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inform tissue finder halo image analysis software indica labs  (Indica Labs)

 
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    Structured Review

    Indica Labs inform tissue finder halo image analysis software indica labs
    Inform Tissue Finder Halo Image Analysis Software Indica Labs, supplied by Indica Labs, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/computer+image+analysis+software/analysis+halo+image+software/pm35523176-306-247-252
    Average 86 stars, based on 1 article reviews
    inform tissue finder halo image analysis software indica labs - by Bioz Stars, 2026-11
    86/100 stars

    Images

    Related Articles

    Multiplex Assay:

    Article Title: Virus-specific resident memory T cell networks sustain immunity in human oral mucosa.
    Article Snippet: Background: Durable protection against viral infections relies on tissue-resident memory T (TRM) cells at pathogen entry sites.. The oral cavity is a critical mucosal barrier frequently exposed to viral pathogens; however, the phenotypic characteristics and spatial organization of virus-specific T cells in the human oral mucosa remain poorly understood.. Objective: This study aimed to define how virus-specific T cells maintain long-term residency in the oral mucosa and to identify cellular interactions supporting their persistence.

    Immunofluorescence:

    Article Title: Virus-specific resident memory T cell networks sustain immunity in human oral mucosa.
    Article Snippet: Background: Durable protection against viral infections relies on tissue-resident memory T (TRM) cells at pathogen entry sites.. The oral cavity is a critical mucosal barrier frequently exposed to viral pathogens; however, the phenotypic characteristics and spatial organization of virus-specific T cells in the human oral mucosa remain poorly understood.. Objective: This study aimed to define how virus-specific T cells maintain long-term residency in the oral mucosa and to identify cellular interactions supporting their persistence.

    Software:

    Article Title: Virus-specific resident memory T cell networks sustain immunity in human oral mucosa.
    Article Snippet: Background: Durable protection against viral infections relies on tissue-resident memory T (TRM) cells at pathogen entry sites.. The oral cavity is a critical mucosal barrier frequently exposed to viral pathogens; however, the phenotypic characteristics and spatial organization of virus-specific T cells in the human oral mucosa remain poorly understood.. Objective: This study aimed to define how virus-specific T cells maintain long-term residency in the oral mucosa and to identify cellular interactions supporting their persistence.

    Article Title: Integrin α6-targeted photodynamic therapy potentiates PD-1 blockade in MSS colorectal cancer.
    Article Snippet: .. H-scores were quantified by HALO® quantitative image analysis software (Indica Labs, USA). .. Human and mouse colorectal adenocarcinoma cell lines (HCT116, SW480, CT26, MC38) and human normal colon epithelial cell lines (FHC, NCM460) were purchased from the American Type Culture Collection (ATCC; USA).

    Article Title: POSTN + cancer-associated fibroblasts forming fortress-like barrier to mediate immunotherapy resistance in colorectal cancer.
    Article Snippet: 35 Immune checkpoint blockade (ICB) therapy has demonstrated promising efficacy in 36 patients with mismatch repair-deficient (dMMR) or microsatellite instability-high 37 (MSI-H) colorectal cancer (CRC).. However, a substantial proportion of these patients 38 remain resistant to treatment.. This study aims to investigate the mechanisms underlying 39 ICB resistance in dMMR/MSI-H CRCs.

    Article Title: Spatial cellular order underlies locally-confined mechanisms of immune resistance in oropharyngeal cancer.
    Article Snippet: AR TI CL E IN P RE SS PD-1 Abcam [EPR4877(2)] ab137132 750 Leica ER2(AR9640) / 20 min Akoya OPAL POLYMER HRP MS + RB, 1X, (ARH1001EA) 570 150 CD8 Abcam [EPR10640- 2] ab215041 2000 Leica ER2(AR9640) / 20 min Akoya OPAL POLYMER HRP MS + RB, 1X, (ARH1001EA) 480 150 PanCK Santa Cruz [AE1/AE3] sc-81714 400 Leica ER2(AR9640) / 20 min Akoya OPAL POLYMER HRP MS + RB, 1X, (ARH1001EA) 780 50 .. Whole slide analysis of each stained slide was performed with HALO Image Analysis software (v3.3, Indica Labs). ..

    Article Title: ZEB1 integrates stemness, differentiation blockade and immune suppression to orchestrate osteosarcoma aggressiveness.
    Article Snippet: Masson's Trichrome staining were performed on murine samples with Diapath kit following the manufacturer’s instructions. .. Masson’s trichrome images were analyzed using the "Area Quantification v2.4.2" algorithm of HALO software (Indica Labs) to quantify the blue-stained collagen fibers. ..

    Article Title: Melanoma cell states shape spatial tumor-immune ecosystems to dictate the efficacy of anti-PD1 immunotherapy.
    Article Snippet: Segmentation of the scans was performed with inForm version 2.4.8 (Akoya Biosciences). .. The scans were then analyzed using the HALO- AI image analysis software V.3.5 (Indica Labs, London, UK). ..

    Staining:

    Article Title: Spatial cellular order underlies locally-confined mechanisms of immune resistance in oropharyngeal cancer.
    Article Snippet: AR TI CL E IN P RE SS PD-1 Abcam [EPR4877(2)] ab137132 750 Leica ER2(AR9640) / 20 min Akoya OPAL POLYMER HRP MS + RB, 1X, (ARH1001EA) 570 150 CD8 Abcam [EPR10640- 2] ab215041 2000 Leica ER2(AR9640) / 20 min Akoya OPAL POLYMER HRP MS + RB, 1X, (ARH1001EA) 480 150 PanCK Santa Cruz [AE1/AE3] sc-81714 400 Leica ER2(AR9640) / 20 min Akoya OPAL POLYMER HRP MS + RB, 1X, (ARH1001EA) 780 50 .. Whole slide analysis of each stained slide was performed with HALO Image Analysis software (v3.3, Indica Labs). ..

    Derivative Assay:

    Article Title: Single-Cell Reveal GALNT7-Dependent Ferroptosis Suppression as a Mechanism of Immunotherapy Resistance in Non-Small Cell Lung Cancer.
    Article Snippet: Whole-slide luorescence images were acquired on a Zeiss Axio Scan.Z1 sing a Plan-Apochromat 20 ×/0.8 NA objective (whole slide) nd 40 ×/0.95 NA for high-magnification Merge composites and nlarge insets; exposure, gain, and illumination were fixed across amples. .. Quantification was performed in HALO (Indica Labs) 3.x with the HighPlex FL module, using thresholds derived from egative/isotype and single-stain controls and then batch-applied o the cohort. ..



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    Effect of stefin B and cystatin C deficiency on proliferation and cell death. ( A ) Cell proliferation in primary tumors was determined through immunodetection of Ki67 in PyMT;WT and PyMT;DKO mice at 14 weeks of age. Representative images and quantification of Ki67-positive cells as a percentage of total cells in PyMT;WT (n = 11) and PyMT;DKO (n = 10) tumors. Ki67 index was calculated from 10 high-power fields per tumor <t>using</t> <t>computer-assisted</t> data analysis in ImageJ. Differences were analyzed using Student’s t -test. ( B ) Cell death in primary tumors from PyMT;WT and PyMT;DKO mice at 14 weeks of age was determined through TUNEL assays. Representative images and quantification of TUNEL-positive cells as a percentage of total cells in PyMT;WT (n = 9) and PyMT;DKO (n = 8) tumors. The TUNEL+ index was calculated from 10 high-power fields per tumor using computer-assisted data analysis in ImageJ. Differences were analyzed using Student’s t -test.
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    Image Search Results


    Effect of stefin B and cystatin C deficiency on proliferation and cell death. ( A ) Cell proliferation in primary tumors was determined through immunodetection of Ki67 in PyMT;WT and PyMT;DKO mice at 14 weeks of age. Representative images and quantification of Ki67-positive cells as a percentage of total cells in PyMT;WT (n = 11) and PyMT;DKO (n = 10) tumors. Ki67 index was calculated from 10 high-power fields per tumor using computer-assisted data analysis in ImageJ. Differences were analyzed using Student’s t -test. ( B ) Cell death in primary tumors from PyMT;WT and PyMT;DKO mice at 14 weeks of age was determined through TUNEL assays. Representative images and quantification of TUNEL-positive cells as a percentage of total cells in PyMT;WT (n = 9) and PyMT;DKO (n = 8) tumors. The TUNEL+ index was calculated from 10 high-power fields per tumor using computer-assisted data analysis in ImageJ. Differences were analyzed using Student’s t -test.

    Journal: Cells

    Article Title: Stefin B and Cystatin C Deficiency Suppresses Tumor Growth and Alters Tumor Microenvironment in a Breast Cancer Model

    doi: 10.3390/cells15040360

    Figure Lengend Snippet: Effect of stefin B and cystatin C deficiency on proliferation and cell death. ( A ) Cell proliferation in primary tumors was determined through immunodetection of Ki67 in PyMT;WT and PyMT;DKO mice at 14 weeks of age. Representative images and quantification of Ki67-positive cells as a percentage of total cells in PyMT;WT (n = 11) and PyMT;DKO (n = 10) tumors. Ki67 index was calculated from 10 high-power fields per tumor using computer-assisted data analysis in ImageJ. Differences were analyzed using Student’s t -test. ( B ) Cell death in primary tumors from PyMT;WT and PyMT;DKO mice at 14 weeks of age was determined through TUNEL assays. Representative images and quantification of TUNEL-positive cells as a percentage of total cells in PyMT;WT (n = 9) and PyMT;DKO (n = 8) tumors. The TUNEL+ index was calculated from 10 high-power fields per tumor using computer-assisted data analysis in ImageJ. Differences were analyzed using Student’s t -test.

    Article Snippet: The average size of metastases was quantified using computer-assisted analysis with CellSens Imaging software (Version 1.17; Olympus, Tokyo, Japan).

    Techniques: Immunodetection, TUNEL Assay