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control vector pcdna 3 1  (ATCC)


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    Structured Review

    ATCC control vector pcdna 3 1
    Control Vector Pcdna 3 1, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 35160 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/controller+22/MCF7/pmc12739129-289-16-7
    Average 99 stars, based on 35160 article reviews
    control vector pcdna 3 1 - by Bioz Stars, 2026-10
    99/100 stars

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    Related Articles

    Multiple Displacement Amplification:

    Article Title: IL-1β/IL-6 inflammatory crosstalk drives DNA methylation and histone remodeling associated with cytokine induced senescence in luminal breast cancer
    Article Snippet: .. MCF-7 (CVCL_0031), MDA-MB-231 (CVCL_0062) and MCF-10 A (CVCL_0598) cell lines were procured from ATCC and cultured according to supplier’s protocol. ..

    Article Title: LINC01537 Regulates Malignant Phenotypes and Predicts Prognosis in Breast Cancer, and Its Bioinformatics Analysis
    Article Snippet: .. The normal human mammary epithelial cell line MCF10A and breast cancer cell lines MDA‐MB‐453, MDA‐MB‐231, BT549, MCF‐7, and SK‐BR‐3 were obtained from the American Type Culture Collection (ATCC). .. MCF‐7 and MDA‐MB‐231 cells were grown in RPMI‐1640, while MCF10A, BT549, and MDA‐MB‐453 were maintained in DMEM (Invitrogen).

    Cell Culture:

    Article Title: IL-1β/IL-6 inflammatory crosstalk drives DNA methylation and histone remodeling associated with cytokine induced senescence in luminal breast cancer
    Article Snippet: .. MCF-7 (CVCL_0031), MDA-MB-231 (CVCL_0062) and MCF-10 A (CVCL_0598) cell lines were procured from ATCC and cultured according to supplier’s protocol. ..

    Article Title: Design and synthesis of hydrolyzable coumarin–naphthalimide dual probes for NIR fluorescence detection and selective photodynamic activity in cancer cells
    Article Snippet: .. Human embryonic kidney cells HEK-293 (ATCC CRL-1573), used as a healthy model, and MCF-7 adenocarcinoma breast cancer cells (ATCC HTB-22) were cultured in Dulbecco's Modified Eagle's Medium (DMEM) supplemented with 10% fetal bovine serum (FBS), 100 U mL −1 penicillin, and 100 μg mL −1 streptomycin at 37 °C, 5% CO 2 , and 100% humidity. ..

    Modification:

    Article Title: Design and synthesis of hydrolyzable coumarin–naphthalimide dual probes for NIR fluorescence detection and selective photodynamic activity in cancer cells
    Article Snippet: .. Human embryonic kidney cells HEK-293 (ATCC CRL-1573), used as a healthy model, and MCF-7 adenocarcinoma breast cancer cells (ATCC HTB-22) were cultured in Dulbecco's Modified Eagle's Medium (DMEM) supplemented with 10% fetal bovine serum (FBS), 100 U mL −1 penicillin, and 100 μg mL −1 streptomycin at 37 °C, 5% CO 2 , and 100% humidity. ..

    Flow Cytometry:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-FANCD2 (Clone EPR2302) Abcam Cat# ab108928, RRID: AB_10862535 Mouse monoclonal anti-phospho-Histone H3 Ser10 (Clone 6G3) Cell Signaling Technology Cat# 9706, RRID: AB_331748 Mouse monoclonal anti-Cyclin A2 (Clone 1C6C11) Proteintech Cat# 66391-1-Ig, RRID: AB_2881767 Rabbit polyclonal anti-53BP1 Cell Signaling Technology Cat# 4937, RRID: AB_10694558 Rat monoclonal anti-RPA32/RPA2 (Clone 4E4) Cell Signaling Technology Cat# 2208, RRID: AB_2238543 Mouse monoclonal anti-γH2AX Ser139 (Clone JBW301) Sigma-Aldrich (EMD Millipore) Cat# 05–636, RRID: AB_309864 Mouse monoclonal anti-DNA Polymerase iota (POLI, Clone OTI1H9) Abcam Cat# ab157244 Mouse monoclonal BV421-conjugated antiCD24 (Clone ML5) BD Biosciences Cat# 562789, RRID: AB_2737796 Mouse monoclonal Alexa Fluor 647-conjugated ani-EpCAM (Clone VU1D9) Cell Signaling Technology Cat# 5447, RRID: AB_10693458 Rabbit monoclonal anti-BRCA2 (Clone D9S6V) Cell Signaling Technology Cat# 10741, RRID: AB_2797730 Rabbit monoclonal anti-RAD52 (Clone EPR3464(2)) Abcam Cat# ab124971, RRID: AB_10971685 Mouse monoclonal anti-β-Actin (Clone 8H10D10) Cell Signaling Technology Cat# 3700, RRID: AB_2242334 Rabbit monoclonal anti-Vinculin (Clone E1E9V) Cell Signaling Technology Cat# 13901, RRID: AB_2728768 Mouse monoclonal anti-BrdU (Clone B44) BD Biosciences Cat# 347580, RRID: AB_400326 Rat monoclonal anti-BrdU (Clone BU1/75 (ICR1)) Abcam Cat# ab6326, RRID: AB_305426 Biological samples Human breast tissues from prophylactic mastectomies of BRCA2 mutation carriers Tissue Procurement Core, Cleveland Clinic N/A Chemicals, peptides, and recombinant proteins Aphidicolin Sigma-Aldrich Cat# 5047440001 Colcemid Gibco Cat# 15210 Potassium chloride Sigma Cat# P9327 Giemsa Sigma-Aldrich Cat# 32884 Cytochalasin-B Sigma Cat# C2743 CIdU (5-Chloro-2′-deoxyuridine) Sigma-Aldrich Cat# C6891 IdU (5-Iodo-2′-deoxyuridine) Sigma-Aldrich Cat# I7125 Lipofectamine RNAiMAX ThermoFisher Scientific Cat# 13778075 DAPI Invitrogen Cat# P36962 DMEM/F12 media ThermoFisher Scientific Cat# 11330057 Horse Serum ThermoFisher Scientific Cat# 16050122 Insulin Sigma Cat# I-1882 EGF Peprotech Cat# AF-100–15 Hydrocortisone Sigma Cat# H6909 (Continued on next page) 12 iScience 29, 117830, November 20, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Cholera toxin Sigma Aldrich Cat# C8052 Mammary Epithelial Cell Basal Medium ATCC Cat# PCS-600–030, Mammary Epithelial Cell Growth Kit ATCC Cat# PCS-600–040 DMEM/F-12 GlutaMAX ThermoFisher Scientific Cat# 10565018 L-glutamine ThermoFisher Scientific Cat# 25030081 Gentamycin/amphotericin-B ThermoFisher Scientific Cat# R01510 Critical commercial assays Click-iT EdU Alexa Fluor 488 flow cytometry assay kit Invitrogen Cat# C10425 Click-iT EdU Alexa Fluor 488 Imaging kit Invitrogen Cat# C10637 FxCycle Violet Ready Flow Reagent Invitrogen Cat# R37166 Live-or-Dye 510/551 Biotium Cat # 32012A MycoAlert Mycoplasma Detection Kit Lonza Cat# LT07–218 PierceTM Rapid Gold BCA Protein Assay Kit Thermo Scientific, Cat# A53225 RIPA buffer Cell Signaling Technology Cat# 9803/9806 Protease and phosphatase inhibitors Cell Signaling Technology Cat# 5872 PMSF Cell Signaling Technology Cat# 8553 SDS-PAGE Precast Protein Gels Bio-Rad Cat# 4561084 Clarity Max Western ECL Substrate Bio-Rad Cat# 1705062 Experimental models: Cell lines Human mammary epithelial cell line: MCF10A Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRL-10317 Primary Human Mammary Epithelial Cells: HMECs American Type Culture Collection (ATCC) Cat# ATCC, PCS-600–010 Primary BRCA2-mutant Human Mammary Epithelial Cells: BRCA2mut/- HMECs Tissue Procurement Core, Cleveland Clinic Caputo et al.55 Human mammary cancer cell line: MCF7 Cleveland Clinic Research, cell and media production core facility Cat# ATCC, HTB-22 Human cervical cancer cell line: HeLa Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRM-CCL-2 Oligonucleotides siRNA sequences Dharmacon Horizon Discovery Supplementary file, this paper Software and algorithms R (version 4.5.3) R Software https://www.r-project.org/ Seurat (version 5.4.0) Hao, Y. et al., Dictionary learning for integrative, multimodal and scalable singlecell analysis. ..

    Imaging:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-FANCD2 (Clone EPR2302) Abcam Cat# ab108928, RRID: AB_10862535 Mouse monoclonal anti-phospho-Histone H3 Ser10 (Clone 6G3) Cell Signaling Technology Cat# 9706, RRID: AB_331748 Mouse monoclonal anti-Cyclin A2 (Clone 1C6C11) Proteintech Cat# 66391-1-Ig, RRID: AB_2881767 Rabbit polyclonal anti-53BP1 Cell Signaling Technology Cat# 4937, RRID: AB_10694558 Rat monoclonal anti-RPA32/RPA2 (Clone 4E4) Cell Signaling Technology Cat# 2208, RRID: AB_2238543 Mouse monoclonal anti-γH2AX Ser139 (Clone JBW301) Sigma-Aldrich (EMD Millipore) Cat# 05–636, RRID: AB_309864 Mouse monoclonal anti-DNA Polymerase iota (POLI, Clone OTI1H9) Abcam Cat# ab157244 Mouse monoclonal BV421-conjugated antiCD24 (Clone ML5) BD Biosciences Cat# 562789, RRID: AB_2737796 Mouse monoclonal Alexa Fluor 647-conjugated ani-EpCAM (Clone VU1D9) Cell Signaling Technology Cat# 5447, RRID: AB_10693458 Rabbit monoclonal anti-BRCA2 (Clone D9S6V) Cell Signaling Technology Cat# 10741, RRID: AB_2797730 Rabbit monoclonal anti-RAD52 (Clone EPR3464(2)) Abcam Cat# ab124971, RRID: AB_10971685 Mouse monoclonal anti-β-Actin (Clone 8H10D10) Cell Signaling Technology Cat# 3700, RRID: AB_2242334 Rabbit monoclonal anti-Vinculin (Clone E1E9V) Cell Signaling Technology Cat# 13901, RRID: AB_2728768 Mouse monoclonal anti-BrdU (Clone B44) BD Biosciences Cat# 347580, RRID: AB_400326 Rat monoclonal anti-BrdU (Clone BU1/75 (ICR1)) Abcam Cat# ab6326, RRID: AB_305426 Biological samples Human breast tissues from prophylactic mastectomies of BRCA2 mutation carriers Tissue Procurement Core, Cleveland Clinic N/A Chemicals, peptides, and recombinant proteins Aphidicolin Sigma-Aldrich Cat# 5047440001 Colcemid Gibco Cat# 15210 Potassium chloride Sigma Cat# P9327 Giemsa Sigma-Aldrich Cat# 32884 Cytochalasin-B Sigma Cat# C2743 CIdU (5-Chloro-2′-deoxyuridine) Sigma-Aldrich Cat# C6891 IdU (5-Iodo-2′-deoxyuridine) Sigma-Aldrich Cat# I7125 Lipofectamine RNAiMAX ThermoFisher Scientific Cat# 13778075 DAPI Invitrogen Cat# P36962 DMEM/F12 media ThermoFisher Scientific Cat# 11330057 Horse Serum ThermoFisher Scientific Cat# 16050122 Insulin Sigma Cat# I-1882 EGF Peprotech Cat# AF-100–15 Hydrocortisone Sigma Cat# H6909 (Continued on next page) 12 iScience 29, 117830, November 20, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Cholera toxin Sigma Aldrich Cat# C8052 Mammary Epithelial Cell Basal Medium ATCC Cat# PCS-600–030, Mammary Epithelial Cell Growth Kit ATCC Cat# PCS-600–040 DMEM/F-12 GlutaMAX ThermoFisher Scientific Cat# 10565018 L-glutamine ThermoFisher Scientific Cat# 25030081 Gentamycin/amphotericin-B ThermoFisher Scientific Cat# R01510 Critical commercial assays Click-iT EdU Alexa Fluor 488 flow cytometry assay kit Invitrogen Cat# C10425 Click-iT EdU Alexa Fluor 488 Imaging kit Invitrogen Cat# C10637 FxCycle Violet Ready Flow Reagent Invitrogen Cat# R37166 Live-or-Dye 510/551 Biotium Cat # 32012A MycoAlert Mycoplasma Detection Kit Lonza Cat# LT07–218 PierceTM Rapid Gold BCA Protein Assay Kit Thermo Scientific, Cat# A53225 RIPA buffer Cell Signaling Technology Cat# 9803/9806 Protease and phosphatase inhibitors Cell Signaling Technology Cat# 5872 PMSF Cell Signaling Technology Cat# 8553 SDS-PAGE Precast Protein Gels Bio-Rad Cat# 4561084 Clarity Max Western ECL Substrate Bio-Rad Cat# 1705062 Experimental models: Cell lines Human mammary epithelial cell line: MCF10A Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRL-10317 Primary Human Mammary Epithelial Cells: HMECs American Type Culture Collection (ATCC) Cat# ATCC, PCS-600–010 Primary BRCA2-mutant Human Mammary Epithelial Cells: BRCA2mut/- HMECs Tissue Procurement Core, Cleveland Clinic Caputo et al.55 Human mammary cancer cell line: MCF7 Cleveland Clinic Research, cell and media production core facility Cat# ATCC, HTB-22 Human cervical cancer cell line: HeLa Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRM-CCL-2 Oligonucleotides siRNA sequences Dharmacon Horizon Discovery Supplementary file, this paper Software and algorithms R (version 4.5.3) R Software https://www.r-project.org/ Seurat (version 5.4.0) Hao, Y. et al., Dictionary learning for integrative, multimodal and scalable singlecell analysis. ..

    BIA-KA:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-FANCD2 (Clone EPR2302) Abcam Cat# ab108928, RRID: AB_10862535 Mouse monoclonal anti-phospho-Histone H3 Ser10 (Clone 6G3) Cell Signaling Technology Cat# 9706, RRID: AB_331748 Mouse monoclonal anti-Cyclin A2 (Clone 1C6C11) Proteintech Cat# 66391-1-Ig, RRID: AB_2881767 Rabbit polyclonal anti-53BP1 Cell Signaling Technology Cat# 4937, RRID: AB_10694558 Rat monoclonal anti-RPA32/RPA2 (Clone 4E4) Cell Signaling Technology Cat# 2208, RRID: AB_2238543 Mouse monoclonal anti-γH2AX Ser139 (Clone JBW301) Sigma-Aldrich (EMD Millipore) Cat# 05–636, RRID: AB_309864 Mouse monoclonal anti-DNA Polymerase iota (POLI, Clone OTI1H9) Abcam Cat# ab157244 Mouse monoclonal BV421-conjugated antiCD24 (Clone ML5) BD Biosciences Cat# 562789, RRID: AB_2737796 Mouse monoclonal Alexa Fluor 647-conjugated ani-EpCAM (Clone VU1D9) Cell Signaling Technology Cat# 5447, RRID: AB_10693458 Rabbit monoclonal anti-BRCA2 (Clone D9S6V) Cell Signaling Technology Cat# 10741, RRID: AB_2797730 Rabbit monoclonal anti-RAD52 (Clone EPR3464(2)) Abcam Cat# ab124971, RRID: AB_10971685 Mouse monoclonal anti-β-Actin (Clone 8H10D10) Cell Signaling Technology Cat# 3700, RRID: AB_2242334 Rabbit monoclonal anti-Vinculin (Clone E1E9V) Cell Signaling Technology Cat# 13901, RRID: AB_2728768 Mouse monoclonal anti-BrdU (Clone B44) BD Biosciences Cat# 347580, RRID: AB_400326 Rat monoclonal anti-BrdU (Clone BU1/75 (ICR1)) Abcam Cat# ab6326, RRID: AB_305426 Biological samples Human breast tissues from prophylactic mastectomies of BRCA2 mutation carriers Tissue Procurement Core, Cleveland Clinic N/A Chemicals, peptides, and recombinant proteins Aphidicolin Sigma-Aldrich Cat# 5047440001 Colcemid Gibco Cat# 15210 Potassium chloride Sigma Cat# P9327 Giemsa Sigma-Aldrich Cat# 32884 Cytochalasin-B Sigma Cat# C2743 CIdU (5-Chloro-2′-deoxyuridine) Sigma-Aldrich Cat# C6891 IdU (5-Iodo-2′-deoxyuridine) Sigma-Aldrich Cat# I7125 Lipofectamine RNAiMAX ThermoFisher Scientific Cat# 13778075 DAPI Invitrogen Cat# P36962 DMEM/F12 media ThermoFisher Scientific Cat# 11330057 Horse Serum ThermoFisher Scientific Cat# 16050122 Insulin Sigma Cat# I-1882 EGF Peprotech Cat# AF-100–15 Hydrocortisone Sigma Cat# H6909 (Continued on next page) 12 iScience 29, 117830, November 20, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Cholera toxin Sigma Aldrich Cat# C8052 Mammary Epithelial Cell Basal Medium ATCC Cat# PCS-600–030, Mammary Epithelial Cell Growth Kit ATCC Cat# PCS-600–040 DMEM/F-12 GlutaMAX ThermoFisher Scientific Cat# 10565018 L-glutamine ThermoFisher Scientific Cat# 25030081 Gentamycin/amphotericin-B ThermoFisher Scientific Cat# R01510 Critical commercial assays Click-iT EdU Alexa Fluor 488 flow cytometry assay kit Invitrogen Cat# C10425 Click-iT EdU Alexa Fluor 488 Imaging kit Invitrogen Cat# C10637 FxCycle Violet Ready Flow Reagent Invitrogen Cat# R37166 Live-or-Dye 510/551 Biotium Cat # 32012A MycoAlert Mycoplasma Detection Kit Lonza Cat# LT07–218 PierceTM Rapid Gold BCA Protein Assay Kit Thermo Scientific, Cat# A53225 RIPA buffer Cell Signaling Technology Cat# 9803/9806 Protease and phosphatase inhibitors Cell Signaling Technology Cat# 5872 PMSF Cell Signaling Technology Cat# 8553 SDS-PAGE Precast Protein Gels Bio-Rad Cat# 4561084 Clarity Max Western ECL Substrate Bio-Rad Cat# 1705062 Experimental models: Cell lines Human mammary epithelial cell line: MCF10A Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRL-10317 Primary Human Mammary Epithelial Cells: HMECs American Type Culture Collection (ATCC) Cat# ATCC, PCS-600–010 Primary BRCA2-mutant Human Mammary Epithelial Cells: BRCA2mut/- HMECs Tissue Procurement Core, Cleveland Clinic Caputo et al.55 Human mammary cancer cell line: MCF7 Cleveland Clinic Research, cell and media production core facility Cat# ATCC, HTB-22 Human cervical cancer cell line: HeLa Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRM-CCL-2 Oligonucleotides siRNA sequences Dharmacon Horizon Discovery Supplementary file, this paper Software and algorithms R (version 4.5.3) R Software https://www.r-project.org/ Seurat (version 5.4.0) Hao, Y. et al., Dictionary learning for integrative, multimodal and scalable singlecell analysis. ..

    Cell-Signaling:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-FANCD2 (Clone EPR2302) Abcam Cat# ab108928, RRID: AB_10862535 Mouse monoclonal anti-phospho-Histone H3 Ser10 (Clone 6G3) Cell Signaling Technology Cat# 9706, RRID: AB_331748 Mouse monoclonal anti-Cyclin A2 (Clone 1C6C11) Proteintech Cat# 66391-1-Ig, RRID: AB_2881767 Rabbit polyclonal anti-53BP1 Cell Signaling Technology Cat# 4937, RRID: AB_10694558 Rat monoclonal anti-RPA32/RPA2 (Clone 4E4) Cell Signaling Technology Cat# 2208, RRID: AB_2238543 Mouse monoclonal anti-γH2AX Ser139 (Clone JBW301) Sigma-Aldrich (EMD Millipore) Cat# 05–636, RRID: AB_309864 Mouse monoclonal anti-DNA Polymerase iota (POLI, Clone OTI1H9) Abcam Cat# ab157244 Mouse monoclonal BV421-conjugated antiCD24 (Clone ML5) BD Biosciences Cat# 562789, RRID: AB_2737796 Mouse monoclonal Alexa Fluor 647-conjugated ani-EpCAM (Clone VU1D9) Cell Signaling Technology Cat# 5447, RRID: AB_10693458 Rabbit monoclonal anti-BRCA2 (Clone D9S6V) Cell Signaling Technology Cat# 10741, RRID: AB_2797730 Rabbit monoclonal anti-RAD52 (Clone EPR3464(2)) Abcam Cat# ab124971, RRID: AB_10971685 Mouse monoclonal anti-β-Actin (Clone 8H10D10) Cell Signaling Technology Cat# 3700, RRID: AB_2242334 Rabbit monoclonal anti-Vinculin (Clone E1E9V) Cell Signaling Technology Cat# 13901, RRID: AB_2728768 Mouse monoclonal anti-BrdU (Clone B44) BD Biosciences Cat# 347580, RRID: AB_400326 Rat monoclonal anti-BrdU (Clone BU1/75 (ICR1)) Abcam Cat# ab6326, RRID: AB_305426 Biological samples Human breast tissues from prophylactic mastectomies of BRCA2 mutation carriers Tissue Procurement Core, Cleveland Clinic N/A Chemicals, peptides, and recombinant proteins Aphidicolin Sigma-Aldrich Cat# 5047440001 Colcemid Gibco Cat# 15210 Potassium chloride Sigma Cat# P9327 Giemsa Sigma-Aldrich Cat# 32884 Cytochalasin-B Sigma Cat# C2743 CIdU (5-Chloro-2′-deoxyuridine) Sigma-Aldrich Cat# C6891 IdU (5-Iodo-2′-deoxyuridine) Sigma-Aldrich Cat# I7125 Lipofectamine RNAiMAX ThermoFisher Scientific Cat# 13778075 DAPI Invitrogen Cat# P36962 DMEM/F12 media ThermoFisher Scientific Cat# 11330057 Horse Serum ThermoFisher Scientific Cat# 16050122 Insulin Sigma Cat# I-1882 EGF Peprotech Cat# AF-100–15 Hydrocortisone Sigma Cat# H6909 (Continued on next page) 12 iScience 29, 117830, November 20, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Cholera toxin Sigma Aldrich Cat# C8052 Mammary Epithelial Cell Basal Medium ATCC Cat# PCS-600–030, Mammary Epithelial Cell Growth Kit ATCC Cat# PCS-600–040 DMEM/F-12 GlutaMAX ThermoFisher Scientific Cat# 10565018 L-glutamine ThermoFisher Scientific Cat# 25030081 Gentamycin/amphotericin-B ThermoFisher Scientific Cat# R01510 Critical commercial assays Click-iT EdU Alexa Fluor 488 flow cytometry assay kit Invitrogen Cat# C10425 Click-iT EdU Alexa Fluor 488 Imaging kit Invitrogen Cat# C10637 FxCycle Violet Ready Flow Reagent Invitrogen Cat# R37166 Live-or-Dye 510/551 Biotium Cat # 32012A MycoAlert Mycoplasma Detection Kit Lonza Cat# LT07–218 PierceTM Rapid Gold BCA Protein Assay Kit Thermo Scientific, Cat# A53225 RIPA buffer Cell Signaling Technology Cat# 9803/9806 Protease and phosphatase inhibitors Cell Signaling Technology Cat# 5872 PMSF Cell Signaling Technology Cat# 8553 SDS-PAGE Precast Protein Gels Bio-Rad Cat# 4561084 Clarity Max Western ECL Substrate Bio-Rad Cat# 1705062 Experimental models: Cell lines Human mammary epithelial cell line: MCF10A Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRL-10317 Primary Human Mammary Epithelial Cells: HMECs American Type Culture Collection (ATCC) Cat# ATCC, PCS-600–010 Primary BRCA2-mutant Human Mammary Epithelial Cells: BRCA2mut/- HMECs Tissue Procurement Core, Cleveland Clinic Caputo et al.55 Human mammary cancer cell line: MCF7 Cleveland Clinic Research, cell and media production core facility Cat# ATCC, HTB-22 Human cervical cancer cell line: HeLa Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRM-CCL-2 Oligonucleotides siRNA sequences Dharmacon Horizon Discovery Supplementary file, this paper Software and algorithms R (version 4.5.3) R Software https://www.r-project.org/ Seurat (version 5.4.0) Hao, Y. et al., Dictionary learning for integrative, multimodal and scalable singlecell analysis. ..

    SDS Page:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-FANCD2 (Clone EPR2302) Abcam Cat# ab108928, RRID: AB_10862535 Mouse monoclonal anti-phospho-Histone H3 Ser10 (Clone 6G3) Cell Signaling Technology Cat# 9706, RRID: AB_331748 Mouse monoclonal anti-Cyclin A2 (Clone 1C6C11) Proteintech Cat# 66391-1-Ig, RRID: AB_2881767 Rabbit polyclonal anti-53BP1 Cell Signaling Technology Cat# 4937, RRID: AB_10694558 Rat monoclonal anti-RPA32/RPA2 (Clone 4E4) Cell Signaling Technology Cat# 2208, RRID: AB_2238543 Mouse monoclonal anti-γH2AX Ser139 (Clone JBW301) Sigma-Aldrich (EMD Millipore) Cat# 05–636, RRID: AB_309864 Mouse monoclonal anti-DNA Polymerase iota (POLI, Clone OTI1H9) Abcam Cat# ab157244 Mouse monoclonal BV421-conjugated antiCD24 (Clone ML5) BD Biosciences Cat# 562789, RRID: AB_2737796 Mouse monoclonal Alexa Fluor 647-conjugated ani-EpCAM (Clone VU1D9) Cell Signaling Technology Cat# 5447, RRID: AB_10693458 Rabbit monoclonal anti-BRCA2 (Clone D9S6V) Cell Signaling Technology Cat# 10741, RRID: AB_2797730 Rabbit monoclonal anti-RAD52 (Clone EPR3464(2)) Abcam Cat# ab124971, RRID: AB_10971685 Mouse monoclonal anti-β-Actin (Clone 8H10D10) Cell Signaling Technology Cat# 3700, RRID: AB_2242334 Rabbit monoclonal anti-Vinculin (Clone E1E9V) Cell Signaling Technology Cat# 13901, RRID: AB_2728768 Mouse monoclonal anti-BrdU (Clone B44) BD Biosciences Cat# 347580, RRID: AB_400326 Rat monoclonal anti-BrdU (Clone BU1/75 (ICR1)) Abcam Cat# ab6326, RRID: AB_305426 Biological samples Human breast tissues from prophylactic mastectomies of BRCA2 mutation carriers Tissue Procurement Core, Cleveland Clinic N/A Chemicals, peptides, and recombinant proteins Aphidicolin Sigma-Aldrich Cat# 5047440001 Colcemid Gibco Cat# 15210 Potassium chloride Sigma Cat# P9327 Giemsa Sigma-Aldrich Cat# 32884 Cytochalasin-B Sigma Cat# C2743 CIdU (5-Chloro-2′-deoxyuridine) Sigma-Aldrich Cat# C6891 IdU (5-Iodo-2′-deoxyuridine) Sigma-Aldrich Cat# I7125 Lipofectamine RNAiMAX ThermoFisher Scientific Cat# 13778075 DAPI Invitrogen Cat# P36962 DMEM/F12 media ThermoFisher Scientific Cat# 11330057 Horse Serum ThermoFisher Scientific Cat# 16050122 Insulin Sigma Cat# I-1882 EGF Peprotech Cat# AF-100–15 Hydrocortisone Sigma Cat# H6909 (Continued on next page) 12 iScience 29, 117830, November 20, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Cholera toxin Sigma Aldrich Cat# C8052 Mammary Epithelial Cell Basal Medium ATCC Cat# PCS-600–030, Mammary Epithelial Cell Growth Kit ATCC Cat# PCS-600–040 DMEM/F-12 GlutaMAX ThermoFisher Scientific Cat# 10565018 L-glutamine ThermoFisher Scientific Cat# 25030081 Gentamycin/amphotericin-B ThermoFisher Scientific Cat# R01510 Critical commercial assays Click-iT EdU Alexa Fluor 488 flow cytometry assay kit Invitrogen Cat# C10425 Click-iT EdU Alexa Fluor 488 Imaging kit Invitrogen Cat# C10637 FxCycle Violet Ready Flow Reagent Invitrogen Cat# R37166 Live-or-Dye 510/551 Biotium Cat # 32012A MycoAlert Mycoplasma Detection Kit Lonza Cat# LT07–218 PierceTM Rapid Gold BCA Protein Assay Kit Thermo Scientific, Cat# A53225 RIPA buffer Cell Signaling Technology Cat# 9803/9806 Protease and phosphatase inhibitors Cell Signaling Technology Cat# 5872 PMSF Cell Signaling Technology Cat# 8553 SDS-PAGE Precast Protein Gels Bio-Rad Cat# 4561084 Clarity Max Western ECL Substrate Bio-Rad Cat# 1705062 Experimental models: Cell lines Human mammary epithelial cell line: MCF10A Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRL-10317 Primary Human Mammary Epithelial Cells: HMECs American Type Culture Collection (ATCC) Cat# ATCC, PCS-600–010 Primary BRCA2-mutant Human Mammary Epithelial Cells: BRCA2mut/- HMECs Tissue Procurement Core, Cleveland Clinic Caputo et al.55 Human mammary cancer cell line: MCF7 Cleveland Clinic Research, cell and media production core facility Cat# ATCC, HTB-22 Human cervical cancer cell line: HeLa Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRM-CCL-2 Oligonucleotides siRNA sequences Dharmacon Horizon Discovery Supplementary file, this paper Software and algorithms R (version 4.5.3) R Software https://www.r-project.org/ Seurat (version 5.4.0) Hao, Y. et al., Dictionary learning for integrative, multimodal and scalable singlecell analysis. ..

    Western Blot:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-FANCD2 (Clone EPR2302) Abcam Cat# ab108928, RRID: AB_10862535 Mouse monoclonal anti-phospho-Histone H3 Ser10 (Clone 6G3) Cell Signaling Technology Cat# 9706, RRID: AB_331748 Mouse monoclonal anti-Cyclin A2 (Clone 1C6C11) Proteintech Cat# 66391-1-Ig, RRID: AB_2881767 Rabbit polyclonal anti-53BP1 Cell Signaling Technology Cat# 4937, RRID: AB_10694558 Rat monoclonal anti-RPA32/RPA2 (Clone 4E4) Cell Signaling Technology Cat# 2208, RRID: AB_2238543 Mouse monoclonal anti-γH2AX Ser139 (Clone JBW301) Sigma-Aldrich (EMD Millipore) Cat# 05–636, RRID: AB_309864 Mouse monoclonal anti-DNA Polymerase iota (POLI, Clone OTI1H9) Abcam Cat# ab157244 Mouse monoclonal BV421-conjugated antiCD24 (Clone ML5) BD Biosciences Cat# 562789, RRID: AB_2737796 Mouse monoclonal Alexa Fluor 647-conjugated ani-EpCAM (Clone VU1D9) Cell Signaling Technology Cat# 5447, RRID: AB_10693458 Rabbit monoclonal anti-BRCA2 (Clone D9S6V) Cell Signaling Technology Cat# 10741, RRID: AB_2797730 Rabbit monoclonal anti-RAD52 (Clone EPR3464(2)) Abcam Cat# ab124971, RRID: AB_10971685 Mouse monoclonal anti-β-Actin (Clone 8H10D10) Cell Signaling Technology Cat# 3700, RRID: AB_2242334 Rabbit monoclonal anti-Vinculin (Clone E1E9V) Cell Signaling Technology Cat# 13901, RRID: AB_2728768 Mouse monoclonal anti-BrdU (Clone B44) BD Biosciences Cat# 347580, RRID: AB_400326 Rat monoclonal anti-BrdU (Clone BU1/75 (ICR1)) Abcam Cat# ab6326, RRID: AB_305426 Biological samples Human breast tissues from prophylactic mastectomies of BRCA2 mutation carriers Tissue Procurement Core, Cleveland Clinic N/A Chemicals, peptides, and recombinant proteins Aphidicolin Sigma-Aldrich Cat# 5047440001 Colcemid Gibco Cat# 15210 Potassium chloride Sigma Cat# P9327 Giemsa Sigma-Aldrich Cat# 32884 Cytochalasin-B Sigma Cat# C2743 CIdU (5-Chloro-2′-deoxyuridine) Sigma-Aldrich Cat# C6891 IdU (5-Iodo-2′-deoxyuridine) Sigma-Aldrich Cat# I7125 Lipofectamine RNAiMAX ThermoFisher Scientific Cat# 13778075 DAPI Invitrogen Cat# P36962 DMEM/F12 media ThermoFisher Scientific Cat# 11330057 Horse Serum ThermoFisher Scientific Cat# 16050122 Insulin Sigma Cat# I-1882 EGF Peprotech Cat# AF-100–15 Hydrocortisone Sigma Cat# H6909 (Continued on next page) 12 iScience 29, 117830, November 20, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Cholera toxin Sigma Aldrich Cat# C8052 Mammary Epithelial Cell Basal Medium ATCC Cat# PCS-600–030, Mammary Epithelial Cell Growth Kit ATCC Cat# PCS-600–040 DMEM/F-12 GlutaMAX ThermoFisher Scientific Cat# 10565018 L-glutamine ThermoFisher Scientific Cat# 25030081 Gentamycin/amphotericin-B ThermoFisher Scientific Cat# R01510 Critical commercial assays Click-iT EdU Alexa Fluor 488 flow cytometry assay kit Invitrogen Cat# C10425 Click-iT EdU Alexa Fluor 488 Imaging kit Invitrogen Cat# C10637 FxCycle Violet Ready Flow Reagent Invitrogen Cat# R37166 Live-or-Dye 510/551 Biotium Cat # 32012A MycoAlert Mycoplasma Detection Kit Lonza Cat# LT07–218 PierceTM Rapid Gold BCA Protein Assay Kit Thermo Scientific, Cat# A53225 RIPA buffer Cell Signaling Technology Cat# 9803/9806 Protease and phosphatase inhibitors Cell Signaling Technology Cat# 5872 PMSF Cell Signaling Technology Cat# 8553 SDS-PAGE Precast Protein Gels Bio-Rad Cat# 4561084 Clarity Max Western ECL Substrate Bio-Rad Cat# 1705062 Experimental models: Cell lines Human mammary epithelial cell line: MCF10A Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRL-10317 Primary Human Mammary Epithelial Cells: HMECs American Type Culture Collection (ATCC) Cat# ATCC, PCS-600–010 Primary BRCA2-mutant Human Mammary Epithelial Cells: BRCA2mut/- HMECs Tissue Procurement Core, Cleveland Clinic Caputo et al.55 Human mammary cancer cell line: MCF7 Cleveland Clinic Research, cell and media production core facility Cat# ATCC, HTB-22 Human cervical cancer cell line: HeLa Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRM-CCL-2 Oligonucleotides siRNA sequences Dharmacon Horizon Discovery Supplementary file, this paper Software and algorithms R (version 4.5.3) R Software https://www.r-project.org/ Seurat (version 5.4.0) Hao, Y. et al., Dictionary learning for integrative, multimodal and scalable singlecell analysis. ..

    Tissue:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-FANCD2 (Clone EPR2302) Abcam Cat# ab108928, RRID: AB_10862535 Mouse monoclonal anti-phospho-Histone H3 Ser10 (Clone 6G3) Cell Signaling Technology Cat# 9706, RRID: AB_331748 Mouse monoclonal anti-Cyclin A2 (Clone 1C6C11) Proteintech Cat# 66391-1-Ig, RRID: AB_2881767 Rabbit polyclonal anti-53BP1 Cell Signaling Technology Cat# 4937, RRID: AB_10694558 Rat monoclonal anti-RPA32/RPA2 (Clone 4E4) Cell Signaling Technology Cat# 2208, RRID: AB_2238543 Mouse monoclonal anti-γH2AX Ser139 (Clone JBW301) Sigma-Aldrich (EMD Millipore) Cat# 05–636, RRID: AB_309864 Mouse monoclonal anti-DNA Polymerase iota (POLI, Clone OTI1H9) Abcam Cat# ab157244 Mouse monoclonal BV421-conjugated antiCD24 (Clone ML5) BD Biosciences Cat# 562789, RRID: AB_2737796 Mouse monoclonal Alexa Fluor 647-conjugated ani-EpCAM (Clone VU1D9) Cell Signaling Technology Cat# 5447, RRID: AB_10693458 Rabbit monoclonal anti-BRCA2 (Clone D9S6V) Cell Signaling Technology Cat# 10741, RRID: AB_2797730 Rabbit monoclonal anti-RAD52 (Clone EPR3464(2)) Abcam Cat# ab124971, RRID: AB_10971685 Mouse monoclonal anti-β-Actin (Clone 8H10D10) Cell Signaling Technology Cat# 3700, RRID: AB_2242334 Rabbit monoclonal anti-Vinculin (Clone E1E9V) Cell Signaling Technology Cat# 13901, RRID: AB_2728768 Mouse monoclonal anti-BrdU (Clone B44) BD Biosciences Cat# 347580, RRID: AB_400326 Rat monoclonal anti-BrdU (Clone BU1/75 (ICR1)) Abcam Cat# ab6326, RRID: AB_305426 Biological samples Human breast tissues from prophylactic mastectomies of BRCA2 mutation carriers Tissue Procurement Core, Cleveland Clinic N/A Chemicals, peptides, and recombinant proteins Aphidicolin Sigma-Aldrich Cat# 5047440001 Colcemid Gibco Cat# 15210 Potassium chloride Sigma Cat# P9327 Giemsa Sigma-Aldrich Cat# 32884 Cytochalasin-B Sigma Cat# C2743 CIdU (5-Chloro-2′-deoxyuridine) Sigma-Aldrich Cat# C6891 IdU (5-Iodo-2′-deoxyuridine) Sigma-Aldrich Cat# I7125 Lipofectamine RNAiMAX ThermoFisher Scientific Cat# 13778075 DAPI Invitrogen Cat# P36962 DMEM/F12 media ThermoFisher Scientific Cat# 11330057 Horse Serum ThermoFisher Scientific Cat# 16050122 Insulin Sigma Cat# I-1882 EGF Peprotech Cat# AF-100–15 Hydrocortisone Sigma Cat# H6909 (Continued on next page) 12 iScience 29, 117830, November 20, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Cholera toxin Sigma Aldrich Cat# C8052 Mammary Epithelial Cell Basal Medium ATCC Cat# PCS-600–030, Mammary Epithelial Cell Growth Kit ATCC Cat# PCS-600–040 DMEM/F-12 GlutaMAX ThermoFisher Scientific Cat# 10565018 L-glutamine ThermoFisher Scientific Cat# 25030081 Gentamycin/amphotericin-B ThermoFisher Scientific Cat# R01510 Critical commercial assays Click-iT EdU Alexa Fluor 488 flow cytometry assay kit Invitrogen Cat# C10425 Click-iT EdU Alexa Fluor 488 Imaging kit Invitrogen Cat# C10637 FxCycle Violet Ready Flow Reagent Invitrogen Cat# R37166 Live-or-Dye 510/551 Biotium Cat # 32012A MycoAlert Mycoplasma Detection Kit Lonza Cat# LT07–218 PierceTM Rapid Gold BCA Protein Assay Kit Thermo Scientific, Cat# A53225 RIPA buffer Cell Signaling Technology Cat# 9803/9806 Protease and phosphatase inhibitors Cell Signaling Technology Cat# 5872 PMSF Cell Signaling Technology Cat# 8553 SDS-PAGE Precast Protein Gels Bio-Rad Cat# 4561084 Clarity Max Western ECL Substrate Bio-Rad Cat# 1705062 Experimental models: Cell lines Human mammary epithelial cell line: MCF10A Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRL-10317 Primary Human Mammary Epithelial Cells: HMECs American Type Culture Collection (ATCC) Cat# ATCC, PCS-600–010 Primary BRCA2-mutant Human Mammary Epithelial Cells: BRCA2mut/- HMECs Tissue Procurement Core, Cleveland Clinic Caputo et al.55 Human mammary cancer cell line: MCF7 Cleveland Clinic Research, cell and media production core facility Cat# ATCC, HTB-22 Human cervical cancer cell line: HeLa Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRM-CCL-2 Oligonucleotides siRNA sequences Dharmacon Horizon Discovery Supplementary file, this paper Software and algorithms R (version 4.5.3) R Software https://www.r-project.org/ Seurat (version 5.4.0) Hao, Y. et al., Dictionary learning for integrative, multimodal and scalable singlecell analysis. ..

    Software:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-FANCD2 (Clone EPR2302) Abcam Cat# ab108928, RRID: AB_10862535 Mouse monoclonal anti-phospho-Histone H3 Ser10 (Clone 6G3) Cell Signaling Technology Cat# 9706, RRID: AB_331748 Mouse monoclonal anti-Cyclin A2 (Clone 1C6C11) Proteintech Cat# 66391-1-Ig, RRID: AB_2881767 Rabbit polyclonal anti-53BP1 Cell Signaling Technology Cat# 4937, RRID: AB_10694558 Rat monoclonal anti-RPA32/RPA2 (Clone 4E4) Cell Signaling Technology Cat# 2208, RRID: AB_2238543 Mouse monoclonal anti-γH2AX Ser139 (Clone JBW301) Sigma-Aldrich (EMD Millipore) Cat# 05–636, RRID: AB_309864 Mouse monoclonal anti-DNA Polymerase iota (POLI, Clone OTI1H9) Abcam Cat# ab157244 Mouse monoclonal BV421-conjugated antiCD24 (Clone ML5) BD Biosciences Cat# 562789, RRID: AB_2737796 Mouse monoclonal Alexa Fluor 647-conjugated ani-EpCAM (Clone VU1D9) Cell Signaling Technology Cat# 5447, RRID: AB_10693458 Rabbit monoclonal anti-BRCA2 (Clone D9S6V) Cell Signaling Technology Cat# 10741, RRID: AB_2797730 Rabbit monoclonal anti-RAD52 (Clone EPR3464(2)) Abcam Cat# ab124971, RRID: AB_10971685 Mouse monoclonal anti-β-Actin (Clone 8H10D10) Cell Signaling Technology Cat# 3700, RRID: AB_2242334 Rabbit monoclonal anti-Vinculin (Clone E1E9V) Cell Signaling Technology Cat# 13901, RRID: AB_2728768 Mouse monoclonal anti-BrdU (Clone B44) BD Biosciences Cat# 347580, RRID: AB_400326 Rat monoclonal anti-BrdU (Clone BU1/75 (ICR1)) Abcam Cat# ab6326, RRID: AB_305426 Biological samples Human breast tissues from prophylactic mastectomies of BRCA2 mutation carriers Tissue Procurement Core, Cleveland Clinic N/A Chemicals, peptides, and recombinant proteins Aphidicolin Sigma-Aldrich Cat# 5047440001 Colcemid Gibco Cat# 15210 Potassium chloride Sigma Cat# P9327 Giemsa Sigma-Aldrich Cat# 32884 Cytochalasin-B Sigma Cat# C2743 CIdU (5-Chloro-2′-deoxyuridine) Sigma-Aldrich Cat# C6891 IdU (5-Iodo-2′-deoxyuridine) Sigma-Aldrich Cat# I7125 Lipofectamine RNAiMAX ThermoFisher Scientific Cat# 13778075 DAPI Invitrogen Cat# P36962 DMEM/F12 media ThermoFisher Scientific Cat# 11330057 Horse Serum ThermoFisher Scientific Cat# 16050122 Insulin Sigma Cat# I-1882 EGF Peprotech Cat# AF-100–15 Hydrocortisone Sigma Cat# H6909 (Continued on next page) 12 iScience 29, 117830, November 20, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Cholera toxin Sigma Aldrich Cat# C8052 Mammary Epithelial Cell Basal Medium ATCC Cat# PCS-600–030, Mammary Epithelial Cell Growth Kit ATCC Cat# PCS-600–040 DMEM/F-12 GlutaMAX ThermoFisher Scientific Cat# 10565018 L-glutamine ThermoFisher Scientific Cat# 25030081 Gentamycin/amphotericin-B ThermoFisher Scientific Cat# R01510 Critical commercial assays Click-iT EdU Alexa Fluor 488 flow cytometry assay kit Invitrogen Cat# C10425 Click-iT EdU Alexa Fluor 488 Imaging kit Invitrogen Cat# C10637 FxCycle Violet Ready Flow Reagent Invitrogen Cat# R37166 Live-or-Dye 510/551 Biotium Cat # 32012A MycoAlert Mycoplasma Detection Kit Lonza Cat# LT07–218 PierceTM Rapid Gold BCA Protein Assay Kit Thermo Scientific, Cat# A53225 RIPA buffer Cell Signaling Technology Cat# 9803/9806 Protease and phosphatase inhibitors Cell Signaling Technology Cat# 5872 PMSF Cell Signaling Technology Cat# 8553 SDS-PAGE Precast Protein Gels Bio-Rad Cat# 4561084 Clarity Max Western ECL Substrate Bio-Rad Cat# 1705062 Experimental models: Cell lines Human mammary epithelial cell line: MCF10A Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRL-10317 Primary Human Mammary Epithelial Cells: HMECs American Type Culture Collection (ATCC) Cat# ATCC, PCS-600–010 Primary BRCA2-mutant Human Mammary Epithelial Cells: BRCA2mut/- HMECs Tissue Procurement Core, Cleveland Clinic Caputo et al.55 Human mammary cancer cell line: MCF7 Cleveland Clinic Research, cell and media production core facility Cat# ATCC, HTB-22 Human cervical cancer cell line: HeLa Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRM-CCL-2 Oligonucleotides siRNA sequences Dharmacon Horizon Discovery Supplementary file, this paper Software and algorithms R (version 4.5.3) R Software https://www.r-project.org/ Seurat (version 5.4.0) Hao, Y. et al., Dictionary learning for integrative, multimodal and scalable singlecell analysis. ..

    Analysis:

    Article Title: Polymerase iota coordinates adaptation to replication stress in BRCA2-deficient mammary epithelial cells.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit monoclonal anti-FANCD2 (Clone EPR2302) Abcam Cat# ab108928, RRID: AB_10862535 Mouse monoclonal anti-phospho-Histone H3 Ser10 (Clone 6G3) Cell Signaling Technology Cat# 9706, RRID: AB_331748 Mouse monoclonal anti-Cyclin A2 (Clone 1C6C11) Proteintech Cat# 66391-1-Ig, RRID: AB_2881767 Rabbit polyclonal anti-53BP1 Cell Signaling Technology Cat# 4937, RRID: AB_10694558 Rat monoclonal anti-RPA32/RPA2 (Clone 4E4) Cell Signaling Technology Cat# 2208, RRID: AB_2238543 Mouse monoclonal anti-γH2AX Ser139 (Clone JBW301) Sigma-Aldrich (EMD Millipore) Cat# 05–636, RRID: AB_309864 Mouse monoclonal anti-DNA Polymerase iota (POLI, Clone OTI1H9) Abcam Cat# ab157244 Mouse monoclonal BV421-conjugated antiCD24 (Clone ML5) BD Biosciences Cat# 562789, RRID: AB_2737796 Mouse monoclonal Alexa Fluor 647-conjugated ani-EpCAM (Clone VU1D9) Cell Signaling Technology Cat# 5447, RRID: AB_10693458 Rabbit monoclonal anti-BRCA2 (Clone D9S6V) Cell Signaling Technology Cat# 10741, RRID: AB_2797730 Rabbit monoclonal anti-RAD52 (Clone EPR3464(2)) Abcam Cat# ab124971, RRID: AB_10971685 Mouse monoclonal anti-β-Actin (Clone 8H10D10) Cell Signaling Technology Cat# 3700, RRID: AB_2242334 Rabbit monoclonal anti-Vinculin (Clone E1E9V) Cell Signaling Technology Cat# 13901, RRID: AB_2728768 Mouse monoclonal anti-BrdU (Clone B44) BD Biosciences Cat# 347580, RRID: AB_400326 Rat monoclonal anti-BrdU (Clone BU1/75 (ICR1)) Abcam Cat# ab6326, RRID: AB_305426 Biological samples Human breast tissues from prophylactic mastectomies of BRCA2 mutation carriers Tissue Procurement Core, Cleveland Clinic N/A Chemicals, peptides, and recombinant proteins Aphidicolin Sigma-Aldrich Cat# 5047440001 Colcemid Gibco Cat# 15210 Potassium chloride Sigma Cat# P9327 Giemsa Sigma-Aldrich Cat# 32884 Cytochalasin-B Sigma Cat# C2743 CIdU (5-Chloro-2′-deoxyuridine) Sigma-Aldrich Cat# C6891 IdU (5-Iodo-2′-deoxyuridine) Sigma-Aldrich Cat# I7125 Lipofectamine RNAiMAX ThermoFisher Scientific Cat# 13778075 DAPI Invitrogen Cat# P36962 DMEM/F12 media ThermoFisher Scientific Cat# 11330057 Horse Serum ThermoFisher Scientific Cat# 16050122 Insulin Sigma Cat# I-1882 EGF Peprotech Cat# AF-100–15 Hydrocortisone Sigma Cat# H6909 (Continued on next page) 12 iScience 29, 117830, November 20, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Cholera toxin Sigma Aldrich Cat# C8052 Mammary Epithelial Cell Basal Medium ATCC Cat# PCS-600–030, Mammary Epithelial Cell Growth Kit ATCC Cat# PCS-600–040 DMEM/F-12 GlutaMAX ThermoFisher Scientific Cat# 10565018 L-glutamine ThermoFisher Scientific Cat# 25030081 Gentamycin/amphotericin-B ThermoFisher Scientific Cat# R01510 Critical commercial assays Click-iT EdU Alexa Fluor 488 flow cytometry assay kit Invitrogen Cat# C10425 Click-iT EdU Alexa Fluor 488 Imaging kit Invitrogen Cat# C10637 FxCycle Violet Ready Flow Reagent Invitrogen Cat# R37166 Live-or-Dye 510/551 Biotium Cat # 32012A MycoAlert Mycoplasma Detection Kit Lonza Cat# LT07–218 PierceTM Rapid Gold BCA Protein Assay Kit Thermo Scientific, Cat# A53225 RIPA buffer Cell Signaling Technology Cat# 9803/9806 Protease and phosphatase inhibitors Cell Signaling Technology Cat# 5872 PMSF Cell Signaling Technology Cat# 8553 SDS-PAGE Precast Protein Gels Bio-Rad Cat# 4561084 Clarity Max Western ECL Substrate Bio-Rad Cat# 1705062 Experimental models: Cell lines Human mammary epithelial cell line: MCF10A Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRL-10317 Primary Human Mammary Epithelial Cells: HMECs American Type Culture Collection (ATCC) Cat# ATCC, PCS-600–010 Primary BRCA2-mutant Human Mammary Epithelial Cells: BRCA2mut/- HMECs Tissue Procurement Core, Cleveland Clinic Caputo et al.55 Human mammary cancer cell line: MCF7 Cleveland Clinic Research, cell and media production core facility Cat# ATCC, HTB-22 Human cervical cancer cell line: HeLa Cleveland Clinic Research, cell and media production core facility Cat# ATCC, CRM-CCL-2 Oligonucleotides siRNA sequences Dharmacon Horizon Discovery Supplementary file, this paper Software and algorithms R (version 4.5.3) R Software https://www.r-project.org/ Seurat (version 5.4.0) Hao, Y. et al., Dictionary learning for integrative, multimodal and scalable singlecell analysis. ..



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    Cigarette smoke and TCDD increase <t>IL22</t> production in an AHR-dependent manner. A − C, In vitro naïve CD4 + T-cell polarization schema ( A ). CYP1A1 mRNA expression, IL22 mRNA expression, and IL22 protein concentration in culture supernatant after in vitro naïve CD4 + T-cell polarization with CSE ( B and C, n = 3/group), 6-formylindolo(3,2-b)carbazole (FICZ) and TCDD ( D, n = 2–3/group), and TCDD with AHR inhibitor CH-223191 ( E, n = 3/group). F, Experimental schema of naïve CD4 + T-cell polarization with human splenocytes. G, CYP1B1 and IL22 mRNA expression and IL22 protein concentration in the culture supernatant after naïve CD4 + T-cell polarization with TCDD and CH-223191 ( n = 3 technical replicates/group). H, Experimental schema, wherein the culture supernatant of polarized naïve CD4 + T cells was placed upon 7940b PDAC cells for 15 minutes, and protein was then isolated for Western blot. I, Western blot showing pSTAT3, total STAT3, and GAPDH expression among 7940b PDAC cells treated with unpolarized Th0 T-cell media, TCDD-polarized T-cell media, TCDD-polarized media with IL22-binding protein (IL22bp), TCDD alone, negative control, and IL22 alone. J, Schema of orthotopic tumor model with CSE or TCDD. K, IL22 mRNA expression in orthotopic tumors treated with CSE ( n = 3–5/group) or TCDD ( n = 4/group). Data represented as the mean ± SD unless otherwise noted (portion of the figure created with BioRender.com ).
    Ht 7700 Control Software Version 02 22, supplied by Hitachi Ltd, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ht 7700 control software version 02 22 - by Bioz Stars, 2026-10
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    Thermo Fisher tetracycline control
    Cigarette smoke and TCDD increase <t>IL22</t> production in an AHR-dependent manner. A − C, In vitro naïve CD4 + T-cell polarization schema ( A ). CYP1A1 mRNA expression, IL22 mRNA expression, and IL22 protein concentration in culture supernatant after in vitro naïve CD4 + T-cell polarization with CSE ( B and C, n = 3/group), 6-formylindolo(3,2-b)carbazole (FICZ) and TCDD ( D, n = 2–3/group), and TCDD with AHR inhibitor CH-223191 ( E, n = 3/group). F, Experimental schema of naïve CD4 + T-cell polarization with human splenocytes. G, CYP1B1 and IL22 mRNA expression and IL22 protein concentration in the culture supernatant after naïve CD4 + T-cell polarization with TCDD and CH-223191 ( n = 3 technical replicates/group). H, Experimental schema, wherein the culture supernatant of polarized naïve CD4 + T cells was placed upon 7940b PDAC cells for 15 minutes, and protein was then isolated for Western blot. I, Western blot showing pSTAT3, total STAT3, and GAPDH expression among 7940b PDAC cells treated with unpolarized Th0 T-cell media, TCDD-polarized T-cell media, TCDD-polarized media with IL22-binding protein (IL22bp), TCDD alone, negative control, and IL22 alone. J, Schema of orthotopic tumor model with CSE or TCDD. K, IL22 mRNA expression in orthotopic tumors treated with CSE ( n = 3–5/group) or TCDD ( n = 4/group). Data represented as the mean ± SD unless otherwise noted (portion of the figure created with BioRender.com ).
    Tetracycline Control, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/controller+22/Tetracycline/us12454703-242-5-11
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    Image Search Results


    Journal: Food Science & Nutrition

    Article Title: Lactic Acid Fermentation Improves the Bioaccessibility and Functional Quality of Reduced‐Calorie Sour Cherry Beverages During Cold Storage

    doi: 10.1002/fsn3.72038

    Figure Lengend Snippet: Changes in caloric value, sugar content, LAB viability, and antimicrobial activity against Bacillus cereus in lactic acid fermented sour cherry beverages over 28 days of storage at 7‐day intervals.

    Article Snippet: Antibacterial activity was observed only in SCN9‐Mix and control samples against Bacillus cereus ATCC 11778, while cytotoxicity assays indicated modest inhibitory effects toward MCF‐7 breast cancer cells, with cell viability ranging from 87.64% to 94.45% in freshly prepared samples and decreasing over 28 days.

    Techniques: Activity Assay, Food & Beverages, Control

    Cigarette smoke and TCDD increase IL22 production in an AHR-dependent manner. A − C, In vitro naïve CD4 + T-cell polarization schema ( A ). CYP1A1 mRNA expression, IL22 mRNA expression, and IL22 protein concentration in culture supernatant after in vitro naïve CD4 + T-cell polarization with CSE ( B and C, n = 3/group), 6-formylindolo(3,2-b)carbazole (FICZ) and TCDD ( D, n = 2–3/group), and TCDD with AHR inhibitor CH-223191 ( E, n = 3/group). F, Experimental schema of naïve CD4 + T-cell polarization with human splenocytes. G, CYP1B1 and IL22 mRNA expression and IL22 protein concentration in the culture supernatant after naïve CD4 + T-cell polarization with TCDD and CH-223191 ( n = 3 technical replicates/group). H, Experimental schema, wherein the culture supernatant of polarized naïve CD4 + T cells was placed upon 7940b PDAC cells for 15 minutes, and protein was then isolated for Western blot. I, Western blot showing pSTAT3, total STAT3, and GAPDH expression among 7940b PDAC cells treated with unpolarized Th0 T-cell media, TCDD-polarized T-cell media, TCDD-polarized media with IL22-binding protein (IL22bp), TCDD alone, negative control, and IL22 alone. J, Schema of orthotopic tumor model with CSE or TCDD. K, IL22 mRNA expression in orthotopic tumors treated with CSE ( n = 3–5/group) or TCDD ( n = 4/group). Data represented as the mean ± SD unless otherwise noted (portion of the figure created with BioRender.com ).

    Journal: Cancer Discovery

    Article Title: Aryl Hydrocarbon Receptor Ligands Drive Pancreatic Cancer Initiation and Progression through Protumorigenic T-cell Polarization

    doi: 10.1158/2159-8290.CD-25-0377

    Figure Lengend Snippet: Cigarette smoke and TCDD increase IL22 production in an AHR-dependent manner. A − C, In vitro naïve CD4 + T-cell polarization schema ( A ). CYP1A1 mRNA expression, IL22 mRNA expression, and IL22 protein concentration in culture supernatant after in vitro naïve CD4 + T-cell polarization with CSE ( B and C, n = 3/group), 6-formylindolo(3,2-b)carbazole (FICZ) and TCDD ( D, n = 2–3/group), and TCDD with AHR inhibitor CH-223191 ( E, n = 3/group). F, Experimental schema of naïve CD4 + T-cell polarization with human splenocytes. G, CYP1B1 and IL22 mRNA expression and IL22 protein concentration in the culture supernatant after naïve CD4 + T-cell polarization with TCDD and CH-223191 ( n = 3 technical replicates/group). H, Experimental schema, wherein the culture supernatant of polarized naïve CD4 + T cells was placed upon 7940b PDAC cells for 15 minutes, and protein was then isolated for Western blot. I, Western blot showing pSTAT3, total STAT3, and GAPDH expression among 7940b PDAC cells treated with unpolarized Th0 T-cell media, TCDD-polarized T-cell media, TCDD-polarized media with IL22-binding protein (IL22bp), TCDD alone, negative control, and IL22 alone. J, Schema of orthotopic tumor model with CSE or TCDD. K, IL22 mRNA expression in orthotopic tumors treated with CSE ( n = 3–5/group) or TCDD ( n = 4/group). Data represented as the mean ± SD unless otherwise noted (portion of the figure created with BioRender.com ).

    Article Snippet: Controls included 1 nmol/L TCDD in complete DMEM (TCDD alone), negative control with DMEM media alone, and positive control with IL22 (20 ng/mL, R&D Systems, #582-ML-010) in complete DMEM.

    Techniques: In Vitro, Expressing, Protein Concentration, Isolation, Western Blot, Binding Assay, Negative Control

    TCDD induced PDAC growth is mediated by IL22 signaling and Treg infiltration. A, Genetic makeup of the IL22-tdTomato reporter mouse (Catch-22) and experimental schema showing 3-week treatment course with TCDD. B and C, Representative mfIHC ( B ) and quantification of IL22 + immune cells ( C ) in the duodenum of Catch-22 mice treated with vehicle or TCDD for 3 weeks, n = 3 mice/group, n = 25–26 regions of interest/group. D, Genetic makeup of the IL22 eGFP reporter mouse, with quantification of the proportion of T cells, IL22 + T cells, ILCs, and IL22 + ILCs among pancreata of mice treated with 3 weeks of vehicle or TCDD, n = 3/group. E and F, Experimental schema, n = 6–9/group, and tumor weight and volume for treatment of WT mice with TCDD, IL22 −/− mice with TCDD, and IL22 −/− mice with vehicle for 19 days. G and H, Representative mfIHC ( G, scale bars, 50 μm, inlaid white arrows identifying CD3 + FOXP3 + Tregs), and quantification of T cell, Th cell, CD8 + T cell, and Treg infiltration via mfIHC ( H ), n = 4–5 mice/group, and quantification of 17 regions of interest/group. Phenotypes were identified as follows: T cells (CD3 + ), Th cells (CD3 + CD8 − FOXP3 − ), CD8 + T cells (CD3 + CD8 + ), and Tregs (CD3 + FOXP3 + CD8 − ). I, Quantification of T cells, CD4 + T cells, CD8 + T cells, and Tregs via flow cytometry of orthotopic tumors of WT mice treated with vehicle or TCDD, n = 3–4/group. J, Experimental design, n = 4–8/group, and tumor weight and volume of the orthotopic model of WT mice or FOXP3- DTR mice, allowing for inducible depletion of Tregs, treated with vehicle or TCDD for 16 days. Groups: WT treated with vehicle, WT treated with TCDD, and FOXP3- DTR treated with TCDD. K, Experimental schema and representative gating strategy on CD45 + CD3 + intratumoral T cells from orthotopic tumors of WT mice treated with vehicle or TCDD for 19 days. L, Quantification of IL22 + cells among CD4 + T cells, FOXP3 + cells among CD4 + T cells, and IL22 + cells among FOXP3 + Tregs. Data are represented as the mean ± SD unless otherwise noted. DAPI, 4′6-diamidino-2-phenylindole.

    Journal: Cancer Discovery

    Article Title: Aryl Hydrocarbon Receptor Ligands Drive Pancreatic Cancer Initiation and Progression through Protumorigenic T-cell Polarization

    doi: 10.1158/2159-8290.CD-25-0377

    Figure Lengend Snippet: TCDD induced PDAC growth is mediated by IL22 signaling and Treg infiltration. A, Genetic makeup of the IL22-tdTomato reporter mouse (Catch-22) and experimental schema showing 3-week treatment course with TCDD. B and C, Representative mfIHC ( B ) and quantification of IL22 + immune cells ( C ) in the duodenum of Catch-22 mice treated with vehicle or TCDD for 3 weeks, n = 3 mice/group, n = 25–26 regions of interest/group. D, Genetic makeup of the IL22 eGFP reporter mouse, with quantification of the proportion of T cells, IL22 + T cells, ILCs, and IL22 + ILCs among pancreata of mice treated with 3 weeks of vehicle or TCDD, n = 3/group. E and F, Experimental schema, n = 6–9/group, and tumor weight and volume for treatment of WT mice with TCDD, IL22 −/− mice with TCDD, and IL22 −/− mice with vehicle for 19 days. G and H, Representative mfIHC ( G, scale bars, 50 μm, inlaid white arrows identifying CD3 + FOXP3 + Tregs), and quantification of T cell, Th cell, CD8 + T cell, and Treg infiltration via mfIHC ( H ), n = 4–5 mice/group, and quantification of 17 regions of interest/group. Phenotypes were identified as follows: T cells (CD3 + ), Th cells (CD3 + CD8 − FOXP3 − ), CD8 + T cells (CD3 + CD8 + ), and Tregs (CD3 + FOXP3 + CD8 − ). I, Quantification of T cells, CD4 + T cells, CD8 + T cells, and Tregs via flow cytometry of orthotopic tumors of WT mice treated with vehicle or TCDD, n = 3–4/group. J, Experimental design, n = 4–8/group, and tumor weight and volume of the orthotopic model of WT mice or FOXP3- DTR mice, allowing for inducible depletion of Tregs, treated with vehicle or TCDD for 16 days. Groups: WT treated with vehicle, WT treated with TCDD, and FOXP3- DTR treated with TCDD. K, Experimental schema and representative gating strategy on CD45 + CD3 + intratumoral T cells from orthotopic tumors of WT mice treated with vehicle or TCDD for 19 days. L, Quantification of IL22 + cells among CD4 + T cells, FOXP3 + cells among CD4 + T cells, and IL22 + cells among FOXP3 + Tregs. Data are represented as the mean ± SD unless otherwise noted. DAPI, 4′6-diamidino-2-phenylindole.

    Article Snippet: Controls included 1 nmol/L TCDD in complete DMEM (TCDD alone), negative control with DMEM media alone, and positive control with IL22 (20 ng/mL, R&D Systems, #582-ML-010) in complete DMEM.

    Techniques: Flow Cytometry

    TCDD-mediated IL22 production and Treg accumulation is dependent upon CD4 + T cell AHR signaling. A, CYP1A1 and CYP1B1 mRNA expression from CD4 + TILs isolated from orthotopic tumors of WT mice treated with vehicle or TCDD for 19 days. B, Genetic makeup of the CD4 Cre AHR mice with inducible CD4-specific deletion of AHR signaling. C, IL22 mRNA expression and protein concentration in the culture supernatant of naïve CD4 + T cells isolated from WT or CD4 Cre AHR mice and polarized under nonstimulating (Th0) conditions, with TCDD, or with TCDD and CH-223191, an AHR inhibitor. D − F, Experimental design ( D ), tumor weight and volume ( E ), and CYP1A1 and IL22 mRNA expression ( F ) from tumors of an orthotopic model utilizing WT mice and CD4-Cre AHR −/− mice treated with vehicle or TCDD, n = 4–7 mice/group. G and H, Representative mfIHC ( G, scale bars, 50 μm, inlaid white arrows identifying CD3 + CD8 + T cell), and quantification ( H ) of CD8 + T cell (CD3 + CD8 + FOXP3 − ) and Treg (CD3 + FOXP3 + CD8 − ) infiltration among orthotopic tumors of WT or CD4 Cre AHR mice treated with vehicle or TCDD, n = 17–39 regions of interest/group. I, Experimental design and ( J ) tumor weight and volume for WT mice treated with vehicle, AHR inhibitor CH-223191, TCDD, or TCDD and the AHR inhibitor for 19 days, n = 7–10/group. Data represented as the mean ± SD unless otherwise noted. 4′6-diamidino-2-phenylindole.

    Journal: Cancer Discovery

    Article Title: Aryl Hydrocarbon Receptor Ligands Drive Pancreatic Cancer Initiation and Progression through Protumorigenic T-cell Polarization

    doi: 10.1158/2159-8290.CD-25-0377

    Figure Lengend Snippet: TCDD-mediated IL22 production and Treg accumulation is dependent upon CD4 + T cell AHR signaling. A, CYP1A1 and CYP1B1 mRNA expression from CD4 + TILs isolated from orthotopic tumors of WT mice treated with vehicle or TCDD for 19 days. B, Genetic makeup of the CD4 Cre AHR mice with inducible CD4-specific deletion of AHR signaling. C, IL22 mRNA expression and protein concentration in the culture supernatant of naïve CD4 + T cells isolated from WT or CD4 Cre AHR mice and polarized under nonstimulating (Th0) conditions, with TCDD, or with TCDD and CH-223191, an AHR inhibitor. D − F, Experimental design ( D ), tumor weight and volume ( E ), and CYP1A1 and IL22 mRNA expression ( F ) from tumors of an orthotopic model utilizing WT mice and CD4-Cre AHR −/− mice treated with vehicle or TCDD, n = 4–7 mice/group. G and H, Representative mfIHC ( G, scale bars, 50 μm, inlaid white arrows identifying CD3 + CD8 + T cell), and quantification ( H ) of CD8 + T cell (CD3 + CD8 + FOXP3 − ) and Treg (CD3 + FOXP3 + CD8 − ) infiltration among orthotopic tumors of WT or CD4 Cre AHR mice treated with vehicle or TCDD, n = 17–39 regions of interest/group. I, Experimental design and ( J ) tumor weight and volume for WT mice treated with vehicle, AHR inhibitor CH-223191, TCDD, or TCDD and the AHR inhibitor for 19 days, n = 7–10/group. Data represented as the mean ± SD unless otherwise noted. 4′6-diamidino-2-phenylindole.

    Article Snippet: Controls included 1 nmol/L TCDD in complete DMEM (TCDD alone), negative control with DMEM media alone, and positive control with IL22 (20 ng/mL, R&D Systems, #582-ML-010) in complete DMEM.

    Techniques: Expressing, Isolation, Protein Concentration