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genematcher™ software  (Paracel BLAST)

 
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    Structured Review

    Paracel BLAST genematcher™ software
    Genematcher™ Software, supplied by Paracel BLAST, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/computer+program+blastn/genematcher2/us07172891-811-18-20
    Average 90 stars, based on 1 article reviews
    genematcher™ software - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    other:

    Article Title: Polypeptides having xyloglucanase activity and nucleic acids encoding same
    Article Snippet: The resulting contigs and singletons were translated in six frames and searched against publicly available protein databases using GeneMatcherTM software (Paracel, Inc., Pasadena, Calif.) with a modified Smith-Waterman algorithm using the BLOSUM 62 matrix.

    Article Title: Methods for transforming and expression screening of filamentous fungal cells with a DNA library
    Article Snippet: The resulting contigs and singletons were translated in six frames and searched against publicly available protein databases using GeneMatcherTM software (Paracel, Inc., Pasadena, Calif.) with a modified Smith-Waterman algorithm using the BLOSUM 62 matrix.

    Sequencing:

    Article Title: Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures
    Article Snippet: .. Sequence alignments As these ITS2 sequences are globally homologous, global all-against-all pair-wise alignments were calculated according to the Needleman and Wunsch algorithm ( Needleman and Wunsch 1970 ) using a GeneMatcher2 system (Paracel, Inc.) with default settings. ..

    Activity Assay:

    Article Title:
    Article Snippet: For purposes of the present invention, the degree of identity between two amino acid sequences is determined by the Smith-Waterman Protein method for the Genematcher2, as implemented by Paracel Inc. (Pasadena, Calif.), or the BLASTP method as described by Altschul et al., 1990, Journal of Molecular Biology 215: 403-410. .. For purposes of the present invention, the degree of identity between two nucleotide sequences is determined by the Smith Waterman nucleotide method for the Genematcher2 or BLASTN for the BlastMachine as implemented by Paracel Inc. Polypeptide Fragment: The term “polypeptide fragment” is defined herein as a polypeptide, which retains biological activity, having one or more amino acids deleted from the amino and/or carboxyl terminus of a polypeptide encoded by any of the genes of the present invention, i.e., polypeptides of SEQ ID NOs: 4199-8395. ..



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