pHD_4012 2 μl of 1 mg/ml bPEI253 0.7 μg/ml puromycin sulfate 3 days treatments 3 days recovery O ve re xp re ss io n MZF1 overexpressing cells 5 g/l pHD_4091 5 g/l pHD_3501 2 μl of 1 mg/ml bPEI25 0.6 μg/ml puromycin sulfate 3 days treatments 3 days recovery Control cell line (plasmid without FLAG- MZF1) 5 g/l pHD_4090 5 g/l of pHD_3501 2 μl of 1 mg/ml bPEI25 m e th yl at io n dCas9DNMT3A- treated cells 5 g /l pHD 71666_1 5 g /l pHD 71666_2 2 μl of 1 mg/ml bPEI25 No selection - Control group (plasmids without sgRNAs) 10 g/l Addgene #71666 2 μl of 1 mg/ml bPEI25 P R A M E lo cu s re gu la to ry r e gi o n as sa y PRAME direction 10 g of pHD4016-1 2 μl of 1 mg/ml bPEI25 PRAME-AS LncRNA direction 10 g of pHD4016-2 2 μl of 1 mg/ml bPEI25 No selection - Control group (promoterless plasmid) 10 g of pHD4016-3 2 μl of 1 mg/ml bPEI25 ..



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    Image Search Results


    Schematic overview of the CRISPR/dCas9- dnmt3a editing system for the emx2 promoter region of Chinese tongue sole testis cells. ( A ) Edit system schematic diagram. ( B ) dCas9- dnmt3a plasmid structure diagram and sgRNA plasmid structure diagram. ( C ) The sequence of the sgRNAs. ( D ) Bisulfite sequencing positions and sgRNA sites of emx2 ; lollipop chart on the left represents bisulfite sequencing of the CpGs’ position. The arrows indicate the target sequence of the designed sgRNAs, with the direction of the arrows aligning with the target sequence.

    Journal: International Journal of Molecular Sciences

    Article Title: CRISPR/dCas9-Mediated DNA Methylation Editing on emx2 in Chinese Tongue Sole ( Cynoglossus semilaevis ) Testis Cells

    doi: 10.3390/ijms25147637

    Figure Lengend Snippet: Schematic overview of the CRISPR/dCas9- dnmt3a editing system for the emx2 promoter region of Chinese tongue sole testis cells. ( A ) Edit system schematic diagram. ( B ) dCas9- dnmt3a plasmid structure diagram and sgRNA plasmid structure diagram. ( C ) The sequence of the sgRNAs. ( D ) Bisulfite sequencing positions and sgRNA sites of emx2 ; lollipop chart on the left represents bisulfite sequencing of the CpGs’ position. The arrows indicate the target sequence of the designed sgRNAs, with the direction of the arrows aligning with the target sequence.

    Article Snippet: The dnmt3a sequence and the fuw-dCas9 plasmid (Addgene #84476, Watertown, MA, USA) were digested with HamI (NEB) and EcoRI (NEB) enzymes at 37 °C for 2 h, respectively.

    Techniques: CRISPR, Plasmid Preparation, Sequencing, Methylation Sequencing

    CRISPR/dCas9-mediated DNA methylation editing on emx2 gene. DNA methylation status of the emx2 promoter region with the ( A ) blank control; ( B ) dCas9- dnmt3a ; ( C ) dCas9- dnmt3a and sgRNA1; ( D ) dCas9- dnmt3a and sgRNA2; ( E ) dCas9- dnmt3a and sgRNA3; ( F ) dCas9- dnmt3a and sgRNA4; ( G ) dCas9- dnmt3a and sgRNA5; ( H ) dCas9- dnmt3a and sgRNA6; ( I ) dCas9- dnmt3a and sgRNA1+3; ( J ) Percentage of DNA methylation levels at emx2 promoter region with different treatments; ( K ) Relative expression of emx2 after transfection of dCas9- dnmt3a and different sgRNAs. Filled (black) circles correspond to methylated CpGs, unfilled (white) circles correspond to unmethylated CpGs. Upper black lines indicate statistical difference among blank control and sgRNA groups, while lines below the graph highlight that the sgRNAs were co-transfected with the CRISPR/dCas9- dnmt3a vector. The asterisks (*) are used to denote significant differences among groups using two-way ANOVA and Tukey’s multiple comparisons. *** p < 0.001, **** p < 0.0001.

    Journal: International Journal of Molecular Sciences

    Article Title: CRISPR/dCas9-Mediated DNA Methylation Editing on emx2 in Chinese Tongue Sole ( Cynoglossus semilaevis ) Testis Cells

    doi: 10.3390/ijms25147637

    Figure Lengend Snippet: CRISPR/dCas9-mediated DNA methylation editing on emx2 gene. DNA methylation status of the emx2 promoter region with the ( A ) blank control; ( B ) dCas9- dnmt3a ; ( C ) dCas9- dnmt3a and sgRNA1; ( D ) dCas9- dnmt3a and sgRNA2; ( E ) dCas9- dnmt3a and sgRNA3; ( F ) dCas9- dnmt3a and sgRNA4; ( G ) dCas9- dnmt3a and sgRNA5; ( H ) dCas9- dnmt3a and sgRNA6; ( I ) dCas9- dnmt3a and sgRNA1+3; ( J ) Percentage of DNA methylation levels at emx2 promoter region with different treatments; ( K ) Relative expression of emx2 after transfection of dCas9- dnmt3a and different sgRNAs. Filled (black) circles correspond to methylated CpGs, unfilled (white) circles correspond to unmethylated CpGs. Upper black lines indicate statistical difference among blank control and sgRNA groups, while lines below the graph highlight that the sgRNAs were co-transfected with the CRISPR/dCas9- dnmt3a vector. The asterisks (*) are used to denote significant differences among groups using two-way ANOVA and Tukey’s multiple comparisons. *** p < 0.001, **** p < 0.0001.

    Article Snippet: The dnmt3a sequence and the fuw-dCas9 plasmid (Addgene #84476, Watertown, MA, USA) were digested with HamI (NEB) and EcoRI (NEB) enzymes at 37 °C for 2 h, respectively.

    Techniques: CRISPR, DNA Methylation Assay, Control, Expressing, Transfection, Methylation, Plasmid Preparation

    Off-target effects of CRISPR/dCas9- dnmt3a system. DNA methylation of the promoter region of ( A ) slc20a2 ; ( B ) ddx17 ; ( C ) katb6 and ( D ) xpa and relative expression of potential off-target genes ( E ) slc20a2 ; ( F ) ddx17 ; ( G ) katb6 and ( H ) xpa . Upper black lines indicate statistical difference between the blank control and sgRNA3 groups, while lines below the graph highlight that the sgRNAs were co-transfected with the CRISPR/dCas9- dnmt3a vector. The asterisks (*) are used to denote significant differences between groups using two-way ANOVA and Tukey’s multiple comparisons. *** p < 0.001.

    Journal: International Journal of Molecular Sciences

    Article Title: CRISPR/dCas9-Mediated DNA Methylation Editing on emx2 in Chinese Tongue Sole ( Cynoglossus semilaevis ) Testis Cells

    doi: 10.3390/ijms25147637

    Figure Lengend Snippet: Off-target effects of CRISPR/dCas9- dnmt3a system. DNA methylation of the promoter region of ( A ) slc20a2 ; ( B ) ddx17 ; ( C ) katb6 and ( D ) xpa and relative expression of potential off-target genes ( E ) slc20a2 ; ( F ) ddx17 ; ( G ) katb6 and ( H ) xpa . Upper black lines indicate statistical difference between the blank control and sgRNA3 groups, while lines below the graph highlight that the sgRNAs were co-transfected with the CRISPR/dCas9- dnmt3a vector. The asterisks (*) are used to denote significant differences between groups using two-way ANOVA and Tukey’s multiple comparisons. *** p < 0.001.

    Article Snippet: The dnmt3a sequence and the fuw-dCas9 plasmid (Addgene #84476, Watertown, MA, USA) were digested with HamI (NEB) and EcoRI (NEB) enzymes at 37 °C for 2 h, respectively.

    Techniques: CRISPR, DNA Methylation Assay, Expressing, Control, Transfection, Plasmid Preparation

    Effects on downstream genes after the emx2 promoter region methylated. Relative expression of downstream genes ( A ) myc , ( B ) klf4 , and ( C ) wnt1 . Upper black lines indicate statistical difference among blank control and sgRNA groups for myc expression, while lines below the graph highlight that the sgRNAs were co-transfected with the CRISPR/dCas9- dnmt3a vector. The asterisks (*) are used to denote significant differences between groups using two-way ANOVA and Tukey’s multiple comparisons. *** p < 0.001.

    Journal: International Journal of Molecular Sciences

    Article Title: CRISPR/dCas9-Mediated DNA Methylation Editing on emx2 in Chinese Tongue Sole ( Cynoglossus semilaevis ) Testis Cells

    doi: 10.3390/ijms25147637

    Figure Lengend Snippet: Effects on downstream genes after the emx2 promoter region methylated. Relative expression of downstream genes ( A ) myc , ( B ) klf4 , and ( C ) wnt1 . Upper black lines indicate statistical difference among blank control and sgRNA groups for myc expression, while lines below the graph highlight that the sgRNAs were co-transfected with the CRISPR/dCas9- dnmt3a vector. The asterisks (*) are used to denote significant differences between groups using two-way ANOVA and Tukey’s multiple comparisons. *** p < 0.001.

    Article Snippet: The dnmt3a sequence and the fuw-dCas9 plasmid (Addgene #84476, Watertown, MA, USA) were digested with HamI (NEB) and EcoRI (NEB) enzymes at 37 °C for 2 h, respectively.

    Techniques: Methylation, Expressing, Control, Transfection, CRISPR, Plasmid Preparation