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BioNano Genomics custom assembler software
Custom Assembler Software, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/customer+programming+software/custom+assembler+software+program/bio_rxiv__102764-139-7-6
Average 90 stars, based on 1 article reviews
custom assembler software - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Software:

Article Title: Multi-site Technical Performance and Concordance of Optical Genome Mapping: Constitutional Postnatal Study for SV, CNV, and Repeat Array Analysis
Article Snippet: Genome analysis was performed using OGM specific pipelines, Bionano Access and Solve (versions 1.7 and 3.7, respectively), for data processing and variant calling. .. De novo assembly was performed using Bionano’s custom assembler software based on the Overlap-Layout-Consensus paradigm. ..

Article Title: Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus
Article Snippet: Briefly, automated optical genome mapping specific pipelines 195 consisting of Bionano Access v1.4.3 and Bionano Solve v. 3.6.1 were used for data 196 processing (BioNano Access Software User Guide). .. Hybrid scaffolding was performed 197 using Bionano’s custom software program implementing the following steps: 1) generate 198 in silico maps for sequence assembly; 2) align in silico sequence maps against Bionano 199 genome maps to identify and resolve potential conflicts in either data set; 3) merge the 200 non-conflicting maps into hybrid scaffolds; 4) align sequence maps to the hybrid scaffolds; 201 and 5) generate AGP and FASTA files for the scaffolds. ..

Article Title: Comparative Benchmarking of Optical Genome Mapping and Chromosomal Microarray Reveals High Technological Concordance in CNV Identification and Additional Structural Variant Refinement.
Article Snippet: .. De novo assembly was performed using Bionano’s custom assembler software program based on the Overlap-Layout-Consensus paradigm. ..

Article Title: Rapid Automated Large Structural Variation Detection in a Diploid Genome by NanoChannel Based Next-Generation Mapping
Article Snippet: .. De Novo assembly was performed using BioNano’s custom assembler software based on the Overlap-Layout-Consensus paradigm. ..

Article Title: Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus
Article Snippet: Briefly, automated optical genome mapping specific pipelines 187 consisting of Bionano Access v1.4.3 and Bionano Solve v. 3.6.1 were used for data 188 processing (BioNano Access Software User Guide). .. Hybrid scaffolding was performed 189 using Bionano’s custom software program implementing the following steps: 1) generate 190 in silico maps for sequence assembly; 2) align in silico sequence maps against Bionano 191 genome maps to identify and resolve potential conflicts in either data set; 3) merge the 192 non-conflicting maps into hybrid scaffolds; 4) align sequence maps to the hybrid scaffolds; 193 and 5) generate AGP and FASTA files for the scaffolds. ..

Article Title: Whole-genome mutational burden analysis of three pluripotency induction methods
Article Snippet: .. De novo assembly of single molecules is accomplished using BioNano's custom assembler software program based on an Overlap-Layout-Consensus paradigm . ..

Article Title: Optical Genome Mapping as a Potential Routine Clinical Diagnostic Method
Article Snippet: .. De novo assembly was performed using Bionano’s custom assembler software program to generate consensus genome maps (*.cmap). ..

Scaffolding:

Article Title: Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus
Article Snippet: Briefly, automated optical genome mapping specific pipelines 195 consisting of Bionano Access v1.4.3 and Bionano Solve v. 3.6.1 were used for data 196 processing (BioNano Access Software User Guide). .. Hybrid scaffolding was performed 197 using Bionano’s custom software program implementing the following steps: 1) generate 198 in silico maps for sequence assembly; 2) align in silico sequence maps against Bionano 199 genome maps to identify and resolve potential conflicts in either data set; 3) merge the 200 non-conflicting maps into hybrid scaffolds; 4) align sequence maps to the hybrid scaffolds; 201 and 5) generate AGP and FASTA files for the scaffolds. ..

Article Title: Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus
Article Snippet: Briefly, automated optical genome mapping specific pipelines 187 consisting of Bionano Access v1.4.3 and Bionano Solve v. 3.6.1 were used for data 188 processing (BioNano Access Software User Guide). .. Hybrid scaffolding was performed 189 using Bionano’s custom software program implementing the following steps: 1) generate 190 in silico maps for sequence assembly; 2) align in silico sequence maps against Bionano 191 genome maps to identify and resolve potential conflicts in either data set; 3) merge the 192 non-conflicting maps into hybrid scaffolds; 4) align sequence maps to the hybrid scaffolds; 193 and 5) generate AGP and FASTA files for the scaffolds. ..

Article Title: Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus
Article Snippet: Briefly, automated optical genome mapping specific pipelines consisting of Bionano Access v1.4.3 and Bionano Solve v. 3.6.1 were used for data processing (Bionano Access Software User Guide https://bionanogenomics.com/wp-content/uploads/2018/04/30142-Bionano-Access-Software-User-Guide.pdf ). .. Hybrid scaffolding was performed using Bionano's custom software program implementing the following steps: (i) generate in silico maps for sequence assembly; (ii) align in silico sequence maps against Bionano genome maps to identify and resolve potential conflicts in either dataset; (iii) merge the non-conflicting maps into hybrid scaffolds; (iv) align sequence maps to the hybrid scaffolds; and (v) generate AGP and FASTA files for the scaffolds. ..

In Silico:

Article Title: Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus
Article Snippet: Briefly, automated optical genome mapping specific pipelines 195 consisting of Bionano Access v1.4.3 and Bionano Solve v. 3.6.1 were used for data 196 processing (BioNano Access Software User Guide). .. Hybrid scaffolding was performed 197 using Bionano’s custom software program implementing the following steps: 1) generate 198 in silico maps for sequence assembly; 2) align in silico sequence maps against Bionano 199 genome maps to identify and resolve potential conflicts in either data set; 3) merge the 200 non-conflicting maps into hybrid scaffolds; 4) align sequence maps to the hybrid scaffolds; 201 and 5) generate AGP and FASTA files for the scaffolds. ..

Article Title: Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus
Article Snippet: Briefly, automated optical genome mapping specific pipelines 187 consisting of Bionano Access v1.4.3 and Bionano Solve v. 3.6.1 were used for data 188 processing (BioNano Access Software User Guide). .. Hybrid scaffolding was performed 189 using Bionano’s custom software program implementing the following steps: 1) generate 190 in silico maps for sequence assembly; 2) align in silico sequence maps against Bionano 191 genome maps to identify and resolve potential conflicts in either data set; 3) merge the 192 non-conflicting maps into hybrid scaffolds; 4) align sequence maps to the hybrid scaffolds; 193 and 5) generate AGP and FASTA files for the scaffolds. ..

Article Title: Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus
Article Snippet: Briefly, automated optical genome mapping specific pipelines consisting of Bionano Access v1.4.3 and Bionano Solve v. 3.6.1 were used for data processing (Bionano Access Software User Guide https://bionanogenomics.com/wp-content/uploads/2018/04/30142-Bionano-Access-Software-User-Guide.pdf ). .. Hybrid scaffolding was performed using Bionano's custom software program implementing the following steps: (i) generate in silico maps for sequence assembly; (ii) align in silico sequence maps against Bionano genome maps to identify and resolve potential conflicts in either dataset; (iii) merge the non-conflicting maps into hybrid scaffolds; (iv) align sequence maps to the hybrid scaffolds; and (v) generate AGP and FASTA files for the scaffolds. ..

Sequencing:

Article Title: Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus
Article Snippet: Briefly, automated optical genome mapping specific pipelines 195 consisting of Bionano Access v1.4.3 and Bionano Solve v. 3.6.1 were used for data 196 processing (BioNano Access Software User Guide). .. Hybrid scaffolding was performed 197 using Bionano’s custom software program implementing the following steps: 1) generate 198 in silico maps for sequence assembly; 2) align in silico sequence maps against Bionano 199 genome maps to identify and resolve potential conflicts in either data set; 3) merge the 200 non-conflicting maps into hybrid scaffolds; 4) align sequence maps to the hybrid scaffolds; 201 and 5) generate AGP and FASTA files for the scaffolds. ..

Article Title: Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus
Article Snippet: Briefly, automated optical genome mapping specific pipelines 187 consisting of Bionano Access v1.4.3 and Bionano Solve v. 3.6.1 were used for data 188 processing (BioNano Access Software User Guide). .. Hybrid scaffolding was performed 189 using Bionano’s custom software program implementing the following steps: 1) generate 190 in silico maps for sequence assembly; 2) align in silico sequence maps against Bionano 191 genome maps to identify and resolve potential conflicts in either data set; 3) merge the 192 non-conflicting maps into hybrid scaffolds; 4) align sequence maps to the hybrid scaffolds; 193 and 5) generate AGP and FASTA files for the scaffolds. ..

Article Title: Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus
Article Snippet: Briefly, automated optical genome mapping specific pipelines consisting of Bionano Access v1.4.3 and Bionano Solve v. 3.6.1 were used for data processing (Bionano Access Software User Guide https://bionanogenomics.com/wp-content/uploads/2018/04/30142-Bionano-Access-Software-User-Guide.pdf ). .. Hybrid scaffolding was performed using Bionano's custom software program implementing the following steps: (i) generate in silico maps for sequence assembly; (ii) align in silico sequence maps against Bionano genome maps to identify and resolve potential conflicts in either dataset; (iii) merge the non-conflicting maps into hybrid scaffolds; (iv) align sequence maps to the hybrid scaffolds; and (v) generate AGP and FASTA files for the scaffolds. ..



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