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10X Genomics command line
Command Line, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/command+line+spaceranger%E2%80%99%E2%80%99+tool/pmc12305206-121-8-17
Average 86 stars, based on 1 article reviews
command line - by Bioz Stars, 2026-11
86/100 stars

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Related Articles

other:

Article Title: Spatial transcriptomics unveils estrogen-modulated immune responses and structural alterations in the ectocervical mucosa of depot medroxyprogesterone acetate users
Article Snippet: Raw reads were processed utilizing the spaceranger command line tool (version 1.2.0, 10x Genomics) and mapped to the human reference genome (Homo sapiens, GRCh38-2020-A).

Article Title: B cell expansion hinders the stroma-epithelium regenerative cross talk during mucosal healing.
Article Snippet: Amurine colon sample fromd14was analyzed by using spatial transcriptomics.

Article Title: Spatial transcriptomics and in situ immune cell profiling of the host ectocervical landscape of HIV infected Kenyan sex working women
Article Snippet: The acquired raw reads were processed by the spaceranger command line tool (v.2.1.0, 10x Genomics) and mapped to the human reference genome ( Homo sapiens , GRCh38-2020-A).

Article Title: Spatial transcriptomics and in situ immune cell profiling of the host ectocervical landscape of HIV infected Kenyan sex working women.
Article Snippet: The acquired raw reads were processed by the spaceranger command line tool (v.2.1.0, 10x Genomics) and mapped to the human reference genome (Homo sapiens, GRCh38-2020-A).

Article Title: Protocol for conducting a single-cell sequencing assay for transposase-accessible chromatin analysis
Article Snippet: Note: For additional options, you can use the command line: `${cellranger_atac} count -h` or visit the website: https://support.10xgenomics.com/single-cell -atac/software/pipelines/latest/using/count.

Sequencing:

Article Title: The spatial landscape of cancer hallmarks reveals patterns of tumor ecological dynamics and drug sensitivity.
Article Snippet: In brief Sibai et al. investigate the spatial organization of cancer hallmarks in primary untreated tumors, revealing compartment-specific contributions of cancer cells and the tumor microenvironment to hallmark activity.. This approach highlights how genomic and spatial factors influence hallmark specialization and interdependencies, providing insights into tumor ecology and drug sensitivity that could inform therapeutic strategies.



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