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4dtv distance  (WholeGenome LLC)

 
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    WholeGenome LLC 4dtv distance
    4dtv Distance, supplied by WholeGenome LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/density+plot/4dtv+density+plot/pm29691383-246-9-30
    Average 90 stars, based on 1 article reviews
    4dtv distance - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    other:

    Article Title: Compare_Genomes: A Comparative Genomics Workflow to Streamline the Analysis of Evolutionary Divergence Across Eukaryotic Genomes.
    Article Snippet: Wholegenome duplication events were identified using the 4DTv density plot (Fig. 1C).

    Article Title: The Gastrodia elata genome provides insights into plant adaptation to heterotrophy.
    Article Snippet: For each gene pair in a syntenic block, the 4DTv (transversion substitutions at fourfold degenerate sites) distance was calculated, and values of all gene pairs were plotted to identify putative wholegenome duplication events in G. elata.



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    Image Search Results


    Inducible IFT88 KO mice have reduced EEG power over a broad spectrum. ( a. ) Power spectrum density plots (PSDs) of EEG waveform power broken down by frequency ranges reveals a shift in brainwave activity. Delta = 1 – 4 Hz, Theta = 4 – 8 Hz, Alpha = 8 – 13 Hz, Beta = 13 – 30 Hz, Gamma = 30 – 50 Hz. ( b. ) Cumulative distribution plots of the above PSDs show a shift in EEG waveform to a lower power. Overall EEG waveform activity was reduced in inducible IFT88 KOs in both the wake (p = 0.017) and non-REM (p = 0.034) states (Kolmogorov–Smirnov test).

    Journal: Scientific Reports

    Article Title: Temporal ablation of the ciliary protein IFT88 alters normal brainwave patterns

    doi: 10.1038/s41598-024-83432-1

    Figure Lengend Snippet: Inducible IFT88 KO mice have reduced EEG power over a broad spectrum. ( a. ) Power spectrum density plots (PSDs) of EEG waveform power broken down by frequency ranges reveals a shift in brainwave activity. Delta = 1 – 4 Hz, Theta = 4 – 8 Hz, Alpha = 8 – 13 Hz, Beta = 13 – 30 Hz, Gamma = 30 – 50 Hz. ( b. ) Cumulative distribution plots of the above PSDs show a shift in EEG waveform to a lower power. Overall EEG waveform activity was reduced in inducible IFT88 KOs in both the wake (p = 0.017) and non-REM (p = 0.034) states (Kolmogorov–Smirnov test).

    Article Snippet: To characterize if IFT88 KO mice share this pathology the 24-h EEG/EMG recordings were filtered to remove the DC offset as well as line current and then further processed in MATLAB to generate power spectrum density plots (PSDs; Fig. ).

    Techniques: Activity Assay

    Ciliary ablation shifts EEG activity in a frequency dependent manner. ( a. ) Decomposition of PSDs reveals that during the awake state, low-frequency delta wave activity was reduced by 75.1% (p = 0.0059) and theta wave power was attenuated by 52.8% in inducible IFT88 KOs (p = 0.0013). This response was sleep-state dependent as slow-wave power was not attenuated in Non-REM and REM sleep. During sleep states only power of high frequency waveforms was impacted. During non-REM sleep alpha and beta wave power was reduced by 44.2% (p = 0.0167) and 45.9% (p = 0.0265). This remained consistent in REM sleep where alpha wave power was attenuated 43.9% (p = 0.0179) and beta wave power by 40.65% (p = 0.0492) (Tukey’s HSD test). ( b. ) Density distribution plots of this data further illustrate how IFT88 ablation shifts peak brain power in these frequencies (Kolmogorov–Smirnov test).

    Journal: Scientific Reports

    Article Title: Temporal ablation of the ciliary protein IFT88 alters normal brainwave patterns

    doi: 10.1038/s41598-024-83432-1

    Figure Lengend Snippet: Ciliary ablation shifts EEG activity in a frequency dependent manner. ( a. ) Decomposition of PSDs reveals that during the awake state, low-frequency delta wave activity was reduced by 75.1% (p = 0.0059) and theta wave power was attenuated by 52.8% in inducible IFT88 KOs (p = 0.0013). This response was sleep-state dependent as slow-wave power was not attenuated in Non-REM and REM sleep. During sleep states only power of high frequency waveforms was impacted. During non-REM sleep alpha and beta wave power was reduced by 44.2% (p = 0.0167) and 45.9% (p = 0.0265). This remained consistent in REM sleep where alpha wave power was attenuated 43.9% (p = 0.0179) and beta wave power by 40.65% (p = 0.0492) (Tukey’s HSD test). ( b. ) Density distribution plots of this data further illustrate how IFT88 ablation shifts peak brain power in these frequencies (Kolmogorov–Smirnov test).

    Article Snippet: To characterize if IFT88 KO mice share this pathology the 24-h EEG/EMG recordings were filtered to remove the DC offset as well as line current and then further processed in MATLAB to generate power spectrum density plots (PSDs; Fig. ).

    Techniques: Activity Assay