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CodonCode corporation phred base calling
Phred Base Calling, supplied by CodonCode corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/codoncode+phred/phred+base+calling/pm19564514-61-5-0
Average 90 stars, based on 1 article reviews
phred base calling - by Bioz Stars, 2026-09
90/100 stars

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Article Title: Nuclear and mitochondrial genes for inferring Trichuris phylogeny.
Article Snippet: Nucleotide sequences of the triose phosphate isomerase (TPI) gene (624 bp) and mitochondrial cytochrome b (cob) gene (520 bp) were obtained by PCR and evaluated for utility in inferring the phylogenetic relationships among Trichuris species.. Published sequences of one other nuclear gene (18S or SSU rRNA, 1816–1846 bp) and one additional mitochondrial (mtDNA) gene (cytochrome oxidase 1, cox1, 342 bp) were also analyzed.. Maximum likelihood and Bayesian inference methods were used to infer phylogenies for each gene separately but also for the combined mitochondrial data (two genes), the combined nuclear data (two genes), and the total evidence (four gene) dataset.

Article Title: A molecular phylogeny of the Rhigonematomorpha De Ley & Blaxter, 2002 as inferred from SSU and LSU rDNA sequences
Article Snippet: A molecular hypothesis of the Infraorder Rhigonematomorpha is presented.. The phylogeny recovered using combined SSU and LSU markers suggests that the Rhigonematomorpha is nested within a larger clade that includes Ascaridomorpha, Spiruromorpha and Oxyuridomorpha and is strongly supported by maximum likelihood (ML) bootstrap support values (BS) and Bayesian posterior probabilities (BPP).. SSU and LSU ML and Bayesian analyses recovered Rhigonematomorpha as a paraphyletic clade.

Article Title: Diversity of Sarcocystis spp shed by opossums in Brazil inferred with phylogenetic analysis of DNA coding ITS1, cytochrome B, and surface antigens.
Article Snippet: New alleles of sag2, sag3, and sag4 of Sarcocystis shed by opossums.. Phylogeny of Sarcocystis shed by opossums based on Cytochrome B and ITS1.. Differences between Sarcocystis shed by opossums in Brazil and reference strains of S. falcatula and S. neurona. a r t i c l e i n f o

Article Title: Morphological and molecular characterisation of Aporcelinus zapotitlanensis sp. n. (Dorylaimida: Aporcelaimidae) from central Mexico
Article Snippet: Morphological and molecular characterisation of Aporcelinus zapotitlanensis sp. n. (Dorylaimida: Aporcelaimidae) from central Mexico Hugo H. MEJÍA-MADRID 1,∗ and Reyes PEÑA-SANTIAGO 2 1 Grupo de Ecología y Sistemática de Nemátodos, Departamento de Ecología y Recursos Naturales, Facultad de Ciencias, UNAM, Ciudad de México, C.P.. 04510, Mexico 2 Departamento de Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Campus ‘Las Lagunillas’ s/n, Edificio B3, 23071 Jaén, Spain

Article Title: Sensitivity of Ribosomal RNA Character Sampling in the Phylogeny of Rhabditida
Article Snippet: CodonCode Aligner (5.0.2) and Phred base calling were used in assembly of contigs, and polymorphisms were evaluated as described previously ( Nadler et al., 2006b ).

Article Title: Evidence of heterozygosity and recombinant alleles in single cysts of Giardia duodenalis
Article Snippet: Sequences were assembled and the contig was formed using the phred base-calling and phrap assembly tools, which are available in the Codoncode aligner suite, v.4.2.1. (Codoncode Corp. Dedham, MA, USA).

Article Title: Occurrence and molecular characterization of Cryptosporidium spp. isolated from domestic animals in a rural area surrounding Atlantic dry forest fragments in Teodoro Sampaio municipality, State of São Paulo, Brazil.
Article Snippet: The sequences were assembled and the contig formed with the phred-base-calling and the phrap-assembly tool available in the suite Codoncode aligner v.1.5.2. (Codoncode Corp. Dedham, MA, USA).

Article Title: A Survey of Neospora caninum and Toxoplasma gondii Infection in Urban Rodents from Brazil
Article Snippet: Toxoplasma gondii is a protozoan parasite that infects humans and other warm-blooded animals; it uses feral and domestic cats as the definitive hosts.. Neospora caninum is a protozoan parasite of animals whose life cycle is very similar to T. gondii but uses canids as definitive hosts.. Small rodents play an important role in the life cycle of T. gondii, and a few findings indicated that they may be natural intermediate hosts for N. caninum.



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