picard tool 'markduplicates (Broad Institute Inc)
90
Structured Review
Broad Institute Inc
picard tool 'markduplicates
Picard Tool 'Markduplicates, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line+tool+markduplicates/picard+markduplicates+tool/pm30523328-351-3-4
Average 90 stars, based on 1 article reviews
Picard Tool 'Markduplicates, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line+tool+markduplicates/picard+markduplicates+tool/pm30523328-351-3-4
Average 90 stars, based on 1 article reviews
picard tool 'markduplicates - by Bioz Stars,
2026-11
90/100 stars
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other:Article Title: Noninvasive early identification of durable clinical benefit from immune checkpoint inhibition: a prospective multicenter study (NCT04566432). Article Snippet: Somatic single nucleotide variants were determined by MuTect and NChot (Geneplus-Beijing, inhouse). Article Title: Genomic Monitoring of a Reintroduced Butterfly Uncovers Contrasting Founder Lineage Survival Article Snippet: We used Picard Tools MarkDuplicates (Broad Institute ) to identify and then remove any duplicate reads. Article Title: Innovative thiosemicarbazones that induce multi-modal mechanisms to down-regulate estrogen-, progesterone-, androgen- and prolactin-receptors in breast cancer. Article Snippet: Duplicated reads were located and tagged using the Picard tool, MarkDuplicates (version 1.138; Broad Institute, USA). Article Title: Single variant, yet “double trouble”: TSC and KBG syndrome because of a large de novo inversion Article Snippet: After quality check with FASTQC (Andrews S., 2010) and trimming with Trimmomatic v0.35 (Bolger et al, 2014), reads were aligned along the human reference genome GRCh37 with BWA-MEM v0.7.15 (Li, 2013), sorted by coordinates using Samtools v1.3.1 (Li et al, 2009) and marked for duplicates using MarkDuplicates Picard tool (Picard Tools - By Broad Institute). Article Title: Circulating Tumor DNA Detection for Recurrence Monitoring of Stage I Non-Small Cell Lung Cancer Treated With Microwave Ablation. Article Snippet: Duplicates were removed with Picard's MarkDuplicates tool (version 4.0; Broad Institute). Polymerase Chain Reaction:Article Title: Plasmodium ARK2 and EB1 drive unconventional spindle dynamics, during chromosome segregation in sexual transmission stages. Article Snippet: .. Using Samtools, only properly paired reads with mapping quality 40 or higher were retained and readsmarked as PCR duplicates were removed by Article Title: PfMORC protein regulates chromatin accessibility and transcriptional repression in the human malaria parasite, P. falciparum Article Snippet: .. Using Samtools (version 1.11), only properly paired reads with mapping quality 40 or higher were retained, and reads marked as PCR duplicates were removed by Article Title: Predicting gene expression state and prioritizing putative enhancers using 5hmC signal Article Snippet: .. PCR duplicates were identified and removed using |