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combimatrix arrays  (CombiMatrix)

 
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    CombiMatrix combimatrix arrays
    Combimatrix Arrays, supplied by CombiMatrix, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/combimatrix+arrays/combimatrix+microarray/pmc06127634-160-4-4
    Average 90 stars, based on 1 article reviews
    combimatrix arrays - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Infection:

    Article Title: General and species-specific transcriptional responses to downy mildew infection in a susceptible ( Vitis vinifera ) and a resistant ( V. riparia ) grapevine species
    Article Snippet: .. Early transcriptional changes associated with P. viticola infection in susceptible V. vinifera and resistant V. riparia plants were analyzed using the Combimatrix microarray platform. ..

    Microarray:

    Article Title: General and species-specific transcriptional responses to downy mildew infection in a susceptible ( Vitis vinifera ) and a resistant ( V. riparia ) grapevine species
    Article Snippet: .. Early transcriptional changes associated with P. viticola infection in susceptible V. vinifera and resistant V. riparia plants were analyzed using the Combimatrix microarray platform. ..

    Article Title: Genome-wide analysis of the GDSL esterase/lipase family genes in Physcomitrium patens and the involvement of GELP31 in spore germination.
    Article Snippet: In plants, the ability to produce hydrophobic substances that would provide protection from dehydration was required for the transition to land.. This genome-wide investigation outlines the evolution of GDSL-type esterase/lipase (GELP) proteins in the moss Physcomitrium patens and suggests possible functions of some genes.. GELP proteins play roles in the formation of hydrophobic polymers such as cutin and suberin that protect against dehydration and pathogen attack.

    Article Title: Multiplexed Electrochemical Detection of Yersinia Pestis and Staphylococcal Enterotoxin B using an Antibody Microarray
    Article Snippet: .. Herein we describe the first use of the CombiMatrix antibody microarray designed towards the biological pathogens Yersinia pestis , Bacillus anthracis , and the bacterial toxin staphylococcal enterotoxin B (SEB). ..

    Article Title: Multiplexed Electrochemical Detection of Yersinia Pestis and Staphylococcal Enterotoxin B using an Antibody Microarray
    Article Snippet: Combined with the lack of “positive” results on the non-specific loci under these conditions, these results clearly demonstrate the multiplex capabilities of the CombiMatrix antibody microarray and the signal-enhancing properties of SABS. .. The limits of detection (lowest positive concentration) for SEB attained with the CombiMatrix antibody microarray compare favorably with other commercial detection systems and laboratory-based assays. .. Enzyme-linked immunosorbent assays (ELISA) have been shown to detect as low as 0.5 ng/mL SEB [ ].

    Article Title: Multiplexed Electrochemical Detection of Yersinia Pestis and Staphylococcal Enterotoxin B using an Antibody Microarray
    Article Snippet: .. The CombiMatrix antibody microarray is a versatile, sensitive detection platform based on the generation and transduction of electrochemical signals following antigen binding to surface antibodies. ..

    Article Title: Assessing the Prevalence of Astroviruses in Water Environments: A Systematic Review and Meta-analysis
    Article Snippet: .. No data on AstV prevalence in water matrices 27 Kim, 2012 Simultaneous detection of major enteric viruses using a combimatrix microarray. ..

    Article Title: Multiplexed Electrochemical Detection of Yersinia Pestis and Staphylococcal Enterotoxin B using an Antibody Microarray
    Article Snippet: .. Combined with the lack of “positive” results on the non-specific loci under these conditions, these results clearly demonstrate the multiplex capabilities of the CombiMatrix antibody microarray and the signal-enhancing properties of SABS. .. The limits of detection (lowest positive concentration) for SEB attained with the CombiMatrix antibody microarray compare favorably with other commercial detection systems and laboratory-based assays.

    RNA Sequencing:

    Article Title: Cellulose synthase-like D movement in the plasma membrane requires enzymatic activity.
    Article Snippet: .. Results from transcriptional profiling of P. patens developmental stages using a CombiMatrix array (Hiss et al., 2014; Wolf et al., 2010) or RNA-seq (Perroud et al., 2018) were generally consistent, although CSLD2 transcripts were not detected in the RNA-seq analysis. (C) Sequence alignment of PpCESA10 and PpCSLDwith Zn-binding domain (blue), transmembrane helices (gray), plant conserved region (aqua), classspecific region (pink), interfacial helix (orange), and conserved D, D, D, QxxRWmotifs (red) highlighted based on homology with PttCESA8 (Purushotham et al., 2020). ..

    Sequencing:

    Article Title: Cellulose synthase-like D movement in the plasma membrane requires enzymatic activity.
    Article Snippet: .. Results from transcriptional profiling of P. patens developmental stages using a CombiMatrix array (Hiss et al., 2014; Wolf et al., 2010) or RNA-seq (Perroud et al., 2018) were generally consistent, although CSLD2 transcripts were not detected in the RNA-seq analysis. (C) Sequence alignment of PpCESA10 and PpCSLDwith Zn-binding domain (blue), transmembrane helices (gray), plant conserved region (aqua), classspecific region (pink), interfacial helix (orange), and conserved D, D, D, QxxRWmotifs (red) highlighted based on homology with PttCESA8 (Purushotham et al., 2020). ..

    Expressing:

    Article Title: Genome-wide analysis of the GDSL esterase/lipase family genes in Physcomitrium patens and the involvement of GELP31 in spore germination.
    Article Snippet: In plants, the ability to produce hydrophobic substances that would provide protection from dehydration was required for the transition to land.. This genome-wide investigation outlines the evolution of GDSL-type esterase/lipase (GELP) proteins in the moss Physcomitrium patens and suggests possible functions of some genes.. GELP proteins play roles in the formation of hydrophobic polymers such as cutin and suberin that protect against dehydration and pathogen attack.

    RNA sequencing:

    Article Title: Genome-wide analysis of the GDSL esterase/lipase family genes in Physcomitrium patens and the involvement of GELP31 in spore germination.
    Article Snippet: In plants, the ability to produce hydrophobic substances that would provide protection from dehydration was required for the transition to land.. This genome-wide investigation outlines the evolution of GDSL-type esterase/lipase (GELP) proteins in the moss Physcomitrium patens and suggests possible functions of some genes.. GELP proteins play roles in the formation of hydrophobic polymers such as cutin and suberin that protect against dehydration and pathogen attack.

    Concentration Assay:

    Article Title: Multiplexed Electrochemical Detection of Yersinia Pestis and Staphylococcal Enterotoxin B using an Antibody Microarray
    Article Snippet: Combined with the lack of “positive” results on the non-specific loci under these conditions, these results clearly demonstrate the multiplex capabilities of the CombiMatrix antibody microarray and the signal-enhancing properties of SABS. .. The limits of detection (lowest positive concentration) for SEB attained with the CombiMatrix antibody microarray compare favorably with other commercial detection systems and laboratory-based assays. .. Enzyme-linked immunosorbent assays (ELISA) have been shown to detect as low as 0.5 ng/mL SEB [ ].

    Transduction:

    Article Title: Multiplexed Electrochemical Detection of Yersinia Pestis and Staphylococcal Enterotoxin B using an Antibody Microarray
    Article Snippet: .. The CombiMatrix antibody microarray is a versatile, sensitive detection platform based on the generation and transduction of electrochemical signals following antigen binding to surface antibodies. ..

    Binding Assay:

    Article Title: Multiplexed Electrochemical Detection of Yersinia Pestis and Staphylococcal Enterotoxin B using an Antibody Microarray
    Article Snippet: .. The CombiMatrix antibody microarray is a versatile, sensitive detection platform based on the generation and transduction of electrochemical signals following antigen binding to surface antibodies. ..

    Multiplex Assay:

    Article Title: Multiplexed Electrochemical Detection of Yersinia Pestis and Staphylococcal Enterotoxin B using an Antibody Microarray
    Article Snippet: .. Combined with the lack of “positive” results on the non-specific loci under these conditions, these results clearly demonstrate the multiplex capabilities of the CombiMatrix antibody microarray and the signal-enhancing properties of SABS. .. The limits of detection (lowest positive concentration) for SEB attained with the CombiMatrix antibody microarray compare favorably with other commercial detection systems and laboratory-based assays.



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    Image Search Results


    Architecture of the RiceATM platform. Step 1: Eight agronomic traits are represented in the RiceATM web server. The user can select an interesting trait and identify the associated miRNAs. Step 2: After selecting the agronomic trait, the user must fill in the ‘High cumulative percentage’ and “Low cumulative percentage” fields to identify the high- and low-quantity groups. The miRNA expression data on these two groups are selected for analysis. Step 3: In the microarray data pretreatment step, the user can select quantile normalization and data adjustment to normalize the microarray data. Step 4: To identify the miRNAs associated with the agronomic trait in the two groups of cultivars, RiceATM supports Student’s t -tests or ANOVAs. Step 5: Finally, the user can select the miRanda or psRNATarget algorithm to predict the target genes of the associated miRNAs.

    Journal: Database: The Journal of Biological Databases and Curation

    Article Title: RiceATM: a platform for identifying the association between rice agronomic traits and miRNA expression

    doi: 10.1093/database/baw151

    Figure Lengend Snippet: Architecture of the RiceATM platform. Step 1: Eight agronomic traits are represented in the RiceATM web server. The user can select an interesting trait and identify the associated miRNAs. Step 2: After selecting the agronomic trait, the user must fill in the ‘High cumulative percentage’ and “Low cumulative percentage” fields to identify the high- and low-quantity groups. The miRNA expression data on these two groups are selected for analysis. Step 3: In the microarray data pretreatment step, the user can select quantile normalization and data adjustment to normalize the microarray data. Step 4: To identify the miRNAs associated with the agronomic trait in the two groups of cultivars, RiceATM supports Student’s t -tests or ANOVAs. Step 5: Finally, the user can select the miRanda or psRNATarget algorithm to predict the target genes of the associated miRNAs.

    Article Snippet: The mature miRNA sequences and six control probes (four positive and two negative) were used to produce the customized rice miRNA microarray (Combimatrix Custom Array 4 × 2 K, CA, USA).

    Techniques: Expressing, Microarray

    Example of browsing the RiceATM platform. (A) Eight agronomic traits affecting yield are represented in RiceATM, including the heading date, plant height, panicle number, panicle length, panicle weight, spikelet number, seed-set %, and 1000-seed weight. Here, we select ‘Heading Date’ as a demonstration. (B) RiceATM includes 187 rice cultivars: 155 japonica and 32 indica. The user can select total (japonica plus indica), japonica or indica cultivars to analyse by checking the ‘Variety’ box. In this example, we select the k-means clustering algorithm to select the high and low heading date groups for the total cultivars. (C) In the data pretreatment step, we use quantile normalization and then clip the minimum value at 800 to normalize the microarray data. (D) Differentially expressed miRNAs are evaluated by ANOVA and then subjected to target gene prediction by the psRNATarget algorithm. Thus, RiceATM shows the regulatory miRNA network. Large orange circles, miRNAs with high expression in the high-quantity group; large green circles, miRNAs with high expression in the low-quantity group; small blue circles, targeted mRNAs.

    Journal: Database: The Journal of Biological Databases and Curation

    Article Title: RiceATM: a platform for identifying the association between rice agronomic traits and miRNA expression

    doi: 10.1093/database/baw151

    Figure Lengend Snippet: Example of browsing the RiceATM platform. (A) Eight agronomic traits affecting yield are represented in RiceATM, including the heading date, plant height, panicle number, panicle length, panicle weight, spikelet number, seed-set %, and 1000-seed weight. Here, we select ‘Heading Date’ as a demonstration. (B) RiceATM includes 187 rice cultivars: 155 japonica and 32 indica. The user can select total (japonica plus indica), japonica or indica cultivars to analyse by checking the ‘Variety’ box. In this example, we select the k-means clustering algorithm to select the high and low heading date groups for the total cultivars. (C) In the data pretreatment step, we use quantile normalization and then clip the minimum value at 800 to normalize the microarray data. (D) Differentially expressed miRNAs are evaluated by ANOVA and then subjected to target gene prediction by the psRNATarget algorithm. Thus, RiceATM shows the regulatory miRNA network. Large orange circles, miRNAs with high expression in the high-quantity group; large green circles, miRNAs with high expression in the low-quantity group; small blue circles, targeted mRNAs.

    Article Snippet: The mature miRNA sequences and six control probes (four positive and two negative) were used to produce the customized rice miRNA microarray (Combimatrix Custom Array 4 × 2 K, CA, USA).

    Techniques: Microarray, Expressing

    Expression trend of candidate miRNAs in the early and late heading date groups of rice cultivars. Four miRNA derived from RiceATM analysis and associated with heading date were subjected to a real-time PCR assay. Early, early heading date group, n = 4; Late, late heading date group, n = 4. Actin served as the internal control. (A) miR172d-3p; (B) miR818c; (C) miR820c and (D) miR399f. * P < 0.05, compared with the early group.

    Journal: Database: The Journal of Biological Databases and Curation

    Article Title: RiceATM: a platform for identifying the association between rice agronomic traits and miRNA expression

    doi: 10.1093/database/baw151

    Figure Lengend Snippet: Expression trend of candidate miRNAs in the early and late heading date groups of rice cultivars. Four miRNA derived from RiceATM analysis and associated with heading date were subjected to a real-time PCR assay. Early, early heading date group, n = 4; Late, late heading date group, n = 4. Actin served as the internal control. (A) miR172d-3p; (B) miR818c; (C) miR820c and (D) miR399f. * P < 0.05, compared with the early group.

    Article Snippet: The mature miRNA sequences and six control probes (four positive and two negative) were used to produce the customized rice miRNA microarray (Combimatrix Custom Array 4 × 2 K, CA, USA).

    Techniques: Expressing, Derivative Assay, Real-time Polymerase Chain Reaction, Control