Review




Structured Review

STARR Life Sciences starr-seq enrichments
Starr Seq Enrichments, supplied by STARR Life Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+science/starr+seq+data/pmc04250274-251-22-24
Average 90 stars, based on 1 article reviews
starr-seq enrichments - by Bioz Stars, 2026-10
90/100 stars

Images

Related Articles

Functional Assay:

Article Title: An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional Regulation
Article Snippet: We compared motif overlap between the two cell types using Fisher’s Exact test with FDR correction ( ) and visualized the top five most enriched transcription factor motifs in each cell type that appear in at least 10% of the respective K562+ or HepG2+ STARR distal enhancers ( ).

Article Title: Uncovering methylation-dependent genetic effects on regulatory element function in diverse genomes.
Article Snippet: We found that, on average, approximately 15× more unique SNPs can be analyzed when multiplexing 12 individuals as opposed to performing allele-specific analyses on only a single individual (as has been done previously in STARR-seq experiments) (Johnson et al. 2018).

Article Title: Uncovering the whole genome silencers of human cells via Ss-STARR-seq.
Article Snippet: Using the same analysis approach, we analyzed our previously published STARR-seq data22 (SCP1 promoter).

Article Title: Systematic functional characterization of non-coding regulatory SNPs associated with central obesity.
Article Snippet: ARTICLE Systematic functional characterization of non-coding regulatory SNPs associated with central obesity

Article Title: Functional characterization of transcriptional enhancers in an Anopheles genetic locus controlling natural resistance to the malaria parasite, Plasmodium falciparum.
Article Snippet: The analysis of genetic variation was performed on enhancers as defined by STARR-seq analysis.

Article Title: ChromActivity: integrative epigenomic and functional characterization assay based annotation of regulatory activity across diverse human cell types.
Article Snippet: The pairwise correlations of experts ranged from -0.14 to 0.90, with the extremes corresponding to experts trained on the pair Gasperini/K562 (CRISPR-based) and Wang/GM12878 (STARR-seq) and the pair White/A549 (STARR-seq) and White/HepG2 (STARR-seq), respectively.

Article Title: Non-canonical enhancers control gene expression and cell fate in human pluripotent stem cells
Article Snippet: Re-analysing publicly available genome-wide STARR-seq datasets , , , , we found that putative non-canonical enhancers (H3K27ac-, ATAC-seq+, STARR-seq+) can also readily be identified in human cancer cell lines (LnCAP, K562, HepG2, HeLa), and to a lesser extent in mouse embryonic stem cells and Drosophila S2 cells ( ).

Article Title: Uncovering the whole genome silencers of human cells via Ss-STARR-seq
Article Snippet: Using the same analysis approach, we analyzed our previously published STARR-seq data (SCP1 promoter).

Activity Assay:

Article Title: An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional Regulation
Article Snippet: We compared motif overlap between the two cell types using Fisher’s Exact test with FDR correction ( ) and visualized the top five most enriched transcription factor motifs in each cell type that appear in at least 10% of the respective K562+ or HepG2+ STARR distal enhancers ( ).

Article Title: Uncovering methylation-dependent genetic effects on regulatory element function in diverse genomes.
Article Snippet: We found that, on average, approximately 15× more unique SNPs can be analyzed when multiplexing 12 individuals as opposed to performing allele-specific analyses on only a single individual (as has been done previously in STARR-seq experiments) (Johnson et al. 2018).

Article Title: Uncovering the whole genome silencers of human cells via Ss-STARR-seq.
Article Snippet: Using the same analysis approach, we analyzed our previously published STARR-seq data22 (SCP1 promoter).

Article Title: Systematic functional characterization of non-coding regulatory SNPs associated with central obesity.
Article Snippet: ARTICLE Systematic functional characterization of non-coding regulatory SNPs associated with central obesity

Article Title: Functional characterization of transcriptional enhancers in an Anopheles genetic locus controlling natural resistance to the malaria parasite, Plasmodium falciparum.
Article Snippet: The analysis of genetic variation was performed on enhancers as defined by STARR-seq analysis.

Article Title: ChromActivity: integrative epigenomic and functional characterization assay based annotation of regulatory activity across diverse human cell types.
Article Snippet: The pairwise correlations of experts ranged from -0.14 to 0.90, with the extremes corresponding to experts trained on the pair Gasperini/K562 (CRISPR-based) and Wang/GM12878 (STARR-seq) and the pair White/A549 (STARR-seq) and White/HepG2 (STARR-seq), respectively.

Article Title: Non-canonical enhancers control gene expression and cell fate in human pluripotent stem cells
Article Snippet: Re-analysing publicly available genome-wide STARR-seq datasets , , , , we found that putative non-canonical enhancers (H3K27ac-, ATAC-seq+, STARR-seq+) can also readily be identified in human cancer cell lines (LnCAP, K562, HepG2, HeLa), and to a lesser extent in mouse embryonic stem cells and Drosophila S2 cells ( ).

Article Title: Uncovering the whole genome silencers of human cells via Ss-STARR-seq
Article Snippet: Using the same analysis approach, we analyzed our previously published STARR-seq data (SCP1 promoter).



Similar Products

96
TIBCO statistica software version 14 0 0 15
Statistica Software Version 14 0 0 15, supplied by TIBCO, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+science/TIBCO+Data+Science/pm42795155-105-20-24
Average 96 stars, based on 1 article reviews
statistica software version 14 0 0 15 - by Bioz Stars, 2026-10
96/100 stars
  Buy from Supplier

86
Kaggle Inc 2018 kaggle data science bowl
2018 Kaggle Data Science Bowl, supplied by Kaggle Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+science/2018+bowl+data+science/pmc13280720-82-2-3
Average 86 stars, based on 1 article reviews
2018 kaggle data science bowl - by Bioz Stars, 2026-10
86/100 stars
  Buy from Supplier

86
Data Sciences International data science international hardware
Data Science International Hardware, supplied by Data Sciences International, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+science/data+hardware+international+science/bio_rxiv__64898__2026__05__01__722324-254-25-25
Average 86 stars, based on 1 article reviews
data science international hardware - by Bioz Stars, 2026-10
86/100 stars
  Buy from Supplier

86
Jackson Laboratory jackson laboratory data science nextflow dsl2 workflows
Jackson Laboratory Data Science Nextflow Dsl2 Workflows, supplied by Jackson Laboratory, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+science/data+dsl2+jackson+laboratory+nextflow+science+workflows/bio_rxiv__64898__2026__05__02__722403-215-8-16
Average 86 stars, based on 1 article reviews
jackson laboratory data science nextflow dsl2 workflows - by Bioz Stars, 2026-10
86/100 stars
  Buy from Supplier

86
Novo Nordisk data science collaborative research programme 2022
Data Science Collaborative Research Programme 2022, supplied by Novo Nordisk, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+science/ascending+award+data+fonden+investigator591+science/pm41478891-407-27-35
Average 86 stars, based on 1 article reviews
data science collaborative research programme 2022 - by Bioz Stars, 2026-10
86/100 stars
  Buy from Supplier

86
Kaggle Inc 2018 data science bowl
2018 Data Science Bowl, supplied by Kaggle Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+science/2018+bowl+data+science/bio_rxiv__64898__2026__03__30__715415-10-1-7
Average 86 stars, based on 1 article reviews
2018 data science bowl - by Bioz Stars, 2026-10
86/100 stars
  Buy from Supplier

86
Kaggle Inc 2015 kaggle data science bowl
2015 Kaggle Data Science Bowl, supplied by Kaggle Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+science/2017+bowl+data+science/pm41882174-311-1-2
Average 86 stars, based on 1 article reviews
2015 kaggle data science bowl - by Bioz Stars, 2026-10
86/100 stars
  Buy from Supplier

99
STATA Corporation data science
Data Science, supplied by STATA Corporation, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+science/STATA+14%2E0/pm41860824-79-16-18
Average 99 stars, based on 1 article reviews
data science - by Bioz Stars, 2026-10
99/100 stars
  Buy from Supplier

86
Omics Data Automation integrative omics data science ciods
Integrative Omics Data Science Ciods, supplied by Omics Data Automation, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+science/ciods+data+integrative+omics+science/pm41857075-346-16-17
Average 86 stars, based on 1 article reviews
integrative omics data science ciods - by Bioz Stars, 2026-10
86/100 stars
  Buy from Supplier

Image Search Results