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codon-optimized cds  (Twist Bioscience)


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    Twist Bioscience codon-optimized cds
    Codon Optimized Cds, supplied by Twist Bioscience, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/codon-optimized+cds/codon+optimized+sequences/pmc10570959-220-4-6
    Average 90 stars, based on 1 article reviews
    codon-optimized cds - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Synthesized:

    Article Title: Unveiling the molecular basis of selective fluorination of SAM-dependent fluorinases
    Article Snippet: .. DNA sequences optimized for E. coli codons were synthesized by Twist Biosciences, Singapore. ..

    Plasmid Preparation:

    Article Title: Baseline Seroprevalence of Arboviruses in Liberia Using a Multiplex IgG Immunoassay
    Article Snippet: .. Briefly, codon-optimized synthetic genes (IDT, Coralville, IA; and Twist Biosciences, San Francisco, CA, USA) were inserted downstream of an inducible metallothionein (MT) promoter in plasmid vectors pMT-BiP (Invitrogen, Waltham, WA, USA) or pUHM (proprietary). .. Briefly, codon-optimized synthetic genes (IDT, Coralville, IA; and Twist Biosciences, San Francisco, CA, USA) were inserted downstream of an inducible metallothionein (MT) promoter in plasmid vectors pMT-BiP (Invitrogen, Waltham, WA, USA) or pUHM (proprietary).

    other:

    Article Title: TIR domains produce histidine-ADPR as an immune signal in bacteria.
    Article Snippet: Toll/interleukin-1 receptor (TIR) domains are central components of pattern recognition immune proteins across all domains of life.. In bacteria and plants, TIR-domain proteins recognize pathogen invasion and then produce immune signalling molecules exclusively comprising nucleotide moieties.. Here we show that the TIR-domain protein of the type II Thoeris defence system in bacteria produces a unique signalling molecule comprising the amino acid histidine conjugated to ADP-ribose (His-ADPR).

    Article Title: Insights into the methanol utilization capacity of Y. lipolytica and improvements through metabolic engineering.
    Article Snippet: All genes involved in the methanol assimilation pathway, the xylulose monophosphate (XuMP) pathway, the ribulose monophosphate (RuMP) pathway, and the resveratrol biosynthesis pathway were codon-optimized for Y. lipolytica expression and synthesized commercially by GeneArt or Twist Bioscience.

    Expressing:

    Article Title: Deciphering disordered regions controlling mRNA decay in high-throughput.
    Article Snippet: Intrinsically disordered regions within proteins drive specific molecular functions despite lacking a defined structure.. Although disordered regions are integral to controlling mRNA stability and translation, the mechanisms underlying these regulatory effects remain unclear.. Here we reveal the molecular determinants of this activity using high-throughput functional profiling.

    Clone Assay:

    Article Title: Deciphering the evolutionary origin of the enantioselectivity of short-chain dehydrogenases from plants toward 1-borneol
    Article Snippet: .. Codon-optimized synthetic gene fragments were either cloned into pET15b or pET28a(+)or purchased in pET28a(+) from GenScript (US) or Twist Bioscience (US) with sequences containing an N-terminal polyhistidine tag. ..



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    (a) De-MARylation activity of SARS-CoV-2 MD tested by immunoblotting (WB). SARS-CoV-2 MD was incubated with MARylated <t>GST-hPARP10</t> CD at molar ratio 1:1 in absence and presence of each depicted compound and excess. Samples were obtained at the indicated times. Coomassie Blue (CB) stain was used for the total protein amount verification. These experiments were performed in triplicates. (b) Chemical structures of the used compounds (left to right) ADPr, remdesivir, GS-441524 and its chlorinated analogue. (c) Quantification results for the experiments from panel (a) in 100 (left) and 500 (right) times excess for each of the used compounds. For this procedure the bands from each experiment were quantified by Image Lab software. Plots and rate quantification were obtained by Origin2019b after summarizing the results from each independent experiment for the tested compounds.
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    Image Search Results


    (a) De-MARylation activity of SARS-CoV-2 MD tested by immunoblotting (WB). SARS-CoV-2 MD was incubated with MARylated GST-hPARP10 CD at molar ratio 1:1 in absence and presence of each depicted compound and excess. Samples were obtained at the indicated times. Coomassie Blue (CB) stain was used for the total protein amount verification. These experiments were performed in triplicates. (b) Chemical structures of the used compounds (left to right) ADPr, remdesivir, GS-441524 and its chlorinated analogue. (c) Quantification results for the experiments from panel (a) in 100 (left) and 500 (right) times excess for each of the used compounds. For this procedure the bands from each experiment were quantified by Image Lab software. Plots and rate quantification were obtained by Origin2019b after summarizing the results from each independent experiment for the tested compounds.

    Journal: Journal of Molecular Biology

    Article Title: Binding adaptation of GS-441524 diversifies macro domains and downregulate SARS-CoV-2 de-MARylation capacity

    doi: 10.1016/j.jmb.2022.167720

    Figure Lengend Snippet: (a) De-MARylation activity of SARS-CoV-2 MD tested by immunoblotting (WB). SARS-CoV-2 MD was incubated with MARylated GST-hPARP10 CD at molar ratio 1:1 in absence and presence of each depicted compound and excess. Samples were obtained at the indicated times. Coomassie Blue (CB) stain was used for the total protein amount verification. These experiments were performed in triplicates. (b) Chemical structures of the used compounds (left to right) ADPr, remdesivir, GS-441524 and its chlorinated analogue. (c) Quantification results for the experiments from panel (a) in 100 (left) and 500 (right) times excess for each of the used compounds. For this procedure the bands from each experiment were quantified by Image Lab software. Plots and rate quantification were obtained by Origin2019b after summarizing the results from each independent experiment for the tested compounds.

    Article Snippet: The codon optimized cDNA sequence coding the catalytic domain hPARP10 (hPARP10 CD) residues 806-1025 (GenBank entry BC014229.2) was obtained from GenScript, (Piscataway, NJ) into a pGEX-4T-1 vector providing an N-terminal GST-fusion tag.

    Techniques: Activity Assay, Western Blot, Incubation, Staining, Software

    (a) De-MARylation activity of SARS-CoV-1, MERS-CoV and SARS-CoV-2 F360N MDs tested by immunoblotting (WB). MDs were incubated with MARylated GST-hPARP10 CD at molar ratio 1:1 in absence and presence of each depicted compound and excess. Samples were obtained at the indicated times. Coomassie Blue (CB) stain was used for the total protein amount verification. These experiments were performed in triplicates. (b) Quantification results for the experiments from panel (a) for SARS-CoV-1 (left), MERS-CoV (middle) and SARS-CoV-2 F360N mutant (right) MDs. For this procedure the bands from each experiment were quantified by Image Lab software. Plots and rate quantification were obtained by Origin2019b after summarizing the results from each independent experiment for the tested compounds.

    Journal: Journal of Molecular Biology

    Article Title: Binding adaptation of GS-441524 diversifies macro domains and downregulate SARS-CoV-2 de-MARylation capacity

    doi: 10.1016/j.jmb.2022.167720

    Figure Lengend Snippet: (a) De-MARylation activity of SARS-CoV-1, MERS-CoV and SARS-CoV-2 F360N MDs tested by immunoblotting (WB). MDs were incubated with MARylated GST-hPARP10 CD at molar ratio 1:1 in absence and presence of each depicted compound and excess. Samples were obtained at the indicated times. Coomassie Blue (CB) stain was used for the total protein amount verification. These experiments were performed in triplicates. (b) Quantification results for the experiments from panel (a) for SARS-CoV-1 (left), MERS-CoV (middle) and SARS-CoV-2 F360N mutant (right) MDs. For this procedure the bands from each experiment were quantified by Image Lab software. Plots and rate quantification were obtained by Origin2019b after summarizing the results from each independent experiment for the tested compounds.

    Article Snippet: The codon optimized cDNA sequence coding the catalytic domain hPARP10 (hPARP10 CD) residues 806-1025 (GenBank entry BC014229.2) was obtained from GenScript, (Piscataway, NJ) into a pGEX-4T-1 vector providing an N-terminal GST-fusion tag.

    Techniques: Activity Assay, Western Blot, Incubation, Staining, Mutagenesis, Software

    (a) De-MARylation activity of CHIKV, MAYV and VEEV MDs tested by immunoblotting (WB). MDs were incubated with MARylated GST-hPARP10 CD at molar ratio 1:1 in absence and presence of each depicted compound and excess. Samples were obtained at the indicated times. Coomassie Blue (CB) stain was used for the total protein amount verification. These experiments were performed in triplicates. (b) Quantification results for the experiments from panel (a) for CHIKV (left), MAYV (middle) and VEEV (right) MDs. For this procedure the bands from each experiment were quantified by Image Lab software. Plots and rate quantification were obtained by Origin2019b after summarizing the results from each independent experiment for the tested compounds.

    Journal: Journal of Molecular Biology

    Article Title: Binding adaptation of GS-441524 diversifies macro domains and downregulate SARS-CoV-2 de-MARylation capacity

    doi: 10.1016/j.jmb.2022.167720

    Figure Lengend Snippet: (a) De-MARylation activity of CHIKV, MAYV and VEEV MDs tested by immunoblotting (WB). MDs were incubated with MARylated GST-hPARP10 CD at molar ratio 1:1 in absence and presence of each depicted compound and excess. Samples were obtained at the indicated times. Coomassie Blue (CB) stain was used for the total protein amount verification. These experiments were performed in triplicates. (b) Quantification results for the experiments from panel (a) for CHIKV (left), MAYV (middle) and VEEV (right) MDs. For this procedure the bands from each experiment were quantified by Image Lab software. Plots and rate quantification were obtained by Origin2019b after summarizing the results from each independent experiment for the tested compounds.

    Article Snippet: The codon optimized cDNA sequence coding the catalytic domain hPARP10 (hPARP10 CD) residues 806-1025 (GenBank entry BC014229.2) was obtained from GenScript, (Piscataway, NJ) into a pGEX-4T-1 vector providing an N-terminal GST-fusion tag.

    Techniques: Activity Assay, Western Blot, Incubation, Staining, Software