custom microarray with exon-level resolution (Illumina Inc)

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Illumina Inc custom microarray with exon-level resolution
Custom Microarray With Exon Level Resolution, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/custom+microarray+with+exon-level+resolution/exon+array/pmc08414803-56-4-9
Average 90 stars, based on 1 article reviews

custom microarray with exon-level resolution - by Bioz Stars, 2026-10

90/100 stars

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Article Title: Expression of GBGT1 is epigenetically regulated by DNA methylation in ovarian cancer cells
Article Snippet: GBGT1 expression was measured using the Huex-1_0-st-V2 exon array (n = 583 primary tumors overlapping with DNA methylation data) and Illumina HiSeq RNA-Seq (n = 265 primary tumors overlapping with DNA methylation data) platforms.

Article Title: Platform-integrated mRNA isoform quantification
Article Snippet: The complete lists of the cancer cell lines for each platform in this project is available in and Supplementary Table S1 . table ft1 table-wrap mode="anchored" t5 Table 2. caption a7 Number of cell lines Number of genes/isoforms Resource Platform NanoString 46 99/304 nCounter RNA-Seq 46 19278/50470 CCLE Illumina HiSeq 2000 Exon-array 28 3317/9400 GEO Affy HuEx.1.0.st.v2 RT-qPCR 12 7/14 Open in a separate window Summary of cell lines in each platform 3.1.1 RNA-Seq data preprocessing The raw Bam files of the 46 CCLE (Cancer Cell Line Encyclopedia) cancer cell lines ( Barretina et al. , 2012 ) were downloaded from NCI GDC Legacy Archive ( Grossman et al. , 2016 ).

Article Title: Rare disruptive mutations and their contribution to the heritable risk of colorectal cancer
Article Snippet: The Illumina Exome array data comprised Infinium Human Exome BeadChip 12v1.0 or 12v1.1 exon array data on 5,552 UK cases and 6,792 UK controls, which we have previously reported .

Article Title: Non-coding cause of congenital heart defects: Abnormal RNA splicing with multiple isoforms as a mechanism for heterotaxy
Article Snippet: X-exome sequencing of individuals in X-linked heterotaxy pedigree Copy number variation analysis using Illumina genome-wide SNP array and exon-targeted array comparative genomic hybridization of one affected male individual (IV-1) was performed in 2012 prior to the availability of full exome sequencing.

Microarray:

Article Title: Identification of Potential Genomic Alterations and the circRNA-miRNA-mRNA Regulatory Network in Primary and Recurrent Synovial Sarcomas
Article Snippet: .. A custom microarray with exon-level resolution was investigated using Illumina Human Exome-12v1.1 to identify gross deletions and duplications. ..

RNA sequencing:

Article Title: Integrative computational analysis of transcriptional and epigenetic alterations implicates DTX1 as a putative tumor suppressor gene in HNSCC
Article Snippet: .. To improve the candidate discovery pipeline, we employed both single-institution and multi-institutional HNSCC cohorts, and utilized diverse detection platforms: Illumina exon array, RNA-Seq and qRT-PCR for gene expression; and Methylation arrays 27 and 450, as well as bisulfite sequencing for DNA methylation. ..

Quantitative RT-PCR:

Gene Expression:

Methylation:

Methylation Sequencing:

DNA Methylation Assay:

Formalin-fixed Paraffin-Embedded:

Article Title: Identification of potential mutations and genomic alterations in the epithelial and spindle cell components of biphasic synovial sarcomas using a human exome SNP chip
Article Snippet: .. We conducted a comprehensive genomic analysis of mesenchymal and epithelial components in 12 formalin-fixed paraffin-embedded biphasic SS samples using the Illumina human exon microarray. .. Exome capture sequencing was performed to validate the single nucleotide polymorphism (SNP)-chip data, and de novo data were generated using a whole-exome chip with the Illumina exon microarray.

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