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cropseq multiv2 mtagbfp2 nls plasmid  (Addgene inc)


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    Structured Review

    Addgene inc cropseq multiv2 mtagbfp2 nls plasmid
    Cropseq Multiv2 Mtagbfp2 Nls Plasmid, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cropseq+vector/Flag-HA-USP22+(Plasmid+%2322575)/pm40993398-479-12-14
    Average 93 stars, based on 4 article reviews
    cropseq multiv2 mtagbfp2 nls plasmid - by Bioz Stars, 2026-10
    93/100 stars

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    Related Articles

    Cloning:

    Article Title: Systematic discovery of CRISPR-boosted CAR T cell immunotherapies.
    Article Snippet: Cloning the CROP-seq-CAR-multi screening vectors The CROP-seq-CAR-multi vectors were cloned from the CROPseq-multiv2-mTagBFP2-NLS plasmid (Addgene, 225754), which was amplified with primers CROPseq_FWD_016-minusACC and CROPseq-multi-v2_ REV1 (Supplementary Table 1i) using Q5 High-Fidelity 2X Master Mix (NEB, M0492L) to generate the backbone for all variants of the CROP-seq-CAR-multi vectors (7,622 bp, including 40-bp extensions), followed by DpnI digestion (NEB, R0176L) to remove the parental plasmid. .. Cloning the CROP-seq-CAR-multi screening vectors The CROP-seq-CAR-multi vectors were cloned from the CROPseq-multiv2-mTagBFP2-NLS plasmid (Addgene, 225754), which was amplified with primers CROPseq_FWD_016-minusACC and CROPseq-multi-v2_ REV1 (Supplementary Table 1i) using Q5 High-Fidelity 2X Master Mix (NEB, M0492L) to generate the backbone for all variants of the CROP-seq-CAR-multi vectors (7,622 bp, including 40-bp extensions), followed by DpnI digestion (NEB, R0176L) to remove the parental plasmid. .. PCR products were digested with PaqCI (NEB, R0745S), heat inactivated and cleaned with the Monarch PCR & DNA Cleanup Kit (NEB, T1030).

    Clone Assay:

    Article Title: Systematic discovery of CRISPR-boosted CAR T cell immunotherapies.
    Article Snippet: Cloning the CROP-seq-CAR-multi screening vectors The CROP-seq-CAR-multi vectors were cloned from the CROPseq-multiv2-mTagBFP2-NLS plasmid (Addgene, 225754), which was amplified with primers CROPseq_FWD_016-minusACC and CROPseq-multi-v2_ REV1 (Supplementary Table 1i) using Q5 High-Fidelity 2X Master Mix (NEB, M0492L) to generate the backbone for all variants of the CROP-seq-CAR-multi vectors (7,622 bp, including 40-bp extensions), followed by DpnI digestion (NEB, R0176L) to remove the parental plasmid. .. Cloning the CROP-seq-CAR-multi screening vectors The CROP-seq-CAR-multi vectors were cloned from the CROPseq-multiv2-mTagBFP2-NLS plasmid (Addgene, 225754), which was amplified with primers CROPseq_FWD_016-minusACC and CROPseq-multi-v2_ REV1 (Supplementary Table 1i) using Q5 High-Fidelity 2X Master Mix (NEB, M0492L) to generate the backbone for all variants of the CROP-seq-CAR-multi vectors (7,622 bp, including 40-bp extensions), followed by DpnI digestion (NEB, R0176L) to remove the parental plasmid. .. PCR products were digested with PaqCI (NEB, R0745S), heat inactivated and cleaned with the Monarch PCR & DNA Cleanup Kit (NEB, T1030).

    Article Title: Systematic discovery of CRISPR-boosted CAR T cell immunotherapies
    Article Snippet: The pPD0035_CROP-seq-CAR-Puro_CD19-28z (Addgene, 242983) vector was generated by replacing the sequence for the intracellular 4-1BB co-stimulatory domain with the sequence for the CD28 co-stimulatory domain ordered as a gBlock (IDT). .. The CROP-seq-CAR-multi vectors were cloned from the CROPseq-multi-v2-mTagBFP2-NLS plasmid (Addgene, 225754), which was amplified with primers CROPseq_FWD_016-minusACC and CROPseq-multi-v2_REV1 (Supplementary Table ) using Q5 High-Fidelity 2X Master Mix (NEB, M0492L) to generate the backbone for all variants of the CROP-seq-CAR-multi vectors (7,622 bp, including 40-bp extensions), followed by DpnI digestion (NEB, R0176L) to remove the parental plasmid. ..

    Plasmid Preparation:

    Article Title: Systematic discovery of CRISPR-boosted CAR T cell immunotherapies.
    Article Snippet: Cloning the CROP-seq-CAR-multi screening vectors The CROP-seq-CAR-multi vectors were cloned from the CROPseq-multiv2-mTagBFP2-NLS plasmid (Addgene, 225754), which was amplified with primers CROPseq_FWD_016-minusACC and CROPseq-multi-v2_ REV1 (Supplementary Table 1i) using Q5 High-Fidelity 2X Master Mix (NEB, M0492L) to generate the backbone for all variants of the CROP-seq-CAR-multi vectors (7,622 bp, including 40-bp extensions), followed by DpnI digestion (NEB, R0176L) to remove the parental plasmid. .. Cloning the CROP-seq-CAR-multi screening vectors The CROP-seq-CAR-multi vectors were cloned from the CROPseq-multiv2-mTagBFP2-NLS plasmid (Addgene, 225754), which was amplified with primers CROPseq_FWD_016-minusACC and CROPseq-multi-v2_ REV1 (Supplementary Table 1i) using Q5 High-Fidelity 2X Master Mix (NEB, M0492L) to generate the backbone for all variants of the CROP-seq-CAR-multi vectors (7,622 bp, including 40-bp extensions), followed by DpnI digestion (NEB, R0176L) to remove the parental plasmid. .. PCR products were digested with PaqCI (NEB, R0745S), heat inactivated and cleaned with the Monarch PCR & DNA Cleanup Kit (NEB, T1030).

    Article Title: Mutations in the 'Fingers' subdomain of the deubiquitinase USP1 modulate its function and activity.
    Article Snippet: .. A plasmid encoding Flag– HA–USP22 was provided by J. W. Harper (Harvard Medical School, Boston, MA, USA) through Addgene (#22575). ..

    Article Title: A chromatin-focused CRISPR screen identifies USP22 as a barrier to somatic cell reprogramming
    Article Snippet: .. To create USP22 g1 resistant cDNA, point silent mutation to destroy the NGG site was performed on Flag-HA-USP22 (Addgene plasmid, #22575). .. To achieve this Q5 site-directed mutagenesis kit was utilized by following manual (NEB, cat. # E0554S).

    Article Title: Systematic discovery of CRISPR-boosted CAR T cell immunotherapies
    Article Snippet: The pPD0035_CROP-seq-CAR-Puro_CD19-28z (Addgene, 242983) vector was generated by replacing the sequence for the intracellular 4-1BB co-stimulatory domain with the sequence for the CD28 co-stimulatory domain ordered as a gBlock (IDT). .. The CROP-seq-CAR-multi vectors were cloned from the CROPseq-multi-v2-mTagBFP2-NLS plasmid (Addgene, 225754), which was amplified with primers CROPseq_FWD_016-minusACC and CROPseq-multi-v2_REV1 (Supplementary Table ) using Q5 High-Fidelity 2X Master Mix (NEB, M0492L) to generate the backbone for all variants of the CROP-seq-CAR-multi vectors (7,622 bp, including 40-bp extensions), followed by DpnI digestion (NEB, R0176L) to remove the parental plasmid. ..

    Article Title: A chromatin-focused CRISPR screen identifies USP22 as a barrier to somatic cell reprogramming.
    Article Snippet: .. To create USP22 g1 resistant cDNA, point silent mutation to destroy the NGG site was performed on Flag-HA-USP22 (Addgene plasmid, #22575). .. To achieve this Q5 site-directed mutagenesis kit was utilized by following manual (NEB, cat. # E0554S).

    Amplification:

    Article Title: Systematic discovery of CRISPR-boosted CAR T cell immunotherapies.
    Article Snippet: Cloning the CROP-seq-CAR-multi screening vectors The CROP-seq-CAR-multi vectors were cloned from the CROPseq-multiv2-mTagBFP2-NLS plasmid (Addgene, 225754), which was amplified with primers CROPseq_FWD_016-minusACC and CROPseq-multi-v2_ REV1 (Supplementary Table 1i) using Q5 High-Fidelity 2X Master Mix (NEB, M0492L) to generate the backbone for all variants of the CROP-seq-CAR-multi vectors (7,622 bp, including 40-bp extensions), followed by DpnI digestion (NEB, R0176L) to remove the parental plasmid. .. Cloning the CROP-seq-CAR-multi screening vectors The CROP-seq-CAR-multi vectors were cloned from the CROPseq-multiv2-mTagBFP2-NLS plasmid (Addgene, 225754), which was amplified with primers CROPseq_FWD_016-minusACC and CROPseq-multi-v2_ REV1 (Supplementary Table 1i) using Q5 High-Fidelity 2X Master Mix (NEB, M0492L) to generate the backbone for all variants of the CROP-seq-CAR-multi vectors (7,622 bp, including 40-bp extensions), followed by DpnI digestion (NEB, R0176L) to remove the parental plasmid. .. PCR products were digested with PaqCI (NEB, R0745S), heat inactivated and cleaned with the Monarch PCR & DNA Cleanup Kit (NEB, T1030).

    Article Title: Systematic discovery of CRISPR-boosted CAR T cell immunotherapies
    Article Snippet: The pPD0035_CROP-seq-CAR-Puro_CD19-28z (Addgene, 242983) vector was generated by replacing the sequence for the intracellular 4-1BB co-stimulatory domain with the sequence for the CD28 co-stimulatory domain ordered as a gBlock (IDT). .. The CROP-seq-CAR-multi vectors were cloned from the CROPseq-multi-v2-mTagBFP2-NLS plasmid (Addgene, 225754), which was amplified with primers CROPseq_FWD_016-minusACC and CROPseq-multi-v2_REV1 (Supplementary Table ) using Q5 High-Fidelity 2X Master Mix (NEB, M0492L) to generate the backbone for all variants of the CROP-seq-CAR-multi vectors (7,622 bp, including 40-bp extensions), followed by DpnI digestion (NEB, R0176L) to remove the parental plasmid. ..

    Mutagenesis:

    Article Title: A chromatin-focused CRISPR screen identifies USP22 as a barrier to somatic cell reprogramming
    Article Snippet: .. To create USP22 g1 resistant cDNA, point silent mutation to destroy the NGG site was performed on Flag-HA-USP22 (Addgene plasmid, #22575). .. To achieve this Q5 site-directed mutagenesis kit was utilized by following manual (NEB, cat. # E0554S).

    Article Title: A chromatin-focused CRISPR screen identifies USP22 as a barrier to somatic cell reprogramming.
    Article Snippet: .. To create USP22 g1 resistant cDNA, point silent mutation to destroy the NGG site was performed on Flag-HA-USP22 (Addgene plasmid, #22575). .. To achieve this Q5 site-directed mutagenesis kit was utilized by following manual (NEB, cat. # E0554S).



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    Image Search Results


    a , Overview of gRNA assignment for CRISPRi screen. b , Coverage for each gRNA in CRISPRi screen. Data points represent means ± SEM. n = individual gRNAs from 1 SDR-seq experiment. c , Relative distance of gRNA binding site to transcription start site (TSS). Positive values are after TSS (within transcript), negative values before transcript. Size indicates P -value calculated using MAST with Benjamini-Hochberg correction for multiple testing. Significant hits ( P -value < 0.05) are colored. d , Outline of testing for PE iPSCs. Editing can be measured by repairing a non-functional EGFP that was integrated via a lentivirus. e , Flow cytometry indicating editing in PE iPSCs.

    Journal: Nature Methods

    Article Title: Functional phenotyping of genomic variants using joint multiomic single-cell DNA–RNA sequencing

    doi: 10.1038/s41592-025-02805-0

    Figure Lengend Snippet: a , Overview of gRNA assignment for CRISPRi screen. b , Coverage for each gRNA in CRISPRi screen. Data points represent means ± SEM. n = individual gRNAs from 1 SDR-seq experiment. c , Relative distance of gRNA binding site to transcription start site (TSS). Positive values are after TSS (within transcript), negative values before transcript. Size indicates P -value calculated using MAST with Benjamini-Hochberg correction for multiple testing. Significant hits ( P -value < 0.05) are colored. d , Outline of testing for PE iPSCs. Editing can be measured by repairing a non-functional EGFP that was integrated via a lentivirus. e , Flow cytometry indicating editing in PE iPSCs.

    Article Snippet: The gRNA screening vector was a modified CROP-seq vector (Addgene, 86708) to also express eGFP and include a distinct gRNA CS in the scaffold of the gRNA .

    Techniques: Binding Assay, Functional Assay, Flow Cytometry