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raw sequencing data  (Oxford Nanopore)

 
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    Oxford Nanopore raw sequencing data
    Raw Sequencing Data, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/computer+code+data+collection+illumina+sequencing+platform/raw+sequencing+data/pm34140668-524-8-20
    Average 90 stars, based on 1 article reviews
    raw sequencing data - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    Generated:

    Article Title: Efficient targeted recombination with CRISPR/Cas9 in hybrids of Caenorhabditis nematodes with suppressed recombination
    Article Snippet: .. The Oxford Nanopore sequencing raw reads generated in this study were submitted to the NCBI BioProject database under accession number PRJNA947947. ..

    Sequencing:

    Article Title: Comparative genomic analysis identifies potential adaptive variation in Mycoplasma ovipneumoniae
    Article Snippet: Because M. ovipneumoniae is a fastidious micro-organism known to present challenges for enrichment culture from nasal swabs, we tested for potential contamination with non- Mycoplasma sequences using the metagenomic classifier Centrifuge v.1.0.4 ( ) to classify the cleaned Illumina sequence reads. .. For samples with ONT sequence data, raw ONT sequence reads were demultiplexed by barcode and base-called using Guppy v.4.2.2 (Oxford Nanopore Technologies Ltd.). .. For samples with ONT sequence data, raw ONT sequence reads were demultiplexed by barcode and base-called using Guppy v.4.2.2 (Oxford Nanopore Technologies Ltd.).

    Article Title: Phage therapy candidates from Sphae: An automated toolkit for predicting sequencing data
    Article Snippet: Sphae requires sequencing reads in fastq format, either paired-end short reads from Illumina or MGI sequencing platforms or unpaired long reads from Oxford Nanopore sequencing platforms. .. Oxford Nanopore raw sequencing output is in fast5 or pod5 format, which must be basecalled using Guppy ( https://community.nanoporetech.com ) or Dorado ( https://github.com/nanoporetech/dorado ) to convert the reads to fastq format before running this workflow. ..

    Article Title: Hecatomb: an integrated software platform for viral metagenomics
    Article Snippet: .. Hecatomb (RRID: SCR_025002) serves as an end-to-end pipeline by processing raw sequencing reads (single or paired end, long or short reads from Illumina, MGI, PacBio, or Oxford Nanopore platforms) through 4 key modules (Fig. ). ..

    Article Title: Sphae: an automated toolkit for predicting phage therapy candidates from sequencing data
    Article Snippet: Sphae requires sequencing reads in fastq format, either paired-end short reads from Illumina or MGI sequencing platforms or unpaired long reads from Oxford Nanopore sequencing platforms. .. Oxford Nanopore raw sequencing output is in fast5 or pod5 format, which must be basecalled using Guppy or Dorado to convert the reads to fastq format before running this workflow. ..

    Article Title: Transcriptomics data for muscle development in Goats
    Article Snippet: .. Quality control of Oxford Nanopore Technology (ONT) raw sequencing data was conducted based on sequencing quality scores, with a default threshold of Q7. ..

    Article Title: The need for speed: ultra-rapid high-resolution outbreak analysis in a front-line hospital microbiology laboratory
    Article Snippet: .. The Oxford Nanopore Technologies raw sequence read data, basecalled using Dorado v0.6.3, have been deposited in the National Center for Biotechnology Information (NCBI) sequence read archive (SRA, https://www.ncbi.nlm.nih.gov/sra ). ..

    Control:

    Article Title: Transcriptomics data for muscle development in Goats
    Article Snippet: .. Quality control of Oxford Nanopore Technology (ONT) raw sequencing data was conducted based on sequencing quality scores, with a default threshold of Q7. ..



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