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Perlegen Sciences hapmap data
Table 1.
Hapmap Data, supplied by Perlegen Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+science/hapmap+data/pmc01310637-126-1-10
Average 90 stars, based on 1 article reviews
hapmap data - by Bioz Stars, 2026-09
90/100 stars

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1) Product Images from "Ascertainment bias in studies of human genome-wide polymorphism"

Article Title: Ascertainment bias in studies of human genome-wide polymorphism

Journal:

doi: 10.1101/gr.4107905

Table 1.
Figure Legend Snippet: Table 1.

Techniques Used:

Related Articles

other:

Article Title: Viability of in-house datamarting approaches for population genetics analysis of SNP genotypes
Article Snippet: HapMap data is rebuilt twice a year in contrast to Perlegen and the two CEPH databases, which appear to be static.

Article Title: Sequence diversity, natural selection and linkage disequilibrium in the human T cell receptor alpha/delta locus.
Article Snippet: T cell receptors (TR), through their interaction with the major histocompatibility complex, play a central role in immune responsiveness and potentially immune-related disorders.. We resequenced all 57 variable (V) genes in the human T cell receptor alpha and delta (TRA/TRD) locus in 40 individuals of Northern European, Mexican, African-American and Chinese descent.. Two hundred and eighty-four single nucleotide polymorphisms (SNPs) were identified.

Article Title: Constructing genomic maps of positive selection in humans: Where do we go from here?
Article Snippet: To this end, for eight recent studies performed on the HapMap and Perlegen data indicated in (which describes inclusion criteria), I obtained genomic positions for all reported autosomal loci under selection, mapped their positions to the same genomic build (UCSC hg18), and merged overlapping loci into a set of nonredundant positions.

Article Title: A New Approach for Using Genome Scans to Detect Recent Positive Selection in the Human Genome
Article Snippet: Candidate regions obtained from the HapMap and Perlegen data were merged to produce a single universal set of genomic regions exhibiting evidence of recent local selection.

Generated:

Article Title: Genome-Wide Analysis of Natural Selection on Human Cis-Elements
Article Snippet: We hypothesized that the loss of significance may be due to differences in data size (there is a ∼75% reduction in the number of SNPs from HapMap to Perlegen). .. To test this, we generated random samples of the HapMap data of size equal to the Perlegen data and repeated the DAF distribution test for each sample. .. We found that only ∼25% of the samples displayed statistical significance , which indicates that the lack of strong statistical significance in the Perlegen analysis could very well be explained by its smaller sample size.



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