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expression plasmid sino biological  (Sino Biological)


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    Structured Review

    Sino Biological expression plasmid sino biological
    Expression Plasmid Sino Biological, supplied by Sino Biological, used in various techniques. Bioz Stars score: 93/100, based on 9 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/codon/Human+coronavirus(HCoV-229E)+Spike+Gene+ORF+cDNA+clone+expression+plasmid(Codon+Optimized)%2C+C-Flag+tag/pmc07687490__mmc2-357-155-157
    Average 93 stars, based on 9 article reviews
    expression plasmid sino biological - by Bioz Stars, 2026-10
    93/100 stars

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    Related Articles

    Binding Assay:

    Article Title: Post-transfusion activation of coagulation pathways during severe COVID-19 correlates with COVID-19 convalescent plasma antibody profiles
    Article Snippet: .. To quantify the levels of IgG binding to various coronavirus spike proteins, 293T cells (ATTC, CRL-3216) were transfected with SARS-CoV-2 (Sino Biological, VG40589-CF) (GenBank YP_009724390.1), OC43 (Sino Biological, VG40607-CF) (GenBank AVR40344.1), or 229E (Sino Biological, VG40605-CF) (GenBank APT69883.1) spike protein expression vectors. ..

    Article Title: Post-transfusion activation of coagulation pathways during severe COVID-19 correlates with COVID-19 convalescent plasma antibody profiles
    Article Snippet: .. To quantify the levels of IgG binding to various coronavirus spike proteins, 293T cells (ATTC, CRL-3216) were transfected with SARS-CoV-2 (Sino Biological, VG40589-CF) (GenBank YP_009724390.1), OC43 (Sino Biological, VG40607-CF) (GenBank AVR40344.1), or 229E (Sino Biological, VG40605-CF) (GenBank APT69883.1) spike protein expression vectors. ..

    Transfection:

    Article Title: Post-transfusion activation of coagulation pathways during severe COVID-19 correlates with COVID-19 convalescent plasma antibody profiles
    Article Snippet: .. To quantify the levels of IgG binding to various coronavirus spike proteins, 293T cells (ATTC, CRL-3216) were transfected with SARS-CoV-2 (Sino Biological, VG40589-CF) (GenBank YP_009724390.1), OC43 (Sino Biological, VG40607-CF) (GenBank AVR40344.1), or 229E (Sino Biological, VG40605-CF) (GenBank APT69883.1) spike protein expression vectors. ..

    Article Title: Post-transfusion activation of coagulation pathways during severe COVID-19 correlates with COVID-19 convalescent plasma antibody profiles
    Article Snippet: .. To quantify the levels of IgG binding to various coronavirus spike proteins, 293T cells (ATTC, CRL-3216) were transfected with SARS-CoV-2 (Sino Biological, VG40589-CF) (GenBank YP_009724390.1), OC43 (Sino Biological, VG40607-CF) (GenBank AVR40344.1), or 229E (Sino Biological, VG40605-CF) (GenBank APT69883.1) spike protein expression vectors. ..

    Expressing:

    Article Title: Post-transfusion activation of coagulation pathways during severe COVID-19 correlates with COVID-19 convalescent plasma antibody profiles
    Article Snippet: .. To quantify the levels of IgG binding to various coronavirus spike proteins, 293T cells (ATTC, CRL-3216) were transfected with SARS-CoV-2 (Sino Biological, VG40589-CF) (GenBank YP_009724390.1), OC43 (Sino Biological, VG40607-CF) (GenBank AVR40344.1), or 229E (Sino Biological, VG40605-CF) (GenBank APT69883.1) spike protein expression vectors. ..

    Article Title: Post-transfusion activation of coagulation pathways during severe COVID-19 correlates with COVID-19 convalescent plasma antibody profiles
    Article Snippet: .. To quantify the levels of IgG binding to various coronavirus spike proteins, 293T cells (ATTC, CRL-3216) were transfected with SARS-CoV-2 (Sino Biological, VG40589-CF) (GenBank YP_009724390.1), OC43 (Sino Biological, VG40607-CF) (GenBank AVR40344.1), or 229E (Sino Biological, VG40605-CF) (GenBank APT69883.1) spike protein expression vectors. ..

    other:

    Article Title: Differences in syncytia formation by SARS-CoV-2 variants modify host chromatin accessibility and cellular senescence via TP53
    Article Snippet: The pcDNA3.1-puro empty vector was cloned by replacing the coding sequence of pcDNA3.1-puro Nodamura B2 (Addgene #17228) with the pcDNA3.1(+) multiple cloning site.

    Article Title: Differences in syncytia formation by SARS-CoV-2 variants modify host chromatin accessibility and cellular senescence via TP53.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Nutlin-3a Selleckchem S8059 Imatinib Sigma SML1027-10MG Berzosertib Selleckchem S7102 KU-55933 Selleckchem S1092 Temuterkib Selleckchem S8534 SCH772984 MedChemExpress HY-50846 25-hydroxycholesterol Sigma H1015-10MG Hemin chloride Cayman Chem 16487 Biotin-tyramide Apex Bio A8011 Lys-C Fisher Scientific NC9223464 Trypsin, mass spectrometry-grade Thermo 90305 SignalStain DAB Substrate Kit CST 8059 Critical commercial assays Renilla Luciferase Assay System Promega E2810 TMTpro 16plex Label Reagent Set Thermo A44520 TransIT-X2 Mirus MIR6000 KAPA mRNA HyperPrep kit Roche KK8580 Nano-Glo Live Cell Assay System Promega N2012 CellTiter-Glo Promega G7573 SuperScript IV Reverse Transcriptase kit Thermo 18090050 LightCycler 480 SYBR Green Roche 4887352001 Senescence beta-galactosidase activity assay CST 23833 QIAseq miRNA Library Kit Qiagen 331502 Proteome Profiler Human Cytokine Array Kit R&D Systems ARY005B Deposited data Raw ATAC-seq, RNA-seq, and small RNA-seq datasets This study GEO: GSE241893 Raw iDAPT-MS datasets This study ProteomeXchange: PXD034648 Experimental models: Cell lines HEK293T ATCC CRL-3216 VeroE6 ATCC CRL-1586 Huh7.5 ATCC CVCL-7927

    Article Title: Murine alveolar macrophages rapidly accumulate intranasally administered SARS-CoV-2 Spike protein leading to neutrophil recruitment and damage
    Article Snippet: Recombinant DNA reagent , Human coronavirus (HCoV-229E) Spike Gene ORF cDNA clone expression plasmid (Codon Optimized) HCoV-229E , SinoBiological , VG40605-UT , .

    Article Title: Differences in syncytia formation by SARS-CoV-2 variants modify host chromatin accessibility and cellular senescence via TP53.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-FLAG M2 Sigma Cat# F1804; RRID: AB_262044 Anti-DYKDDDDK (FLAG) Tag CST Cat# 14793S; RRID: AB_2572291 Anti-ACE2 ProSci Cat# 3217; RRID: AB_712925 Anti-ACTB Sigma Cat# A5316; RRID: AB_476743 Anti-SARS-CoV-2-Spike Sino Biological Cat# 40592-MM117; RRID: AB_3075426 Anti-MERS-CoV-Spike Sino Biological Cat# 100208-RP02; RRID: AB_3075428 Anti-Renilla Luciferase Abcam Cat# ab185925; RRID: AB_3075423 Anti-VSV-G [8G5F11] Kerafast Cat# EB0010; RRID: AB_2811223 Anti-VSV-M [23H12] Kerafast Cat# EB0011; RRID: AB_2734773 Anti-HA CST Cat# 2367S; RRID: AB_10691311 Anti-TP53 CST Cat# 9282S; RRID: AB_331476 Anti-CDKN1A/p21 CST Cat# 2947S; RRID: AB_823586 Anti-CXCL8/IL8 [E5F5Q] CST Cat# 94407; RRID: AB_3075425 Anti-CXCL1/2 [E5M6D] CST Cat# 24376; RRID: AB_3075424 Anti-Lamin B1 Abcam Cat# ab16048; RRID: AB_443298 Anti-GAPDH [14C10] CST Cat# 2118; RRID: AB_561053 Anti-Strep II Tag Novus Cat# NBP2-43735; RRID: AB_2916323 SARS-CoV-2 (2019-nCoV) Spike Neutralizing Antibody Sino Biological Cat# 40592-R001; RRID: AB_2857936 Anti-TP53 Santa Cruz Biotechnology Cat# sc-126; RRID: AB_628082 Anti-SARS-CoV-2 spike glycoprotein abcam Cat# ab272504; RRID: AB_2847845 SignalStain Boost IHC Detection Reagent, HRP Mouse CST Cat# 8125S; RRID: AB_10547893 SignalStain Boost IHC Detection Reagent, HRP Rabbit CST Cat# 8114S; RRID: AB_10544930 Rabbit IgG, HRP-linked F(ab’)2 fragment GE Healthcare Cat# NA9340; RRID: AB_772191 Mouse IgG, HRP-linked whole Ab GE Healthcare Cat# NA931; RRID: AB_772210 Streptavidin-HRP CST Cat# 3999S; RRID: AB_10830897 Pierce streptavidin bead slurry Thermo 88816 Bacterial and virus strains HKU5-SARS-CoV-1-S BEI NR-48814 SARS-CoV-2 isolate USA-WA1/2020 BEI NR-52281 MERS-CoV BEI NR-48813 SARS-CoV-2 B.1.1.7 (alpha) isolate BEI NR-54000 SARS-CoV-2 B.1.617.2 (delta) isolate BEI NR-55611 SARS-CoV-2 P.1 (gamma) isolate BEI NR-54982 SARS-CoV-2 BA.1 (omicron) isolate Pérez-Then et al.143 N/A VSVp-Rluc-VSVG virus Avanzato et al.49 N/A Biological samples Postmortem human lung specimens This study N/A Chemicals, peptides, and recombinant proteins Doxycycline Sigma D9891 E64d Selleckchem S7393 CMK Cayman Chem 14965 (Continued on next page) Cell Reports 42, 113478, December 26, 2023 21

    Mutagenesis:

    Article Title: Rapid simulation of glycoprotein structures by grafting and steric exclusion of glycan conformer libraries.
    Article Snippet: Masiulis et al.22 PDB: 6HUO MERS-CoV S structure in complex with 5-N-acetyl neuraminic acid Park et al.90 PDB: 6Q04 Cryo-EM structure of MERS-CoV spike protein, all RBD-down conformation This paper PDB: 7YN0 Cryo-EM structure of MERS-CoV spike protein, intermediate conformation This paper PDB: 7YMZ Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 1 This paper PDB: 7YMY Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 2 This paper PDB: 7YMX Cryo-EM structure of MERS-CoV spike protein, all RBD-down conformation This paper EMD-33949 Cryo-EM structure of MERS-CoV spike protein, intermediate conformation This paper EMD-33948 Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 1 This paper EMD-33947 Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 2 This paper EMD-33946 Fourier-cropped cryo-EM map of SARS-CoV-2 S-D614G (corresponding to PDB:7EAZ and EMDB:EMD-31047) This paper EMD-38650 Experimental models: Cell lines Expi293F Cells ThermoFisher Cat# A14527 HEK293 Freestyle ThermoFisher Cat# R79007 Recombinant DNA pcDNA3.1 CD33-N-cadherin (EC1-EC5; residues 160-712) This paper Custom synthesis based on Uniprot ID: NP_031690.3 pcDNA3.1 CD33-N-cadherin (EC4-EC5; residues 331-542) This paper Custom synthesis based on Uniprot ID: NP_031690.3 SARS-CoV-2 S protein with the D614G mutation in pcDNA3.4-TOPO This paper Custom synthesis based on Uniprot ID: P0DTC2 SARS-CoV S protein with the 2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40150-G-N (GenBank ID: AAP13567.1) MERS-CoV S protein with the 2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40069-NF (GenBank ID: APF29071.1) (Continued on next page) ll OPEN ACCESS Cell 187, 1296–1311.e1–e15, February 29, 2024 e2 Resource .. REAGENT or RESOURCE SOURCE IDENTIFIER MERS-CoV S protein with the fm2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40069-NF (GenBank ID: AFS88936.1) hCoV-NL63 S protein with the 2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40604-CF (GenBank ID: APF29071.1) hCoV-229E S protein with the 2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40605-CF (GenBank ID: APT69883.1) hCoV-HKU1 S protein with the fm2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40606-UT (GenBank ID: Q0ZME7.1) Software and algorithms GlyCONFORMER Grothaus et al.38 https://github.com/IsabellGrothaus/ GlyCONFORMER Relion 3.1 Zivanov et al.91 https://www3.mrc-lmb.cam.ac.uk/ relion//index.php?title=Main_Page CryoSPARC v3.2 Punjani et al.92 https://cryosparc.com/ Phenix 1.19.2-4158 Adams et al.93 http://www.phenix-online.org/ Win Coot 0.9.4.1 Emsley et al.94 https://www2.mrc-lmb.cam.ac.uk/ personal/pemsley/coot/ UCSF-ChimeraX 1.2.5 Pettersen et al.95 https://www.rbvi.ucsf.edu/chimerax/ Byonic v3.9.6 Protein Metrics, USA https://proteinmetrics.com/byos/ Byos v3.11 Protein Metrics, USA https://proteinmetrics.com/byos/ ATSAS-3.0.3-1 Manalastas-Cantos et al.96 https://www.embl-hamburg.de/ biosaxs/software.html SAXS deduction program Shih et al.97 N/A Gromacs 2018.2 or newer Abraham et al.98 www.gromacs.org Gromaps Briones et al.99 https://mptg-cbp.github.io/ gromaps.html MDAnalysis-1.1.1 Gowers et al.100 https://www.mdanalysis.org/ numpy-1.21.1 Harris et al.101 Numpy.org Matplotlib-2.2.3 Hunter102 Matplotlib.org mrcfile-1.4.3 Burnley et al.103 https://mrcfile.readthedocs.io/en/ stable/index.html GlycoSHIELD program suite: GlycoSHIELD, GlycoTRAJ, GlycoSASA, GlycoALPHAFOLD This paper Zenodo: https://zenodo.org/records/ 10668375 GlycoDENSITY This paper www.glycoshield.eu Modeller-10.4 Webb and Sali104 https://salilab.org/modeller/ Other Superdex 200 Increase 10/300 GL Cytiva Cat# 28990944 HiLoad 16/600 Superdex 75 pg Cytiva Cat# 28989333 HisPur Cobalt Resin ThermoFisher Cat# 89966 Superose 6 Increase 10/300 GL Cytiva Cat# 29091596 Carbon film 300 mesh Cu Grids Electron Microscopy Sciences Cat# CF300-Cu-50 Quantifoil R1.2/1.3 300-mesh Cu Grids. .. Ted Pella Cat# 658-300-CU-100 ll OPEN ACCESS Resource

    Software:

    Article Title: Rapid simulation of glycoprotein structures by grafting and steric exclusion of glycan conformer libraries.
    Article Snippet: Masiulis et al.22 PDB: 6HUO MERS-CoV S structure in complex with 5-N-acetyl neuraminic acid Park et al.90 PDB: 6Q04 Cryo-EM structure of MERS-CoV spike protein, all RBD-down conformation This paper PDB: 7YN0 Cryo-EM structure of MERS-CoV spike protein, intermediate conformation This paper PDB: 7YMZ Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 1 This paper PDB: 7YMY Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 2 This paper PDB: 7YMX Cryo-EM structure of MERS-CoV spike protein, all RBD-down conformation This paper EMD-33949 Cryo-EM structure of MERS-CoV spike protein, intermediate conformation This paper EMD-33948 Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 1 This paper EMD-33947 Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 2 This paper EMD-33946 Fourier-cropped cryo-EM map of SARS-CoV-2 S-D614G (corresponding to PDB:7EAZ and EMDB:EMD-31047) This paper EMD-38650 Experimental models: Cell lines Expi293F Cells ThermoFisher Cat# A14527 HEK293 Freestyle ThermoFisher Cat# R79007 Recombinant DNA pcDNA3.1 CD33-N-cadherin (EC1-EC5; residues 160-712) This paper Custom synthesis based on Uniprot ID: NP_031690.3 pcDNA3.1 CD33-N-cadherin (EC4-EC5; residues 331-542) This paper Custom synthesis based on Uniprot ID: NP_031690.3 SARS-CoV-2 S protein with the D614G mutation in pcDNA3.4-TOPO This paper Custom synthesis based on Uniprot ID: P0DTC2 SARS-CoV S protein with the 2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40150-G-N (GenBank ID: AAP13567.1) MERS-CoV S protein with the 2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40069-NF (GenBank ID: APF29071.1) (Continued on next page) ll OPEN ACCESS Cell 187, 1296–1311.e1–e15, February 29, 2024 e2 Resource .. REAGENT or RESOURCE SOURCE IDENTIFIER MERS-CoV S protein with the fm2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40069-NF (GenBank ID: AFS88936.1) hCoV-NL63 S protein with the 2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40604-CF (GenBank ID: APF29071.1) hCoV-229E S protein with the 2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40605-CF (GenBank ID: APT69883.1) hCoV-HKU1 S protein with the fm2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40606-UT (GenBank ID: Q0ZME7.1) Software and algorithms GlyCONFORMER Grothaus et al.38 https://github.com/IsabellGrothaus/ GlyCONFORMER Relion 3.1 Zivanov et al.91 https://www3.mrc-lmb.cam.ac.uk/ relion//index.php?title=Main_Page CryoSPARC v3.2 Punjani et al.92 https://cryosparc.com/ Phenix 1.19.2-4158 Adams et al.93 http://www.phenix-online.org/ Win Coot 0.9.4.1 Emsley et al.94 https://www2.mrc-lmb.cam.ac.uk/ personal/pemsley/coot/ UCSF-ChimeraX 1.2.5 Pettersen et al.95 https://www.rbvi.ucsf.edu/chimerax/ Byonic v3.9.6 Protein Metrics, USA https://proteinmetrics.com/byos/ Byos v3.11 Protein Metrics, USA https://proteinmetrics.com/byos/ ATSAS-3.0.3-1 Manalastas-Cantos et al.96 https://www.embl-hamburg.de/ biosaxs/software.html SAXS deduction program Shih et al.97 N/A Gromacs 2018.2 or newer Abraham et al.98 www.gromacs.org Gromaps Briones et al.99 https://mptg-cbp.github.io/ gromaps.html MDAnalysis-1.1.1 Gowers et al.100 https://www.mdanalysis.org/ numpy-1.21.1 Harris et al.101 Numpy.org Matplotlib-2.2.3 Hunter102 Matplotlib.org mrcfile-1.4.3 Burnley et al.103 https://mrcfile.readthedocs.io/en/ stable/index.html GlycoSHIELD program suite: GlycoSHIELD, GlycoTRAJ, GlycoSASA, GlycoALPHAFOLD This paper Zenodo: https://zenodo.org/records/ 10668375 GlycoDENSITY This paper www.glycoshield.eu Modeller-10.4 Webb and Sali104 https://salilab.org/modeller/ Other Superdex 200 Increase 10/300 GL Cytiva Cat# 28990944 HiLoad 16/600 Superdex 75 pg Cytiva Cat# 28989333 HisPur Cobalt Resin ThermoFisher Cat# 89966 Superose 6 Increase 10/300 GL Cytiva Cat# 29091596 Carbon film 300 mesh Cu Grids Electron Microscopy Sciences Cat# CF300-Cu-50 Quantifoil R1.2/1.3 300-mesh Cu Grids. .. Ted Pella Cat# 658-300-CU-100 ll OPEN ACCESS Resource

    Electron Microscopy:

    Article Title: Rapid simulation of glycoprotein structures by grafting and steric exclusion of glycan conformer libraries.
    Article Snippet: Masiulis et al.22 PDB: 6HUO MERS-CoV S structure in complex with 5-N-acetyl neuraminic acid Park et al.90 PDB: 6Q04 Cryo-EM structure of MERS-CoV spike protein, all RBD-down conformation This paper PDB: 7YN0 Cryo-EM structure of MERS-CoV spike protein, intermediate conformation This paper PDB: 7YMZ Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 1 This paper PDB: 7YMY Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 2 This paper PDB: 7YMX Cryo-EM structure of MERS-CoV spike protein, all RBD-down conformation This paper EMD-33949 Cryo-EM structure of MERS-CoV spike protein, intermediate conformation This paper EMD-33948 Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 1 This paper EMD-33947 Cryo-EM structure of MERS-CoV spike protein, One RBD-up conformation 2 This paper EMD-33946 Fourier-cropped cryo-EM map of SARS-CoV-2 S-D614G (corresponding to PDB:7EAZ and EMDB:EMD-31047) This paper EMD-38650 Experimental models: Cell lines Expi293F Cells ThermoFisher Cat# A14527 HEK293 Freestyle ThermoFisher Cat# R79007 Recombinant DNA pcDNA3.1 CD33-N-cadherin (EC1-EC5; residues 160-712) This paper Custom synthesis based on Uniprot ID: NP_031690.3 pcDNA3.1 CD33-N-cadherin (EC4-EC5; residues 331-542) This paper Custom synthesis based on Uniprot ID: NP_031690.3 SARS-CoV-2 S protein with the D614G mutation in pcDNA3.4-TOPO This paper Custom synthesis based on Uniprot ID: P0DTC2 SARS-CoV S protein with the 2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40150-G-N (GenBank ID: AAP13567.1) MERS-CoV S protein with the 2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40069-NF (GenBank ID: APF29071.1) (Continued on next page) ll OPEN ACCESS Cell 187, 1296–1311.e1–e15, February 29, 2024 e2 Resource .. REAGENT or RESOURCE SOURCE IDENTIFIER MERS-CoV S protein with the fm2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40069-NF (GenBank ID: AFS88936.1) hCoV-NL63 S protein with the 2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40604-CF (GenBank ID: APF29071.1) hCoV-229E S protein with the 2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40605-CF (GenBank ID: APT69883.1) hCoV-HKU1 S protein with the fm2P mutation in pcDNA3.4-TOPO This paper Subcloned from Sino Biological Cat# VG40606-UT (GenBank ID: Q0ZME7.1) Software and algorithms GlyCONFORMER Grothaus et al.38 https://github.com/IsabellGrothaus/ GlyCONFORMER Relion 3.1 Zivanov et al.91 https://www3.mrc-lmb.cam.ac.uk/ relion//index.php?title=Main_Page CryoSPARC v3.2 Punjani et al.92 https://cryosparc.com/ Phenix 1.19.2-4158 Adams et al.93 http://www.phenix-online.org/ Win Coot 0.9.4.1 Emsley et al.94 https://www2.mrc-lmb.cam.ac.uk/ personal/pemsley/coot/ UCSF-ChimeraX 1.2.5 Pettersen et al.95 https://www.rbvi.ucsf.edu/chimerax/ Byonic v3.9.6 Protein Metrics, USA https://proteinmetrics.com/byos/ Byos v3.11 Protein Metrics, USA https://proteinmetrics.com/byos/ ATSAS-3.0.3-1 Manalastas-Cantos et al.96 https://www.embl-hamburg.de/ biosaxs/software.html SAXS deduction program Shih et al.97 N/A Gromacs 2018.2 or newer Abraham et al.98 www.gromacs.org Gromaps Briones et al.99 https://mptg-cbp.github.io/ gromaps.html MDAnalysis-1.1.1 Gowers et al.100 https://www.mdanalysis.org/ numpy-1.21.1 Harris et al.101 Numpy.org Matplotlib-2.2.3 Hunter102 Matplotlib.org mrcfile-1.4.3 Burnley et al.103 https://mrcfile.readthedocs.io/en/ stable/index.html GlycoSHIELD program suite: GlycoSHIELD, GlycoTRAJ, GlycoSASA, GlycoALPHAFOLD This paper Zenodo: https://zenodo.org/records/ 10668375 GlycoDENSITY This paper www.glycoshield.eu Modeller-10.4 Webb and Sali104 https://salilab.org/modeller/ Other Superdex 200 Increase 10/300 GL Cytiva Cat# 28990944 HiLoad 16/600 Superdex 75 pg Cytiva Cat# 28989333 HisPur Cobalt Resin ThermoFisher Cat# 89966 Superose 6 Increase 10/300 GL Cytiva Cat# 29091596 Carbon film 300 mesh Cu Grids Electron Microscopy Sciences Cat# CF300-Cu-50 Quantifoil R1.2/1.3 300-mesh Cu Grids. .. Ted Pella Cat# 658-300-CU-100 ll OPEN ACCESS Resource



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