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diamond blastx software  (Unigene)

 
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    Unigene diamond blastx software
    Diamond Blastx Software, supplied by Unigene, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/computer+program+blastn/diamond+blastx+software/pm37629067-302-5-15
    Average 90 stars, based on 1 article reviews
    diamond blastx software - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    other:

    Article Title: Research on the Molecular Mechanisms and Key Gene Discovery in Quercus variabilis Root Pruning Based on Transcriptomics and Hormone Profiling
    Article Snippet: Unigene sequences were aligned against databases including the Kyoto Encyclopedia of Genes and Genomes (KEGG, https://www.genome.jp/kegg , accessed on 18 February 2023), NR, Swiss-Prot, Gene Ontology (GO, https://www.geneontology.org , accessed on 18 February 2023), COG/KOG, and Trembl using DIAMOND BLASTX software version 0.9.24.125 [ ].

    Article Title: Identification of Key Genes Involved in Sesquiterpene Synthesis in Nardostachys jatamansi Based on Transcriptome and Component Analysis
    Article Snippet: The UniGene sequences were annotated against the KEGG, NR, Swiss-Prot, GO, COG/KOG and TrEMBL databases using the DIAMOND BLASTX v2.0.9.

    Article Title: Metabolite and Transcriptomic Changes Reveal the Cold Stratification Process in Sinopodophyllum hexandrum Seeds.
    Article Snippet: We utilized the DIAMOND [50] BLASTX software to align the Unigene sequences against multiple databases, including KEGG, NR, Swiss-Prot, GO, KOG, and Trembl, to predict the amino acid sequences of the Unigenes.

    Article Title: Metabolite and Transcriptomic Changes Reveal the Cold Stratification Process in Sinopodophyllum hexandrum Seeds.
    Article Snippet: Transcriptome Analysis We utilized the DIAMOND [50] BLASTX software to align the Unigene sequences against multiple databases, including KEGG, NR, Swiss-Prot, GO, KOG, and Trembl, to predict the amino acid sequences of the Unigenes.

    Software:

    Article Title: Transcriptome analysis and genome-wide identification of the dehydration-responsive element binding gene family in jackfruit under cold stress
    Article Snippet: Trinity software was used to concatenate clean reads, and Corset hierarchical clustering was used to obtain the longest Cluster sequence, which was further analyzed as Unigene. .. DIAMOND BLASTX software was used to compare Unigene with Kyoto Encyclopedia of Genes and Genomes (KEGG), RefSeq non-redundant proteins (NR), Swiss-Prot, Gene Ontology (GO), clusters of orthologous groups (COG) / euKaryotic Ortholog Groups (KOG), and TrEMBL databases to predict the amino acid sequence of Unigene. .. Subsequently, the HMMER software was compared with the Pfam database, and finally the annotation information of Unigene was obtained.

    Article Title: Metabolomics combined with physiology and transcriptomics reveal the regulation of key nitrogen metabolic pathways in alfalfa by foliar spraying with nano-selenium.
    Article Snippet: .. Unigene sequences were aligned with KEGG and GO databases using Diamond Blastx software to complete functional gene annotation. ..

    Article Title: Metabolite and Transcriptomic Changes Reveal the Cold Stratification Process in Sinopodophyllum hexandrum Seeds
    Article Snippet: .. We utilized the DIAMOND [ ] BLASTX software to align the Unigene sequences against multiple databases, including KEGG, NR, Swiss-Prot, GO, KOG, and Trembl, to predict the amino acid sequences of the Unigenes. .. Following the completion of the prediction, we further employed the HMMER software to align the sequences against the Pfam database, aiming to acquire detailed annotation information for the Unigenes.

    Article Title: Integrative analysis of metabolite and transcriptome reveals the biosynthetic pathway and candidate genes for iridoid glycoside biosynthesis in Neopicrorhiza scrophulariiflora (Pennell) D.Y.Hong
    Article Snippet: .. In this experiment, DIAMOND ( ) BLASTX software was used to annotate the UniGene sequences with KEGG, NR, Swiss-Prot, GO, COG/KOG, and TrEMBL databases, and finally, 158,284 genes were annotated ( ). ..

    Sequencing:

    Article Title: Transcriptome analysis and genome-wide identification of the dehydration-responsive element binding gene family in jackfruit under cold stress
    Article Snippet: Trinity software was used to concatenate clean reads, and Corset hierarchical clustering was used to obtain the longest Cluster sequence, which was further analyzed as Unigene. .. DIAMOND BLASTX software was used to compare Unigene with Kyoto Encyclopedia of Genes and Genomes (KEGG), RefSeq non-redundant proteins (NR), Swiss-Prot, Gene Ontology (GO), clusters of orthologous groups (COG) / euKaryotic Ortholog Groups (KOG), and TrEMBL databases to predict the amino acid sequence of Unigene. .. Subsequently, the HMMER software was compared with the Pfam database, and finally the annotation information of Unigene was obtained.

    Functional Assay:

    Article Title: Metabolomics combined with physiology and transcriptomics reveal the regulation of key nitrogen metabolic pathways in alfalfa by foliar spraying with nano-selenium.
    Article Snippet: .. Unigene sequences were aligned with KEGG and GO databases using Diamond Blastx software to complete functional gene annotation. ..



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