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prism v9.3.1  (GraphPad Software Inc)


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    GraphPad Software Inc prism v9.3.1
    Expression of Bos taurus genes in different states of Theileria parva infection of bovine CD4 + T-cells. ( a ) The total number of expressed genes at day 0 (red), day 7 (green) and day 69 (blue). ( b ) Principal component analysis plot showing the first and second principle components; based on variance stabilized transformed counts of all expressed genes. ( c ) The number of significantly upregulated (red) or downregulated (blue) genes at day 7 and day 69, relative to day 0, as determined by DE analysis using DESeq2 (FDR ≤ 0.05 and L2FC |≤ 2|). ( d ) Distribution of all significantly DEGs according to the L2FC and −log(adjusted p -value) at day 7 and day 69, relative to day 0. ( e ) Expression of the top 100 significantly DEGs at day 7 and day 69, relative to day 0, displayed as z-score transformed counts. Created with ComplexHeatmap v2.12.1 and ggplot2 v3.4.2 in R Studio v2023.03.1, Graphpad Prism <t>v9.3.1</t> and BioRender.com.
    Prism V9.3.1, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/complexheatmap+tool/prism+software/pmc11026401-117-12-11
    Average 90 stars, based on 1 article reviews
    prism v9.3.1 - by Bioz Stars, 2026-11
    90/100 stars

    Images

    1) Product Images from "Comparative transcriptional analysis identifies genes associated with the attenuation of Theileria parva infected cells after long-term in vitro culture"

    Article Title: Comparative transcriptional analysis identifies genes associated with the attenuation of Theileria parva infected cells after long-term in vitro culture

    Journal: Scientific Reports

    doi: 10.1038/s41598-024-59197-y

    Expression of Bos taurus genes in different states of Theileria parva infection of bovine CD4 + T-cells. ( a ) The total number of expressed genes at day 0 (red), day 7 (green) and day 69 (blue). ( b ) Principal component analysis plot showing the first and second principle components; based on variance stabilized transformed counts of all expressed genes. ( c ) The number of significantly upregulated (red) or downregulated (blue) genes at day 7 and day 69, relative to day 0, as determined by DE analysis using DESeq2 (FDR ≤ 0.05 and L2FC |≤ 2|). ( d ) Distribution of all significantly DEGs according to the L2FC and −log(adjusted p -value) at day 7 and day 69, relative to day 0. ( e ) Expression of the top 100 significantly DEGs at day 7 and day 69, relative to day 0, displayed as z-score transformed counts. Created with ComplexHeatmap v2.12.1 and ggplot2 v3.4.2 in R Studio v2023.03.1, Graphpad Prism v9.3.1 and BioRender.com.
    Figure Legend Snippet: Expression of Bos taurus genes in different states of Theileria parva infection of bovine CD4 + T-cells. ( a ) The total number of expressed genes at day 0 (red), day 7 (green) and day 69 (blue). ( b ) Principal component analysis plot showing the first and second principle components; based on variance stabilized transformed counts of all expressed genes. ( c ) The number of significantly upregulated (red) or downregulated (blue) genes at day 7 and day 69, relative to day 0, as determined by DE analysis using DESeq2 (FDR ≤ 0.05 and L2FC |≤ 2|). ( d ) Distribution of all significantly DEGs according to the L2FC and −log(adjusted p -value) at day 7 and day 69, relative to day 0. ( e ) Expression of the top 100 significantly DEGs at day 7 and day 69, relative to day 0, displayed as z-score transformed counts. Created with ComplexHeatmap v2.12.1 and ggplot2 v3.4.2 in R Studio v2023.03.1, Graphpad Prism v9.3.1 and BioRender.com.

    Techniques Used: Expressing, Infection, Transformation Assay

    Expression of Theileria parva genes in different states of T. parva infection of bovine CD4 + T-cells. ( a ) The total number of expressed genes at day 7 (green) and day 69 (blue). ( b ) Principal component analysis plot showing the first and second principle components; based on variance stabilized transformed counts of all expressed genes. ( c ) The number of significantly upregulated (red) or downregulated (blue) genes day 69 compared to day 7, as determined by DE analysis using DESeq2 (FDR ≤ 0.05 and L2FC |≤ 2|). ( d ) Distribution of all significantly DEGs according to the L2FC and -log(adjusted p-value) at day 69 compared to day 7. ( e ) Expression of the all significantly DEGs at day 69 compared to day 7, displayed as z-score transformed counts. Created with ComplexHeatmap v2.12.1 and ggplot2 v3.4.2 in R Studio v2023.03.1, Graphpad Prism v9.3.1 and BioRender.com.
    Figure Legend Snippet: Expression of Theileria parva genes in different states of T. parva infection of bovine CD4 + T-cells. ( a ) The total number of expressed genes at day 7 (green) and day 69 (blue). ( b ) Principal component analysis plot showing the first and second principle components; based on variance stabilized transformed counts of all expressed genes. ( c ) The number of significantly upregulated (red) or downregulated (blue) genes day 69 compared to day 7, as determined by DE analysis using DESeq2 (FDR ≤ 0.05 and L2FC |≤ 2|). ( d ) Distribution of all significantly DEGs according to the L2FC and -log(adjusted p-value) at day 69 compared to day 7. ( e ) Expression of the all significantly DEGs at day 69 compared to day 7, displayed as z-score transformed counts. Created with ComplexHeatmap v2.12.1 and ggplot2 v3.4.2 in R Studio v2023.03.1, Graphpad Prism v9.3.1 and BioRender.com.

    Techniques Used: Expressing, Infection, Transformation Assay

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    Article Title: Bromodomain-containing protein 4 knockdown promotes neuronal ferroptosis in a mouse model of subarachnoid hemorrhage
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    Article Title: Neuroserpin alleviates cerebral ischemia-reperfusion injury by suppressing ischemia-induced endoplasmic reticulum stress
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    Article Title: The rise of old villains: the vaccination downfall worldwide.
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    Produced:

    Article Title: Personalisation of Non-surgical Treatment in Peripheral Arterial Disease Using a Multicomponent Exercise Approach
    Article Snippet: .. Statistical analysis: Statistical analyses will be carried out using JASP software, version 0.18.1 (JASP Team, 2023) and the figures produced in GraphPad Prism software, version 8.0.1 (GraphPad Software, San Diego, California). ..



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