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Biotechnology Information ncbi datasets command line tools
Ncbi Datasets Command Line Tools, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/datasets+command+line+tool/biotechnology+datasets+information+ncbi/pm42247255-49-71-69
Average 86 stars, based on 1 article reviews
ncbi datasets command line tools - by Bioz Stars, 2026-11
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Article Title: Characterization of Bifidobacterium hominis and proposal of Bifidobacterium catenulatum subsp. puerorum subsp. nov. isolated from human faeces.
Article Snippet: To assess the phylogenetic relationships of B. hominis, B. catenulatum subsp. puerorum, genomes sequences of available Bifidobacterium type strains (Table S1) and 37 closely related taxa strains (Tables 1 and S3) were retrieved from the NCBI (The National Center for Biotechnology Information) database using NCBI Datasets v16.11.0 [24] or NCBI- genome- download v0.2.12 [25].

Article Title: Historical isolates provide insights into the evolution of Acinetobacter baumannii international clone 2 and its resistome
Article Snippet: Publicly available A. baumannii genomes marked as ‘chromosome’ or ‘complete genome’ were retrieved using the National Centre for Biotechnology Information (NCBI) datasets utility ( ) (Accessed 24/05/2025).

Article Title: Accelerated biological aging underlies the link between heavy metal mixture exposure and depression: A multi-omics study.
Article Snippet: Growing evidence implicates accelerated biological aging in environmentally induced psychiatric disorders, yet its role in metal-associated depression remains unclear.. Using NHANES data, we evaluated associations between heavy metal mixtures and depression.. Bidirectional mediation analysis was used to assess reciprocal pathways linking heavy metals, biological aging, and depression.

Article Title: ClpP2 modulates ClpXP assembly to promote multiple pathogenic phenotypes in Pseudomonas aeruginosa .
Article Snippet: Publicly available P. aeruginosa genome assemblies were queried from the RefSeq and GenBank databases at the National Center for Biotechnology Information (NCBI) using the NCBI Datasets framework.

Article Title: ClpP2 modulates ClpXP assembly to promote multiple pathogenic phenotypes in Pseudomonas aeruginosa
Article Snippet: Publicly available P. aeruginosa genome assemblies were queried from the RefSeq and GenBank databases at the National Center for Biotechnology Information (NCBI) using the NCBI Datasets framework.

Inhibition:

Article Title: Genome mining of amylases and amylase inhibitors from Streptomyces .
Article Snippet: .. BGCs encoding amylase inhibitors were typically found alongside multiple amylases, including variants with amino acid motifs known to provide resistance to inhibition [16] as well as putative resistance variants. mETHoDS Phylogenetic analysis of amylases in Streptomyces A database of 295 Streptomyces genomes [21] (accession numbers found in File S6) was used for the analysis and the protein fasta files for each genome were downloaded with the National Center for Biotechnology Information (NCBI) datasets command- line tools (script: File S10, available in the online Supplementary Material). ..

Sequencing:

Article Title: Reference genome assemblies for the North American bumble bees Bombus flavifrons and Bombus fervidus, two phenotypically polymorphic species from distinct phylogenetic lineages.
Article Snippet: .. Bumble bees have thus been the focus of numerous genome sequencing efforts, 20 with 48 of the ~265 species globally now having genome assemblies in the National Center 21 D ow nloaded from https://academ ic.oup.com /g3journal/advance-article/doi/10.1093/g3journal/jkag041/8488716 by guest on 21 February 2026 for Biotechnology Information (NCBI) Genomes dataset at the time of this writing 1 (accessed 21 July 2025), although only 12 species have Reference Sequence Database 2 (RefSeq) level annotations. ..



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