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heat map with dendrogram  (OriginLab corp)


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    OriginLab corp heat map with dendrogram
    Heat Map With Dendrogram, supplied by OriginLab corp, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/dendrogram/heat+map+with+dendrogram/pmc12191652-183-107-112
    Average 90 stars, based on 1 article reviews
    heat map with dendrogram - by Bioz Stars, 2026-09
    90/100 stars

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    other:

    Article Title: Dynamic changes of phytochemical profiles identified key points of flaxseed capsule maturation for lignan accumulation
    Article Snippet: Flaxseed is a rich source of lignans and hydroxycinnamic acids.. In this study, the variation of lignans, hydroxycinnamic acids, and the transcription levels of genes involving lignan biosynthetic pathway of flaxseed capsules at different mature stages was investigated.. Secoisolarisiresinol diglucoside showed a sharp increase during the early rapid growing period, with about a 24.7-fold enhancement till S3, followed a slower increasing rate and peaked at mature stage S6.

    Article Title: Molecular Regulation of Antioxidant Defense and Metabolic Reprogramming in Xiaozhan Rice Genotypes: Differential Roles of Salicylic Acid and Melatonin Under Salt Stress
    Article Snippet: The weight coefficient W j for each indicator was calculated as follows Equation (7): (7) W j = V j ∑ j = 1 n V j The comprehensive evaluation value ( D ) was determined using Equations (8) and (9): (8) D = ∑ j = 1 n μ X j × W j (9) Δ D = D C K - D N a C l Higher Δ D values indicated weaker salt tolerance of the evaluated varieties, and the two genotypes with the highest and weakest salt tolerance were selected for correlation analysis and cluster visualization using the ‘correlation plot’ and ‘heat map with dendrogram’ applications in Origin 2024 (OriginLab Corporation, Northampton, MA, USA).

    Article Title: Coupling electronic nose with GC–MS improves flavor recognition and grade differentiation of Zhenjiang aromatic vinegar
    Article Snippet: Funding information National Key R&D Program of China, Grant/ Award Number: 2017YFD0400102; Postgraduate Research & Practice Innovation Program of Jiangsu Province, Grant/Award Number: KYCX21_3398 Abstract In this study, the flavor volatile profiles of five grades of Zhenjiang aromatic vinegar (ZAV) were compared using a gas chromatography-mass spectrometer (GC–MS) and electronic nose (E-nose).. A total of 55 volatile compounds were identified, with 14 volatile compounds, including furfural, acetic acid, tetramethylpyrazine, phenethyl acetate, and phenylethyl alcohol, being identified as the key volatile compounds causing significant differences between different grades of ZAV samples.. Principal component analysis (PCA) analysis of E-nose data revealed that the W5S, W1W, W2W, W1S, and W2S sensors with high signal intensity to all ZAV samples correctly categorized the five grades of ZAV samples.

    Article Title: Characterizing sludge-derived microplastics from various wastewater treatment plants in Taiwan: Insights from spatiotemporal patterns and ecological risks
    Article Snippet: The consistency and effectively trap of microplastics (MPs) removal in recent studies on the water treatment stages of wastewater treatment plants (WWTPs) has achieved up to 90 % and diverted the retained MPs which then settled into sewage sludge (SS).. However, the effects of SS treatment stages and spatiotemporal factors can influence the concentration of MPs and remain insufficiently understood.. This study investigates the presence and spatiotemporal patterns of MPs in six WWTPs in Taiwan, especially on SS.

    Article Title: Changes of protein expression during tumorosphere formation of small cell lung cancer circulating tumor cells
    Article Snippet: Heatmaps were plotted for nine cell lines in the form of single cells and their tumorospheres using protein expression data of 43 cancer related proteins in the application heat map with dendrogram in Origin Version 9.9 (OriginLab Corporation, Northampton, MA, USA).

    Software:

    Article Title: Effect of microbial fertilizers on soil microbial community structure in rotating and continuous cropping Glycyrrhiza uralensis
    Article Snippet: One-way analysis of variance (ANOVA) was conducted using SPSS 27.0 software (SPSS Inc., Chicago, IL, USA) with a significance level of difference set at P <0.05, and multiple comparisons were carried out using the Duncan method. .. Cluster analysis used the Paiseno Gene Cloud platform ( https://www.genescloud.cn/login ) with 97% similarity threshold as the standard, and the chart production of the cluster analysis was made using the “Heat Map Dendrogram” tool in the Origin 2021 software (Origin Lab, Northampton, MA, USA). ..



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    Image Search Results


    Interaction map among single-nucleotide polymorphisms (SNPs) of genes on the risk of Acute lymphoblastic leukemia (ALL). Hierarchical clustering dendrogram (a) and Kamada-Kawai (b).

    Journal: Global Medical Genetics

    Article Title: Genetic susceptibility of IKZF1 , ARID5B , and CEBPE polymorphisms to childhood acute lymphoblastic leukemia in Chinese populations: a case-control study

    doi: 10.1016/j.gmg.2025.100084

    Figure Lengend Snippet: Interaction map among single-nucleotide polymorphisms (SNPs) of genes on the risk of Acute lymphoblastic leukemia (ALL). Hierarchical clustering dendrogram (a) and Kamada-Kawai (b).

    Article Snippet: Hierarchical clustering dendrogram (a) and Kamada-Kawai (b).

    Techniques:

    Example dendrogram for frequency band definition using hierarchical clustering Hierarchical clustering dendrogram derived from PFC ECoG signals. Frequency bins (y-axis) are grouped by the similarity of their temporal power profiles, measured by correlation distance (x-axis; smaller distance indicates higher similarity). Branch colors are visual aids automatically assigned by MATLAB. Brackets and labels illustrate an example of manually defined frequency bands (e.g., Theta, Alpha, Beta sub-bands, Gamma) resulting from user interpretation of the clustering structure. See also .

    Journal: STAR Protocols

    Article Title: Protocol for assisting frequency band definition and decoding neural dynamics using hierarchical clustering and multivariate pattern analysis

    doi: 10.1016/j.xpro.2025.103870

    Figure Lengend Snippet: Example dendrogram for frequency band definition using hierarchical clustering Hierarchical clustering dendrogram derived from PFC ECoG signals. Frequency bins (y-axis) are grouped by the similarity of their temporal power profiles, measured by correlation distance (x-axis; smaller distance indicates higher similarity). Branch colors are visual aids automatically assigned by MATLAB. Brackets and labels illustrate an example of manually defined frequency bands (e.g., Theta, Alpha, Beta sub-bands, Gamma) resulting from user interpretation of the clustering structure. See also .

    Article Snippet: Note: The dendrogram function in MATLAB automatically assigns colors to different branches based on the cluster hierarchy and the specified `ColorThreshold` parameter (default 0.5, adjustable by the user).

    Techniques: Derivative Assay

    Visualization of conventional and hierarchically derived frequency band boundaries on the average TFR (A) The average TFR of normalized ECoG power in the PFC is shown in both panels (color indicates normalized power). Overlaid horizontal dashed lines illustrate different frequency band definitions: the left panel depicts conventional band boundaries, while the right panel shows example boundaries derived from hierarchical clustering. (B) The hierarchical clustering dendrogram (same as ) is shown alongside for reference to the bands used in panel (A), right.

    Journal: STAR Protocols

    Article Title: Protocol for assisting frequency band definition and decoding neural dynamics using hierarchical clustering and multivariate pattern analysis

    doi: 10.1016/j.xpro.2025.103870

    Figure Lengend Snippet: Visualization of conventional and hierarchically derived frequency band boundaries on the average TFR (A) The average TFR of normalized ECoG power in the PFC is shown in both panels (color indicates normalized power). Overlaid horizontal dashed lines illustrate different frequency band definitions: the left panel depicts conventional band boundaries, while the right panel shows example boundaries derived from hierarchical clustering. (B) The hierarchical clustering dendrogram (same as ) is shown alongside for reference to the bands used in panel (A), right.

    Article Snippet: Note: The dendrogram function in MATLAB automatically assigns colors to different branches based on the cluster hierarchy and the specified `ColorThreshold` parameter (default 0.5, adjustable by the user).

    Techniques: Derivative Assay