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CodonCode corporation phred/phrap software
Phred/Phrap Software, supplied by CodonCode corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/codoncode+phred/phred+phrap+software/us07220570-187-24-26
Average 90 stars, based on 1 article reviews
phred/phrap software - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Software:

Article Title: Complete Genome Sequence of Desulfurococcus fermentans, a Hyperthermophilic Cellulolytic Crenarchaeon Isolated from a Freshwater Hot Spring in Kamchatka, Russia
Article Snippet: The Phred/Phrap/Consed software package (CodonCode Corporation, Dedham, MA) was used for sequence assembly and quality assessment in the finishing process as follows.

Article Title: Analysis of strain-specific genes in glutamic acid-producing Corynebacterium glutamicum ssp. lactofermentum AJ 1511.
Article Snippet: Approximately 55,000 samples from the pUC118 library, which in aggregate length corresponds to more than an 8-fold coverage of the size of the genome, were analyzed and sequences were assembled by Phred/Phrap software (CodonCode, MA, USA).

Article Title: Genetic variations of immunoregulatory genes associated with Rasmussen syndrome.
Article Snippet: National Epilepsy Center, Shizuoka Institute of Epilepsy and Neurological Disorder, 886 Urushiyama, oi-ward, Shizuoka, Japan Department of Pediatrics, Gifu University School of Medicine, Yanagido, Gifu, Japan Department of Pediatrics, Nishi-Niigata Chuo National Hospital, Masago, West-ward, Niigata, Japan Department of Neurology, Japanese Red Cross Shizuoka Hospital, Aoi-ward, Oute-machi, Shizuoka, Japan Department of Pediatrics, Gifu Prefectural General Medical Center, Nagamori, Gifu, Japan

Article Title: Complete genome sequence of Mycobacterium tuberculosis K from a Korean high school outbreak, belonging to the Beijing family.
Article Snippet: The contigs and the Sanger sequence reads for the gap closure were combined via manual curation using Phred/Phrap/ Consed and CodonCode Aligner 3.7.1 (CodonCode Corp., Centerville, USA).

Article Title: Variation in Arabidopsis flowering time associated with cis -regulatory variation in CONSTANS
Article Snippet: All sequences were assembled using Phred/Phrap (CodonCode, Dedham, MA) and aligned against the Col-0 CO sequence using BioLign2.0.9 (Tom Hall, Ibis Therapeutics, Carlsbad, CA).

Article Title: Three Infectious Viral Species Lying in Wait in the Banana Genome
Article Snippet: BACs 73B22 and 17D14 were assembled using the Phred/Phrap/Consed software package (CodonCode Corporation), whereas Arachne assembler was used for BAC 68C24.

Article Title: Three Infectious Viral Species Lying in Wait in the Banana Genome
Article Snippet: BACs 73B22 and 17D14 were assembled using the Phred/Phrap/Consed software package (CodonCode Corporation), whereas Arachne assembler was used for BAC 68C24.

Article Title: Occurrence and diversity of Sarcocystidae protozoa in muscle and brain tissues of bats from São Paulo state, Brazil
Article Snippet: The contig assembly of the sequences obtained was evaluated with Phred/Phrap/Consed from CodonCode Aligner software ( ; ).

BAC Assay:

Article Title: Complete Genome Sequence of Desulfurococcus fermentans, a Hyperthermophilic Cellulolytic Crenarchaeon Isolated from a Freshwater Hot Spring in Kamchatka, Russia
Article Snippet: The Phred/Phrap/Consed software package (CodonCode Corporation, Dedham, MA) was used for sequence assembly and quality assessment in the finishing process as follows.

Article Title: Analysis of strain-specific genes in glutamic acid-producing Corynebacterium glutamicum ssp. lactofermentum AJ 1511.
Article Snippet: Approximately 55,000 samples from the pUC118 library, which in aggregate length corresponds to more than an 8-fold coverage of the size of the genome, were analyzed and sequences were assembled by Phred/Phrap software (CodonCode, MA, USA).

Article Title: Genetic variations of immunoregulatory genes associated with Rasmussen syndrome.
Article Snippet: National Epilepsy Center, Shizuoka Institute of Epilepsy and Neurological Disorder, 886 Urushiyama, oi-ward, Shizuoka, Japan Department of Pediatrics, Gifu University School of Medicine, Yanagido, Gifu, Japan Department of Pediatrics, Nishi-Niigata Chuo National Hospital, Masago, West-ward, Niigata, Japan Department of Neurology, Japanese Red Cross Shizuoka Hospital, Aoi-ward, Oute-machi, Shizuoka, Japan Department of Pediatrics, Gifu Prefectural General Medical Center, Nagamori, Gifu, Japan

Article Title: Complete genome sequence of Mycobacterium tuberculosis K from a Korean high school outbreak, belonging to the Beijing family.
Article Snippet: The contigs and the Sanger sequence reads for the gap closure were combined via manual curation using Phred/Phrap/ Consed and CodonCode Aligner 3.7.1 (CodonCode Corp., Centerville, USA).

Article Title: Variation in Arabidopsis flowering time associated with cis -regulatory variation in CONSTANS
Article Snippet: All sequences were assembled using Phred/Phrap (CodonCode, Dedham, MA) and aligned against the Col-0 CO sequence using BioLign2.0.9 (Tom Hall, Ibis Therapeutics, Carlsbad, CA).

Article Title: Three Infectious Viral Species Lying in Wait in the Banana Genome
Article Snippet: BACs 73B22 and 17D14 were assembled using the Phred/Phrap/Consed software package (CodonCode Corporation), whereas Arachne assembler was used for BAC 68C24.

Article Title: Three Infectious Viral Species Lying in Wait in the Banana Genome
Article Snippet: BACs 73B22 and 17D14 were assembled using the Phred/Phrap/Consed software package (CodonCode Corporation), whereas Arachne assembler was used for BAC 68C24.

Article Title: Occurrence and diversity of Sarcocystidae protozoa in muscle and brain tissues of bats from São Paulo state, Brazil
Article Snippet: The contig assembly of the sequences obtained was evaluated with Phred/Phrap/Consed from CodonCode Aligner software ( ; ).

Sequencing:

Article Title: Complete Genome Sequence of Desulfurococcus fermentans, a Hyperthermophilic Cellulolytic Crenarchaeon Isolated from a Freshwater Hot Spring in Kamchatka, Russia
Article Snippet: The Phred/Phrap/Consed software package (CodonCode Corporation, Dedham, MA) was used for sequence assembly and quality assessment in the finishing process as follows.

Article Title: Analysis of strain-specific genes in glutamic acid-producing Corynebacterium glutamicum ssp. lactofermentum AJ 1511.
Article Snippet: Approximately 55,000 samples from the pUC118 library, which in aggregate length corresponds to more than an 8-fold coverage of the size of the genome, were analyzed and sequences were assembled by Phred/Phrap software (CodonCode, MA, USA).

Article Title: Genetic variations of immunoregulatory genes associated with Rasmussen syndrome.
Article Snippet: National Epilepsy Center, Shizuoka Institute of Epilepsy and Neurological Disorder, 886 Urushiyama, oi-ward, Shizuoka, Japan Department of Pediatrics, Gifu University School of Medicine, Yanagido, Gifu, Japan Department of Pediatrics, Nishi-Niigata Chuo National Hospital, Masago, West-ward, Niigata, Japan Department of Neurology, Japanese Red Cross Shizuoka Hospital, Aoi-ward, Oute-machi, Shizuoka, Japan Department of Pediatrics, Gifu Prefectural General Medical Center, Nagamori, Gifu, Japan

Article Title: Complete genome sequence of Mycobacterium tuberculosis K from a Korean high school outbreak, belonging to the Beijing family.
Article Snippet: The contigs and the Sanger sequence reads for the gap closure were combined via manual curation using Phred/Phrap/ Consed and CodonCode Aligner 3.7.1 (CodonCode Corp., Centerville, USA).

Article Title: Variation in Arabidopsis flowering time associated with cis -regulatory variation in CONSTANS
Article Snippet: All sequences were assembled using Phred/Phrap (CodonCode, Dedham, MA) and aligned against the Col-0 CO sequence using BioLign2.0.9 (Tom Hall, Ibis Therapeutics, Carlsbad, CA).

Article Title: Three Infectious Viral Species Lying in Wait in the Banana Genome
Article Snippet: BACs 73B22 and 17D14 were assembled using the Phred/Phrap/Consed software package (CodonCode Corporation), whereas Arachne assembler was used for BAC 68C24.

Article Title: Three Infectious Viral Species Lying in Wait in the Banana Genome
Article Snippet: BACs 73B22 and 17D14 were assembled using the Phred/Phrap/Consed software package (CodonCode Corporation), whereas Arachne assembler was used for BAC 68C24.

Article Title: Occurrence and diversity of Sarcocystidae protozoa in muscle and brain tissues of bats from São Paulo state, Brazil
Article Snippet: The contig assembly of the sequences obtained was evaluated with Phred/Phrap/Consed from CodonCode Aligner software ( ; ).



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