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ChemAxon LLC jcsearch
Jcsearch, supplied by ChemAxon LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command-line+serial+interface+program/jcsearch+algorithm/pm16443637-47-7-3
Average 90 stars, based on 1 article reviews
jcsearch - by Bioz Stars, 2026-10
90/100 stars

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Article Title: Computational Analysis and Predictive Cheminformatics Modeling of Small Molecule Inhibitors of Epigenetic Modifiers
Article Snippet: This was done using the jcsearch algorithm of ChemAxon [ ].

Article Title: Using Molecular Features of Xenobiotics to Predict Hepatic Gene Expression Response
Article Snippet: We tested for enrichment of each of the ECFP4s in the true positives or true negatives using Fisher’s Exact test with multiple hypothesis testing correction using the false discovery rate.30 We checked for the presence of the ECFP4 fragments with the largest positive and negative weights using ChemAxon’s “jcsearch” program and generated visualizations of the fragments with ChemAxon’s “mview” program.

Article Title: Methods and systems for populating and searching a drug informatics database
Article Snippet: For example, 1,000 to 10,000 compounds, depending on settings, are placed into a screening table and then subjected to a substructure search via the jcsearch function, which is part of ChemAxon's JChem Web Services package.

Article Title: Discovery of novel Trypanosoma brucei phosphodiesterase B1 inhibitors by virtual screening against the unliganded TbrPDEB1 crystal structure
Article Snippet: The structures then passed through ChemAxon’s Jcsearch (version 5.4.1.1) and those compounds with at least one of the following features were kept for further processing: aromatic rings containing at least one nitrogen atom, conjugated rings with carbonyl or imines, or phenols (Figure S2 in Supporting Information).

Article Title: Computational analysis and In-silico predictive modeling for inhibitors of PhoP regulon in S. typhi on high-throughput screening bioassay dataset.
Article Snippet: The emergence of multidrug resistant salmonella enterica serotype typhi in pandemic proportions throughout the world and therefore there is a necessity to speed up the discovery of novel molecules having different modes of action and also less influenced to the resistance formation that would be used as drug for the treatment of salmonellosis particularly typhoid fever.. The PhoP regulon is well studied and have now been shown to be critical regulator of number of gene expression whose required for intracellular survival of S.enterica and pathophysiology of disease like typhoid.. The evident roles of two component PhoP/PhoQ-regulated products in salmonella virulence have motivated attempts to target them as therapeutically.

Article Title: Prediction of anticancer molecules using hybrid model developed on molecules screened against NCI-60 cancer cell lines
Article Snippet: Structures were search using jcsearch module of Chemaxon with substructure search option.

Article Title: Methods and systems for populating and searching a drug informatics database
Article Snippet: These functions (jcsearch and jcman) are command-line interfaces to ChemAxon Java programs and these functions connect with MySQL via the JDBC Connector/J.

Generated:

Article Title: Computational Analysis and In silico Predictive Modeling for Inhibitors of PhoP Regulon in S. typhi on High-Throughput Screening Bioassay Dataset.
Article Snippet: There is emergence of multidrug-resistant Salmonella enterica serotype typhi in pandemic proportions throughout the world, and therefore, there is a necessity to speed up the discovery of novel molecules having different modes of action and also less influenced by the resistance formation that would be used as drug for the treatment of salmonellosis particularly typhoid fever.. The PhoP regulon is well studied and has now been shown to be a critical regulator of number of gene expressions which are required for intracellular survival of S. enterica and pathophysiology of disease like typhoid.. The evident roles of twocomponent PhoP-/PhoQ-regulated products in salmonella virulence have motivated attempts to target them therapeutically.



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