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Epigenomics ag high-throughput dna sequencing approaches
High Throughput Dna Sequencing Approaches, supplied by Epigenomics ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/deep+sequencing+approach/high+throughput+sequencing/pmc08040079-216-0-5
Average 90 stars, based on 1 article reviews
high-throughput dna sequencing approaches - by Bioz Stars, 2026-10
90/100 stars

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Related Articles

DNA Sequencing:

Article Title: Non-coding RNAs regulating endothelial progenitor cells for venous thrombosis: promising therapy and innovation.
Article Snippet: Regulatory effects of non‐coding RNAs of EPCs involved in venous thrombosis High-throughput sequencing technology, epigenomics, gene prediction technology, and bioinformatics have developed rapidly in recent years.

Article Title: Milletomics: a metabolomics centered integrated omics approach toward genetic progression.
Article Snippet: It is predicted that there will be 9.8 billion people on the planet by 2050, which implies that food production must rise by 60–70% from its current level.. This presents an important challenge in terms of feeding the expanding population (Vetriventhan and Upadhyaya 2019).. Despite comprising a significant amount of many diets, major staple cereal grains such as wheat and rice have a lesser quantity of mineral constituents (micro and macro nutrients) (Tripathi et al. 2021).

Article Title: Multi-Omics-Based Discovery of Plant Signaling Molecules
Article Snippet: Epigenomics unitizes high-throughput technologies to decipher epigenome landscapes based on comprehensive analyses.

Article Title: Oral squamous cell carcinomas: state of the field and emerging directions
Article Snippet: Through the availability of a vast amount of information from transcriptomics, genomics, proteomics, epigenomics, and metabolomics, high-throughput sequencing technology will enable the development of novel therapeutic approaches for the treatment of OSCC.

Article Title: Multi-omics protein-coding units as massively parallel Bayesian networks: Empirical validation of causality structure
Article Snippet: In this article we use high-throughput epigenomics, transcriptomics, and proteomics data to construct fine-graded models of the “protein-coding units” gathering all transcript isoforms and chromatin accessibility peaks associated with more than 4000 genes in humans.

Article Title: Comparative physiological and transcriptomic analyses reveal ascorbate and glutathione coregulation of cadmium toxicity resistance in wheat genotypes
Article Snippet: With the development of molecular biology and genetic engineering (including metabolomics, epigenomics, CRISPR-Cas9, and high-throughput sequencing technologies), the identification of target genes that may help improve crop abiotic stress tolerance has been possible.

Article Title: Integrative analysis of transcriptome and miRNAome reveals molecular mechanisms regulating pericarp thickness in sweet corn during kernel development
Article Snippet: With the development of multi-omics (including genomics, epigenomics, and metabolomics), using high-throughput sequencing technology to explore the regulatory network of pericarp formation will comprehensively illuminate the concepts underlying pericarp thickness in sweet corn.

Article Title: Beyond genes‐for‐behaviour: The potential for genomics to resolve long‐standing questions in avian brood parasitism
Article Snippet: Epigenomics , DNA sequencing (e.g. CHIPseq, FAIREseq) , Study of epigenetic processes in the genome, such as methylation and altered expression rates , Understanding variation in behaviour that is not determined by genotype , Lehto and Tinghitella ( ) parent exposure to predation alters offspring mating behaviour in three‐spined sticklebacks Gasterosteus aculeatus , Battaglia ( ) for discussion on evolutionary implications and twin studies .

Methylation:

Article Title: Non-coding RNAs regulating endothelial progenitor cells for venous thrombosis: promising therapy and innovation.
Article Snippet: Regulatory effects of non‐coding RNAs of EPCs involved in venous thrombosis High-throughput sequencing technology, epigenomics, gene prediction technology, and bioinformatics have developed rapidly in recent years.

Article Title: Milletomics: a metabolomics centered integrated omics approach toward genetic progression.
Article Snippet: It is predicted that there will be 9.8 billion people on the planet by 2050, which implies that food production must rise by 60–70% from its current level.. This presents an important challenge in terms of feeding the expanding population (Vetriventhan and Upadhyaya 2019).. Despite comprising a significant amount of many diets, major staple cereal grains such as wheat and rice have a lesser quantity of mineral constituents (micro and macro nutrients) (Tripathi et al. 2021).

Article Title: Multi-Omics-Based Discovery of Plant Signaling Molecules
Article Snippet: Epigenomics unitizes high-throughput technologies to decipher epigenome landscapes based on comprehensive analyses.

Article Title: Oral squamous cell carcinomas: state of the field and emerging directions
Article Snippet: Through the availability of a vast amount of information from transcriptomics, genomics, proteomics, epigenomics, and metabolomics, high-throughput sequencing technology will enable the development of novel therapeutic approaches for the treatment of OSCC.

Article Title: Multi-omics protein-coding units as massively parallel Bayesian networks: Empirical validation of causality structure
Article Snippet: In this article we use high-throughput epigenomics, transcriptomics, and proteomics data to construct fine-graded models of the “protein-coding units” gathering all transcript isoforms and chromatin accessibility peaks associated with more than 4000 genes in humans.

Article Title: Comparative physiological and transcriptomic analyses reveal ascorbate and glutathione coregulation of cadmium toxicity resistance in wheat genotypes
Article Snippet: With the development of molecular biology and genetic engineering (including metabolomics, epigenomics, CRISPR-Cas9, and high-throughput sequencing technologies), the identification of target genes that may help improve crop abiotic stress tolerance has been possible.

Article Title: Integrative analysis of transcriptome and miRNAome reveals molecular mechanisms regulating pericarp thickness in sweet corn during kernel development
Article Snippet: With the development of multi-omics (including genomics, epigenomics, and metabolomics), using high-throughput sequencing technology to explore the regulatory network of pericarp formation will comprehensively illuminate the concepts underlying pericarp thickness in sweet corn.

Article Title: Beyond genes‐for‐behaviour: The potential for genomics to resolve long‐standing questions in avian brood parasitism
Article Snippet: Epigenomics , DNA sequencing (e.g. CHIPseq, FAIREseq) , Study of epigenetic processes in the genome, such as methylation and altered expression rates , Understanding variation in behaviour that is not determined by genotype , Lehto and Tinghitella ( ) parent exposure to predation alters offspring mating behaviour in three‐spined sticklebacks Gasterosteus aculeatus , Battaglia ( ) for discussion on evolutionary implications and twin studies .

Expressing:

Article Title: Non-coding RNAs regulating endothelial progenitor cells for venous thrombosis: promising therapy and innovation.
Article Snippet: Regulatory effects of non‐coding RNAs of EPCs involved in venous thrombosis High-throughput sequencing technology, epigenomics, gene prediction technology, and bioinformatics have developed rapidly in recent years.

Article Title: Milletomics: a metabolomics centered integrated omics approach toward genetic progression.
Article Snippet: It is predicted that there will be 9.8 billion people on the planet by 2050, which implies that food production must rise by 60–70% from its current level.. This presents an important challenge in terms of feeding the expanding population (Vetriventhan and Upadhyaya 2019).. Despite comprising a significant amount of many diets, major staple cereal grains such as wheat and rice have a lesser quantity of mineral constituents (micro and macro nutrients) (Tripathi et al. 2021).

Article Title: Multi-Omics-Based Discovery of Plant Signaling Molecules
Article Snippet: Epigenomics unitizes high-throughput technologies to decipher epigenome landscapes based on comprehensive analyses.

Article Title: Oral squamous cell carcinomas: state of the field and emerging directions
Article Snippet: Through the availability of a vast amount of information from transcriptomics, genomics, proteomics, epigenomics, and metabolomics, high-throughput sequencing technology will enable the development of novel therapeutic approaches for the treatment of OSCC.

Article Title: Multi-omics protein-coding units as massively parallel Bayesian networks: Empirical validation of causality structure
Article Snippet: In this article we use high-throughput epigenomics, transcriptomics, and proteomics data to construct fine-graded models of the “protein-coding units” gathering all transcript isoforms and chromatin accessibility peaks associated with more than 4000 genes in humans.

Article Title: Comparative physiological and transcriptomic analyses reveal ascorbate and glutathione coregulation of cadmium toxicity resistance in wheat genotypes
Article Snippet: With the development of molecular biology and genetic engineering (including metabolomics, epigenomics, CRISPR-Cas9, and high-throughput sequencing technologies), the identification of target genes that may help improve crop abiotic stress tolerance has been possible.

Article Title: Integrative analysis of transcriptome and miRNAome reveals molecular mechanisms regulating pericarp thickness in sweet corn during kernel development
Article Snippet: With the development of multi-omics (including genomics, epigenomics, and metabolomics), using high-throughput sequencing technology to explore the regulatory network of pericarp formation will comprehensively illuminate the concepts underlying pericarp thickness in sweet corn.

Article Title: Beyond genes‐for‐behaviour: The potential for genomics to resolve long‐standing questions in avian brood parasitism
Article Snippet: Epigenomics , DNA sequencing (e.g. CHIPseq, FAIREseq) , Study of epigenetic processes in the genome, such as methylation and altered expression rates , Understanding variation in behaviour that is not determined by genotype , Lehto and Tinghitella ( ) parent exposure to predation alters offspring mating behaviour in three‐spined sticklebacks Gasterosteus aculeatus , Battaglia ( ) for discussion on evolutionary implications and twin studies .

Biomarker Discovery:

Article Title: Non-coding RNAs regulating endothelial progenitor cells for venous thrombosis: promising therapy and innovation.
Article Snippet: Regulatory effects of non‐coding RNAs of EPCs involved in venous thrombosis High-throughput sequencing technology, epigenomics, gene prediction technology, and bioinformatics have developed rapidly in recent years.

Article Title: Milletomics: a metabolomics centered integrated omics approach toward genetic progression.
Article Snippet: It is predicted that there will be 9.8 billion people on the planet by 2050, which implies that food production must rise by 60–70% from its current level.. This presents an important challenge in terms of feeding the expanding population (Vetriventhan and Upadhyaya 2019).. Despite comprising a significant amount of many diets, major staple cereal grains such as wheat and rice have a lesser quantity of mineral constituents (micro and macro nutrients) (Tripathi et al. 2021).

Article Title: Multi-Omics-Based Discovery of Plant Signaling Molecules
Article Snippet: Epigenomics unitizes high-throughput technologies to decipher epigenome landscapes based on comprehensive analyses.

Article Title: Oral squamous cell carcinomas: state of the field and emerging directions
Article Snippet: Through the availability of a vast amount of information from transcriptomics, genomics, proteomics, epigenomics, and metabolomics, high-throughput sequencing technology will enable the development of novel therapeutic approaches for the treatment of OSCC.

Article Title: Multi-omics protein-coding units as massively parallel Bayesian networks: Empirical validation of causality structure
Article Snippet: In this article we use high-throughput epigenomics, transcriptomics, and proteomics data to construct fine-graded models of the “protein-coding units” gathering all transcript isoforms and chromatin accessibility peaks associated with more than 4000 genes in humans.

Article Title: Comparative physiological and transcriptomic analyses reveal ascorbate and glutathione coregulation of cadmium toxicity resistance in wheat genotypes
Article Snippet: With the development of molecular biology and genetic engineering (including metabolomics, epigenomics, CRISPR-Cas9, and high-throughput sequencing technologies), the identification of target genes that may help improve crop abiotic stress tolerance has been possible.

Article Title: Integrative analysis of transcriptome and miRNAome reveals molecular mechanisms regulating pericarp thickness in sweet corn during kernel development
Article Snippet: With the development of multi-omics (including genomics, epigenomics, and metabolomics), using high-throughput sequencing technology to explore the regulatory network of pericarp formation will comprehensively illuminate the concepts underlying pericarp thickness in sweet corn.

Article Title: Beyond genes‐for‐behaviour: The potential for genomics to resolve long‐standing questions in avian brood parasitism
Article Snippet: Epigenomics , DNA sequencing (e.g. CHIPseq, FAIREseq) , Study of epigenetic processes in the genome, such as methylation and altered expression rates , Understanding variation in behaviour that is not determined by genotype , Lehto and Tinghitella ( ) parent exposure to predation alters offspring mating behaviour in three‐spined sticklebacks Gasterosteus aculeatus , Battaglia ( ) for discussion on evolutionary implications and twin studies .

Next-Generation Sequencing:

Article Title: Non-coding RNAs regulating endothelial progenitor cells for venous thrombosis: promising therapy and innovation.
Article Snippet: Regulatory effects of non‐coding RNAs of EPCs involved in venous thrombosis High-throughput sequencing technology, epigenomics, gene prediction technology, and bioinformatics have developed rapidly in recent years.

Article Title: Milletomics: a metabolomics centered integrated omics approach toward genetic progression.
Article Snippet: It is predicted that there will be 9.8 billion people on the planet by 2050, which implies that food production must rise by 60–70% from its current level.. This presents an important challenge in terms of feeding the expanding population (Vetriventhan and Upadhyaya 2019).. Despite comprising a significant amount of many diets, major staple cereal grains such as wheat and rice have a lesser quantity of mineral constituents (micro and macro nutrients) (Tripathi et al. 2021).

Article Title: Multi-Omics-Based Discovery of Plant Signaling Molecules
Article Snippet: Epigenomics unitizes high-throughput technologies to decipher epigenome landscapes based on comprehensive analyses.

Article Title: Oral squamous cell carcinomas: state of the field and emerging directions
Article Snippet: Through the availability of a vast amount of information from transcriptomics, genomics, proteomics, epigenomics, and metabolomics, high-throughput sequencing technology will enable the development of novel therapeutic approaches for the treatment of OSCC.

Article Title: Multi-omics protein-coding units as massively parallel Bayesian networks: Empirical validation of causality structure
Article Snippet: In this article we use high-throughput epigenomics, transcriptomics, and proteomics data to construct fine-graded models of the “protein-coding units” gathering all transcript isoforms and chromatin accessibility peaks associated with more than 4000 genes in humans.

Article Title: Comparative physiological and transcriptomic analyses reveal ascorbate and glutathione coregulation of cadmium toxicity resistance in wheat genotypes
Article Snippet: With the development of molecular biology and genetic engineering (including metabolomics, epigenomics, CRISPR-Cas9, and high-throughput sequencing technologies), the identification of target genes that may help improve crop abiotic stress tolerance has been possible.

Article Title: Integrative analysis of transcriptome and miRNAome reveals molecular mechanisms regulating pericarp thickness in sweet corn during kernel development
Article Snippet: With the development of multi-omics (including genomics, epigenomics, and metabolomics), using high-throughput sequencing technology to explore the regulatory network of pericarp formation will comprehensively illuminate the concepts underlying pericarp thickness in sweet corn.

Article Title: Beyond genes‐for‐behaviour: The potential for genomics to resolve long‐standing questions in avian brood parasitism
Article Snippet: Epigenomics , DNA sequencing (e.g. CHIPseq, FAIREseq) , Study of epigenetic processes in the genome, such as methylation and altered expression rates , Understanding variation in behaviour that is not determined by genotype , Lehto and Tinghitella ( ) parent exposure to predation alters offspring mating behaviour in three‐spined sticklebacks Gasterosteus aculeatus , Battaglia ( ) for discussion on evolutionary implications and twin studies .

CRISPR:

Article Title: Non-coding RNAs regulating endothelial progenitor cells for venous thrombosis: promising therapy and innovation.
Article Snippet: Regulatory effects of non‐coding RNAs of EPCs involved in venous thrombosis High-throughput sequencing technology, epigenomics, gene prediction technology, and bioinformatics have developed rapidly in recent years.

Article Title: Milletomics: a metabolomics centered integrated omics approach toward genetic progression.
Article Snippet: It is predicted that there will be 9.8 billion people on the planet by 2050, which implies that food production must rise by 60–70% from its current level.. This presents an important challenge in terms of feeding the expanding population (Vetriventhan and Upadhyaya 2019).. Despite comprising a significant amount of many diets, major staple cereal grains such as wheat and rice have a lesser quantity of mineral constituents (micro and macro nutrients) (Tripathi et al. 2021).

Article Title: Multi-Omics-Based Discovery of Plant Signaling Molecules
Article Snippet: Epigenomics unitizes high-throughput technologies to decipher epigenome landscapes based on comprehensive analyses.

Article Title: Oral squamous cell carcinomas: state of the field and emerging directions
Article Snippet: Through the availability of a vast amount of information from transcriptomics, genomics, proteomics, epigenomics, and metabolomics, high-throughput sequencing technology will enable the development of novel therapeutic approaches for the treatment of OSCC.

Article Title: Multi-omics protein-coding units as massively parallel Bayesian networks: Empirical validation of causality structure
Article Snippet: In this article we use high-throughput epigenomics, transcriptomics, and proteomics data to construct fine-graded models of the “protein-coding units” gathering all transcript isoforms and chromatin accessibility peaks associated with more than 4000 genes in humans.

Article Title: Comparative physiological and transcriptomic analyses reveal ascorbate and glutathione coregulation of cadmium toxicity resistance in wheat genotypes
Article Snippet: With the development of molecular biology and genetic engineering (including metabolomics, epigenomics, CRISPR-Cas9, and high-throughput sequencing technologies), the identification of target genes that may help improve crop abiotic stress tolerance has been possible.

Article Title: Integrative analysis of transcriptome and miRNAome reveals molecular mechanisms regulating pericarp thickness in sweet corn during kernel development
Article Snippet: With the development of multi-omics (including genomics, epigenomics, and metabolomics), using high-throughput sequencing technology to explore the regulatory network of pericarp formation will comprehensively illuminate the concepts underlying pericarp thickness in sweet corn.

Article Title: Beyond genes‐for‐behaviour: The potential for genomics to resolve long‐standing questions in avian brood parasitism
Article Snippet: Epigenomics , DNA sequencing (e.g. CHIPseq, FAIREseq) , Study of epigenetic processes in the genome, such as methylation and altered expression rates , Understanding variation in behaviour that is not determined by genotype , Lehto and Tinghitella ( ) parent exposure to predation alters offspring mating behaviour in three‐spined sticklebacks Gasterosteus aculeatus , Battaglia ( ) for discussion on evolutionary implications and twin studies .



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Prevalence of errors at each nucleotide position within the entire viral protein-coding sequence (vCDS) from simplex and duplex reads. The nucleotide sequences were determined by nanopore sequencing using a mixture of three independent amplicons for HIV-1 NL4-3 or HIV-1 JRCSF propagated in cell cultures. The prevalence (%) of all mutations (ALL), substitutions (SUB), insertions (INS) and deletions (DEL) at each position in mixture from three is plotted. The horizontal dotted lines highlight the 15% prevalence threshold.

Journal: Scientific Reports

Article Title: Population-based nanopore sequencing of the HIV-1 pangenome to identify drug resistance mutations

doi: 10.1038/s41598-024-63054-3

Figure Lengend Snippet: Prevalence of errors at each nucleotide position within the entire viral protein-coding sequence (vCDS) from simplex and duplex reads. The nucleotide sequences were determined by nanopore sequencing using a mixture of three independent amplicons for HIV-1 NL4-3 or HIV-1 JRCSF propagated in cell cultures. The prevalence (%) of all mutations (ALL), substitutions (SUB), insertions (INS) and deletions (DEL) at each position in mixture from three is plotted. The horizontal dotted lines highlight the 15% prevalence threshold.

Article Snippet: In contrast, deep sequencing approaches based on Illumina or Ion Torrent technologies that have recently been developed for DR testing are able to detect less abundant mutations (~ 1%), although the clinical impact of detecting such low-abundance mutations remains controversial , .

Techniques: Sequencing, Nanopore Sequencing

Comparisons of nanopore sequencing DR data with archive DR test data obtained by Sanger sequencing. ( A ) Concordance rates (%) of the DR tests between Sanger and nanopore sequencing. The prevalence of detected DR to each drug is displayed with bar graphs. The “Concordant” and “Discordant” columns represent fully matched and inconsistent results between the two sequencing methods. LPV/r: lopinavir boosted with ritonavir, ATV: atazanavir, DRV: darunavir, RTV: ritonavir, ZDV: zidovudine, 3TC: lamivudine, FTC: emtricitabine, ABC: abacavir, TDF: tenofovir, TAF: tenofovir alafenamide, ISL: islatravir, EFV: efavirenz, NVP: nevirapine, ETR: etravirine, RPV: rilpivirine, DOR: doravirine, RAL: raltegravir, EVG: elvitegravir, DTG: dolutegravir, CAB: cabotegravir, BIC: bictegravir, LEN: lenacapavir. ( B ) Concordance rates of coreceptor tropism results based on V3 sequences between the two sequencing methods. The concordance rates of CXR4 (X4) tropism are displayed with a bar graph. Putative tropisms were determined by geno2pheno-C_NGS-Sanger ( https://coreceptor.geno2pheno.org/ ). ( C ) The concordance rates of nucleotide sequences in the pol PR-RT , pol IN, gag capsid, matrix and env c2c5 regions are plotted for each sample with medians and interquartile ranges.

Journal: Scientific Reports

Article Title: Population-based nanopore sequencing of the HIV-1 pangenome to identify drug resistance mutations

doi: 10.1038/s41598-024-63054-3

Figure Lengend Snippet: Comparisons of nanopore sequencing DR data with archive DR test data obtained by Sanger sequencing. ( A ) Concordance rates (%) of the DR tests between Sanger and nanopore sequencing. The prevalence of detected DR to each drug is displayed with bar graphs. The “Concordant” and “Discordant” columns represent fully matched and inconsistent results between the two sequencing methods. LPV/r: lopinavir boosted with ritonavir, ATV: atazanavir, DRV: darunavir, RTV: ritonavir, ZDV: zidovudine, 3TC: lamivudine, FTC: emtricitabine, ABC: abacavir, TDF: tenofovir, TAF: tenofovir alafenamide, ISL: islatravir, EFV: efavirenz, NVP: nevirapine, ETR: etravirine, RPV: rilpivirine, DOR: doravirine, RAL: raltegravir, EVG: elvitegravir, DTG: dolutegravir, CAB: cabotegravir, BIC: bictegravir, LEN: lenacapavir. ( B ) Concordance rates of coreceptor tropism results based on V3 sequences between the two sequencing methods. The concordance rates of CXR4 (X4) tropism are displayed with a bar graph. Putative tropisms were determined by geno2pheno-C_NGS-Sanger ( https://coreceptor.geno2pheno.org/ ). ( C ) The concordance rates of nucleotide sequences in the pol PR-RT , pol IN, gag capsid, matrix and env c2c5 regions are plotted for each sample with medians and interquartile ranges.

Article Snippet: In contrast, deep sequencing approaches based on Illumina or Ion Torrent technologies that have recently been developed for DR testing are able to detect less abundant mutations (~ 1%), although the clinical impact of detecting such low-abundance mutations remains controversial , .

Techniques: Nanopore Sequencing, Sequencing