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ct analyzer software ctan  (Skyscan Corporation)

 
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    Skyscan Corporation ct analyzer software ctan
    Ct Analyzer Software Ctan, supplied by Skyscan Corporation, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ct-analyzer+software/analyzer+ct+software/pm41177200-92-3-9
    Average 86 stars, based on 1 article reviews
    ct analyzer software ctan - by Bioz Stars, 2026-11
    86/100 stars

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    Related Articles

    Sequencing:

    Article Title: Therapeutic base editing alleviates restrictive cardiomyopathy.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Oligonucleotides See Table S1 for sgRNA sequence This paper N/A See Table S2 for oligos used in genotyping, RT-qPCR, and NGS This paper N/A Recombinant DNA Lenti-V2-Tnni3 (c.578G>A) This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-N ter This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-C ter This paper N/A pLX-sgRNAs This paper N/A Cbh_v5 AAV-ABE N-terminal Addgene Cat#137177 Cbh_v5 AAV-ABE C-terminal Addgene Cat#137178 Software and algorithms GraphPad Prism 10 GraphPad http://www.graphpad.com/ HISAT2 v2.0.5 HISAT2 https://daehwankimlab.github.io/hisat2/ GSVA, v2.0.7 GSVA https://github.com/rcastelo/GSVA R (v4.4.2) R code http://www.r-project.org/ NRecon SkyScan Bruker microCT 2012-16, Version: 1.7.3.1 cTAn CT Analyzer Version: 1.17.7.2+ (64-bit) cTvol Realistic 3D-Visualization Version: 2.3.2.0 (64-bit) Cell Reports Medicine 7, 102639, March 17, 2026 e2 OPEN ACCESS Generation of Tnni3 R193H/R193H mice To evaluate the pathogenicity of the homozygous p.R192H variant in the TNNI3 gene, we generated a CRISPR/Cas9-mediated transgenic mouse model harboring the corresponding mutation p.R193H. .. The Tnni3 R193H knock-in model was created on a C57BL/6 J mouse strain (JAX #000664).

    Next-Generation Sequencing:

    Article Title: Therapeutic base editing alleviates restrictive cardiomyopathy.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Oligonucleotides See Table S1 for sgRNA sequence This paper N/A See Table S2 for oligos used in genotyping, RT-qPCR, and NGS This paper N/A Recombinant DNA Lenti-V2-Tnni3 (c.578G>A) This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-N ter This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-C ter This paper N/A pLX-sgRNAs This paper N/A Cbh_v5 AAV-ABE N-terminal Addgene Cat#137177 Cbh_v5 AAV-ABE C-terminal Addgene Cat#137178 Software and algorithms GraphPad Prism 10 GraphPad http://www.graphpad.com/ HISAT2 v2.0.5 HISAT2 https://daehwankimlab.github.io/hisat2/ GSVA, v2.0.7 GSVA https://github.com/rcastelo/GSVA R (v4.4.2) R code http://www.r-project.org/ NRecon SkyScan Bruker microCT 2012-16, Version: 1.7.3.1 cTAn CT Analyzer Version: 1.17.7.2+ (64-bit) cTvol Realistic 3D-Visualization Version: 2.3.2.0 (64-bit) Cell Reports Medicine 7, 102639, March 17, 2026 e2 OPEN ACCESS Generation of Tnni3 R193H/R193H mice To evaluate the pathogenicity of the homozygous p.R192H variant in the TNNI3 gene, we generated a CRISPR/Cas9-mediated transgenic mouse model harboring the corresponding mutation p.R193H. .. The Tnni3 R193H knock-in model was created on a C57BL/6 J mouse strain (JAX #000664).

    Recombinant:

    Article Title: Therapeutic base editing alleviates restrictive cardiomyopathy.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Oligonucleotides See Table S1 for sgRNA sequence This paper N/A See Table S2 for oligos used in genotyping, RT-qPCR, and NGS This paper N/A Recombinant DNA Lenti-V2-Tnni3 (c.578G>A) This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-N ter This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-C ter This paper N/A pLX-sgRNAs This paper N/A Cbh_v5 AAV-ABE N-terminal Addgene Cat#137177 Cbh_v5 AAV-ABE C-terminal Addgene Cat#137178 Software and algorithms GraphPad Prism 10 GraphPad http://www.graphpad.com/ HISAT2 v2.0.5 HISAT2 https://daehwankimlab.github.io/hisat2/ GSVA, v2.0.7 GSVA https://github.com/rcastelo/GSVA R (v4.4.2) R code http://www.r-project.org/ NRecon SkyScan Bruker microCT 2012-16, Version: 1.7.3.1 cTAn CT Analyzer Version: 1.17.7.2+ (64-bit) cTvol Realistic 3D-Visualization Version: 2.3.2.0 (64-bit) Cell Reports Medicine 7, 102639, March 17, 2026 e2 OPEN ACCESS Generation of Tnni3 R193H/R193H mice To evaluate the pathogenicity of the homozygous p.R192H variant in the TNNI3 gene, we generated a CRISPR/Cas9-mediated transgenic mouse model harboring the corresponding mutation p.R193H. .. The Tnni3 R193H knock-in model was created on a C57BL/6 J mouse strain (JAX #000664).

    Bioprocessing:

    Article Title: Therapeutic base editing alleviates restrictive cardiomyopathy.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Oligonucleotides See Table S1 for sgRNA sequence This paper N/A See Table S2 for oligos used in genotyping, RT-qPCR, and NGS This paper N/A Recombinant DNA Lenti-V2-Tnni3 (c.578G>A) This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-N ter This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-C ter This paper N/A pLX-sgRNAs This paper N/A Cbh_v5 AAV-ABE N-terminal Addgene Cat#137177 Cbh_v5 AAV-ABE C-terminal Addgene Cat#137178 Software and algorithms GraphPad Prism 10 GraphPad http://www.graphpad.com/ HISAT2 v2.0.5 HISAT2 https://daehwankimlab.github.io/hisat2/ GSVA, v2.0.7 GSVA https://github.com/rcastelo/GSVA R (v4.4.2) R code http://www.r-project.org/ NRecon SkyScan Bruker microCT 2012-16, Version: 1.7.3.1 cTAn CT Analyzer Version: 1.17.7.2+ (64-bit) cTvol Realistic 3D-Visualization Version: 2.3.2.0 (64-bit) Cell Reports Medicine 7, 102639, March 17, 2026 e2 OPEN ACCESS Generation of Tnni3 R193H/R193H mice To evaluate the pathogenicity of the homozygous p.R192H variant in the TNNI3 gene, we generated a CRISPR/Cas9-mediated transgenic mouse model harboring the corresponding mutation p.R193H. .. The Tnni3 R193H knock-in model was created on a C57BL/6 J mouse strain (JAX #000664).

    Software:

    Article Title: Therapeutic base editing alleviates restrictive cardiomyopathy.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Oligonucleotides See Table S1 for sgRNA sequence This paper N/A See Table S2 for oligos used in genotyping, RT-qPCR, and NGS This paper N/A Recombinant DNA Lenti-V2-Tnni3 (c.578G>A) This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-N ter This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-C ter This paper N/A pLX-sgRNAs This paper N/A Cbh_v5 AAV-ABE N-terminal Addgene Cat#137177 Cbh_v5 AAV-ABE C-terminal Addgene Cat#137178 Software and algorithms GraphPad Prism 10 GraphPad http://www.graphpad.com/ HISAT2 v2.0.5 HISAT2 https://daehwankimlab.github.io/hisat2/ GSVA, v2.0.7 GSVA https://github.com/rcastelo/GSVA R (v4.4.2) R code http://www.r-project.org/ NRecon SkyScan Bruker microCT 2012-16, Version: 1.7.3.1 cTAn CT Analyzer Version: 1.17.7.2+ (64-bit) cTvol Realistic 3D-Visualization Version: 2.3.2.0 (64-bit) Cell Reports Medicine 7, 102639, March 17, 2026 e2 OPEN ACCESS Generation of Tnni3 R193H/R193H mice To evaluate the pathogenicity of the homozygous p.R192H variant in the TNNI3 gene, we generated a CRISPR/Cas9-mediated transgenic mouse model harboring the corresponding mutation p.R193H. .. The Tnni3 R193H knock-in model was created on a C57BL/6 J mouse strain (JAX #000664).

    Article Title: Effect of photobiomodulation on femoral fracture specimens in rats with experimentally induced osteoporosis.
    Article Snippet: Bone repairing is a complex mechanism that demands good bodily conditions to happen; however, some systemic conditions can negatively influence this process, such as some chronic inflammatory conditions and changes in the microarchitecture of bone tissue.. This study aims to evaluate the potential of Photobiomodulation (PBM) therapy using an infrared diode laser (808 nm) in the bone repair of femoral fractures in osteoporotic rats.. A total of 24 adult rats, aged 6 months old, were initially subjected to bilateral ovariectomy, to induce osteoporosis.

    Article Title: Britanin-loaded mesoporous silica nanoparticles: a novel approach for enhanced bone regeneration
    Article Snippet: Image reconstruction was carried out using NRecon software (v1.6.8.0, SkyScan). .. Quantitative analysis of the femoral defect region was conducted with CT Analyzer software (v1.12.0, SkyScan) to determine bone mineral density (BMD), bone volume fraction (BV/TV), trabecular spacing (Tb.Sp), and trabecular thickness (Tb.Th). ..

    Article Title: Lipolysis of host triacylglyceride-rich lipoproteins creates a toxic microenvironment for Staphylococcus aureus
    Article Snippet: Reconstruction was done using the Skyscan N-Recon software. .. The Skyscan CT-analyzer software was used to process the reconstructed cross-sectional slices and create preliminary ROIs of just the cortical bone using a semiautomated protocol, as follows: global thresholding (lowL=L90; highL=L255), round closing in 3D space pixel size 4, round opening in 3D space, pixel size 1, round closing in 3D space, pixel size 8, and round dilation in 3D space pixel size 3. ..

    Article Title: ILC3 inhibits Osteoclastogenesis and ameliorates Inflammatory Bone Loss in Post-menopausal Osteoporosis
    Article Snippet: .. CT Analyzer software (version 1.02; SkyScan) was used for morphometric quantification of trabecular and cortical bone indices. ..

    Article Title: Targeting TRPV6/CXCR4 complexes prevents castration-resistant prostate cancer metastasis to the bone
    Article Snippet: Twenty-four hours posttransfection, luminescence activity was assessed with the Nano-Glo Dual-Luciferase Reporter (NanoDLR) Assay System (Promega, WI, USA). .. Quantification of the proximal metaphysis bone microarchitecture (BMA) below the growth plate was performed via CT-Analyzer software (SkyScan, release 1.20.8.0). ..

    Variant Assay:

    Article Title: Therapeutic base editing alleviates restrictive cardiomyopathy.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Oligonucleotides See Table S1 for sgRNA sequence This paper N/A See Table S2 for oligos used in genotyping, RT-qPCR, and NGS This paper N/A Recombinant DNA Lenti-V2-Tnni3 (c.578G>A) This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-N ter This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-C ter This paper N/A pLX-sgRNAs This paper N/A Cbh_v5 AAV-ABE N-terminal Addgene Cat#137177 Cbh_v5 AAV-ABE C-terminal Addgene Cat#137178 Software and algorithms GraphPad Prism 10 GraphPad http://www.graphpad.com/ HISAT2 v2.0.5 HISAT2 https://daehwankimlab.github.io/hisat2/ GSVA, v2.0.7 GSVA https://github.com/rcastelo/GSVA R (v4.4.2) R code http://www.r-project.org/ NRecon SkyScan Bruker microCT 2012-16, Version: 1.7.3.1 cTAn CT Analyzer Version: 1.17.7.2+ (64-bit) cTvol Realistic 3D-Visualization Version: 2.3.2.0 (64-bit) Cell Reports Medicine 7, 102639, March 17, 2026 e2 OPEN ACCESS Generation of Tnni3 R193H/R193H mice To evaluate the pathogenicity of the homozygous p.R192H variant in the TNNI3 gene, we generated a CRISPR/Cas9-mediated transgenic mouse model harboring the corresponding mutation p.R193H. .. The Tnni3 R193H knock-in model was created on a C57BL/6 J mouse strain (JAX #000664).

    Generated:

    Article Title: Therapeutic base editing alleviates restrictive cardiomyopathy.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Oligonucleotides See Table S1 for sgRNA sequence This paper N/A See Table S2 for oligos used in genotyping, RT-qPCR, and NGS This paper N/A Recombinant DNA Lenti-V2-Tnni3 (c.578G>A) This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-N ter This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-C ter This paper N/A pLX-sgRNAs This paper N/A Cbh_v5 AAV-ABE N-terminal Addgene Cat#137177 Cbh_v5 AAV-ABE C-terminal Addgene Cat#137178 Software and algorithms GraphPad Prism 10 GraphPad http://www.graphpad.com/ HISAT2 v2.0.5 HISAT2 https://daehwankimlab.github.io/hisat2/ GSVA, v2.0.7 GSVA https://github.com/rcastelo/GSVA R (v4.4.2) R code http://www.r-project.org/ NRecon SkyScan Bruker microCT 2012-16, Version: 1.7.3.1 cTAn CT Analyzer Version: 1.17.7.2+ (64-bit) cTvol Realistic 3D-Visualization Version: 2.3.2.0 (64-bit) Cell Reports Medicine 7, 102639, March 17, 2026 e2 OPEN ACCESS Generation of Tnni3 R193H/R193H mice To evaluate the pathogenicity of the homozygous p.R192H variant in the TNNI3 gene, we generated a CRISPR/Cas9-mediated transgenic mouse model harboring the corresponding mutation p.R193H. .. The Tnni3 R193H knock-in model was created on a C57BL/6 J mouse strain (JAX #000664).

    CRISPR:

    Article Title: Therapeutic base editing alleviates restrictive cardiomyopathy.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Oligonucleotides See Table S1 for sgRNA sequence This paper N/A See Table S2 for oligos used in genotyping, RT-qPCR, and NGS This paper N/A Recombinant DNA Lenti-V2-Tnni3 (c.578G>A) This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-N ter This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-C ter This paper N/A pLX-sgRNAs This paper N/A Cbh_v5 AAV-ABE N-terminal Addgene Cat#137177 Cbh_v5 AAV-ABE C-terminal Addgene Cat#137178 Software and algorithms GraphPad Prism 10 GraphPad http://www.graphpad.com/ HISAT2 v2.0.5 HISAT2 https://daehwankimlab.github.io/hisat2/ GSVA, v2.0.7 GSVA https://github.com/rcastelo/GSVA R (v4.4.2) R code http://www.r-project.org/ NRecon SkyScan Bruker microCT 2012-16, Version: 1.7.3.1 cTAn CT Analyzer Version: 1.17.7.2+ (64-bit) cTvol Realistic 3D-Visualization Version: 2.3.2.0 (64-bit) Cell Reports Medicine 7, 102639, March 17, 2026 e2 OPEN ACCESS Generation of Tnni3 R193H/R193H mice To evaluate the pathogenicity of the homozygous p.R192H variant in the TNNI3 gene, we generated a CRISPR/Cas9-mediated transgenic mouse model harboring the corresponding mutation p.R193H. .. The Tnni3 R193H knock-in model was created on a C57BL/6 J mouse strain (JAX #000664).

    Transgenic Assay:

    Article Title: Therapeutic base editing alleviates restrictive cardiomyopathy.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Oligonucleotides See Table S1 for sgRNA sequence This paper N/A See Table S2 for oligos used in genotyping, RT-qPCR, and NGS This paper N/A Recombinant DNA Lenti-V2-Tnni3 (c.578G>A) This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-N ter This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-C ter This paper N/A pLX-sgRNAs This paper N/A Cbh_v5 AAV-ABE N-terminal Addgene Cat#137177 Cbh_v5 AAV-ABE C-terminal Addgene Cat#137178 Software and algorithms GraphPad Prism 10 GraphPad http://www.graphpad.com/ HISAT2 v2.0.5 HISAT2 https://daehwankimlab.github.io/hisat2/ GSVA, v2.0.7 GSVA https://github.com/rcastelo/GSVA R (v4.4.2) R code http://www.r-project.org/ NRecon SkyScan Bruker microCT 2012-16, Version: 1.7.3.1 cTAn CT Analyzer Version: 1.17.7.2+ (64-bit) cTvol Realistic 3D-Visualization Version: 2.3.2.0 (64-bit) Cell Reports Medicine 7, 102639, March 17, 2026 e2 OPEN ACCESS Generation of Tnni3 R193H/R193H mice To evaluate the pathogenicity of the homozygous p.R192H variant in the TNNI3 gene, we generated a CRISPR/Cas9-mediated transgenic mouse model harboring the corresponding mutation p.R193H. .. The Tnni3 R193H knock-in model was created on a C57BL/6 J mouse strain (JAX #000664).

    Mutagenesis:

    Article Title: Therapeutic base editing alleviates restrictive cardiomyopathy.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Oligonucleotides See Table S1 for sgRNA sequence This paper N/A See Table S2 for oligos used in genotyping, RT-qPCR, and NGS This paper N/A Recombinant DNA Lenti-V2-Tnni3 (c.578G>A) This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-N ter This paper N/A AAV9-cTnT-SpRY HF1-ABE8e-C ter This paper N/A pLX-sgRNAs This paper N/A Cbh_v5 AAV-ABE N-terminal Addgene Cat#137177 Cbh_v5 AAV-ABE C-terminal Addgene Cat#137178 Software and algorithms GraphPad Prism 10 GraphPad http://www.graphpad.com/ HISAT2 v2.0.5 HISAT2 https://daehwankimlab.github.io/hisat2/ GSVA, v2.0.7 GSVA https://github.com/rcastelo/GSVA R (v4.4.2) R code http://www.r-project.org/ NRecon SkyScan Bruker microCT 2012-16, Version: 1.7.3.1 cTAn CT Analyzer Version: 1.17.7.2+ (64-bit) cTvol Realistic 3D-Visualization Version: 2.3.2.0 (64-bit) Cell Reports Medicine 7, 102639, March 17, 2026 e2 OPEN ACCESS Generation of Tnni3 R193H/R193H mice To evaluate the pathogenicity of the homozygous p.R192H variant in the TNNI3 gene, we generated a CRISPR/Cas9-mediated transgenic mouse model harboring the corresponding mutation p.R193H. .. The Tnni3 R193H knock-in model was created on a C57BL/6 J mouse strain (JAX #000664).

    other:

    Article Title: Hyaluronic acid oligosaccharides promote micro-vessel growth and regenerative ossification in biomimetic calvarial bone scaffolds.
    Article Snippet: Bone regeneration requires well-orchestrated cellular and molecular interactions, particularly vascularization and osteoprogenitor migration and differentiation.. Calvarial bone healing is featured by a temporal uncoupling of angiogenesis and osteogenesis: (i) osteoprogenitors derived from periosteum differentiate into osteoblasts at the injury site, followed by (ii) osteogenic cells invade into the vascularized lesion.. Promoting intra-defect microvessel growth may enhance osteogenic migration and accelerate ossification during calvarial bone repair.

    Article Title: Human hip osteoarthritis–associated Chadl variant induces intervertebral disc degeneration in mice
    Article Snippet: Chadl 8-bp, KO, and WT lumbar spines were dissected and fixed in 4% PFA in PBS at 4°C for 48 hours prior to μCT scans (Bruker, Skyscan 1275).



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