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Structured Review

Oxford Nanopore raw sequencing output
Sphae workflow overview. The workflow processes <t>sequencing</t> reads from short- and/or long-read data in fastq format. The command sphae run, starts with quality control, filtering out low-quality reads and adaptor sequences. Processed reads are assembled, and the resulting assemblies are processed to confirm complete phage genomes in each sample. The phage genomes are annotated to identify the genes and assign biological functions. The final output folder contains the assembled genome (fasta format), annotations (GenBank format), a Circos plot (PNG format), and a summary text file detailing phage characteristics.
Raw Sequencing Output, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+raw+sequencing+data/pmc11783317-85-2-0?v=Oxford+Nanopore
Average 90 stars, based on 1 article reviews
raw sequencing output - by Bioz Stars, 2026-08
90/100 stars

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1) Product Images from "Sphae: an automated toolkit for predicting phage therapy candidates from sequencing data"

Article Title: Sphae: an automated toolkit for predicting phage therapy candidates from sequencing data

Journal: Bioinformatics Advances

doi: 10.1093/bioadv/vbaf004

Sphae workflow overview. The workflow processes sequencing reads from short- and/or long-read data in fastq format. The command sphae run, starts with quality control, filtering out low-quality reads and adaptor sequences. Processed reads are assembled, and the resulting assemblies are processed to confirm complete phage genomes in each sample. The phage genomes are annotated to identify the genes and assign biological functions. The final output folder contains the assembled genome (fasta format), annotations (GenBank format), a Circos plot (PNG format), and a summary text file detailing phage characteristics.
Figure Legend Snippet: Sphae workflow overview. The workflow processes sequencing reads from short- and/or long-read data in fastq format. The command sphae run, starts with quality control, filtering out low-quality reads and adaptor sequences. Processed reads are assembled, and the resulting assemblies are processed to confirm complete phage genomes in each sample. The phage genomes are annotated to identify the genes and assign biological functions. The final output folder contains the assembled genome (fasta format), annotations (GenBank format), a Circos plot (PNG format), and a summary text file detailing phage characteristics.

Techniques Used: Sequencing, Control



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