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Lundbeck reference compound lundbeck cmp 1a
a A structure of the active GPR139 bound to the <t>reference</t> <t>compound</t> JNJ-63533054 was used in the ultra-large docking screen. b A library of 235 million lead-like compounds from the ZINC database was docked to the orthosteric site using DOCK3.7, and a set of 68 top-ranked compounds were selected for synthesis. c Primary screening of compounds at 10 µM in Ca 2+ mobilization assay. A threshold of 25% Ca 2+ response was used to select compounds for further evaluation. Data represent mean ± SEM of at least three independent experiments performed in triplicates and are normalized to buffer (0%) and 10 µM of the control ( Lundbeck Cmp <t>1a</t> , 100%).
Reference Compound Lundbeck Cmp 1a, supplied by Lundbeck, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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1) Product Images from "Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139"

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139

Journal: Nature Communications

doi: 10.1038/s41467-025-66845-y

a A structure of the active GPR139 bound to the reference compound JNJ-63533054 was used in the ultra-large docking screen. b A library of 235 million lead-like compounds from the ZINC database was docked to the orthosteric site using DOCK3.7, and a set of 68 top-ranked compounds were selected for synthesis. c Primary screening of compounds at 10 µM in Ca 2+ mobilization assay. A threshold of 25% Ca 2+ response was used to select compounds for further evaluation. Data represent mean ± SEM of at least three independent experiments performed in triplicates and are normalized to buffer (0%) and 10 µM of the control ( Lundbeck Cmp 1a , 100%).
Figure Legend Snippet: a A structure of the active GPR139 bound to the reference compound JNJ-63533054 was used in the ultra-large docking screen. b A library of 235 million lead-like compounds from the ZINC database was docked to the orthosteric site using DOCK3.7, and a set of 68 top-ranked compounds were selected for synthesis. c Primary screening of compounds at 10 µM in Ca 2+ mobilization assay. A threshold of 25% Ca 2+ response was used to select compounds for further evaluation. Data represent mean ± SEM of at least three independent experiments performed in triplicates and are normalized to buffer (0%) and 10 µM of the control ( Lundbeck Cmp 1a , 100%).

Techniques Used: Control

a Compounds – 5 were pharmacologically characterized for their ability to b stimulate intracellular Ca 2+ mobilization and c inositol monophosphate (IP ) accumulation. Data represent mean ± SEM of at least three independent experiments performed in triplicates and are normalized to buffer (0%) and 10 µM of the control ( Lundbeck Cmp 1a , 100%). The potencies (EC 50 ) determined using the Ca 2+ mobilization assay are shown below each compound structure in ( a ). d Predicted binding modes of compounds – 5 . The receptor is depicted as a cartoon with ligands and selected side chains shown in sticks. Hydrogen bonds are indicated using dashed lines. The structures of the predicted complexes are provided in Supplementary Data .
Figure Legend Snippet: a Compounds – 5 were pharmacologically characterized for their ability to b stimulate intracellular Ca 2+ mobilization and c inositol monophosphate (IP ) accumulation. Data represent mean ± SEM of at least three independent experiments performed in triplicates and are normalized to buffer (0%) and 10 µM of the control ( Lundbeck Cmp 1a , 100%). The potencies (EC 50 ) determined using the Ca 2+ mobilization assay are shown below each compound structure in ( a ). d Predicted binding modes of compounds – 5 . The receptor is depicted as a cartoon with ligands and selected side chains shown in sticks. Hydrogen bonds are indicated using dashed lines. The structures of the predicted complexes are provided in Supplementary Data .

Techniques Used: Control, Binding Assay

a , b Structure of core scaffold (R = aromatic ring) explored in optimization and representative analogs of compound 1 with EC 50 values from the Ca 2+ mobilization assay. The blue and green areas in ( a ) show analogs based on six-membered and five-membered ring substituents, respectively. c The reference GPR139 agonists Lundbeck Cmp 1a, JNJ-63533054, TAK-041 , and compound 1.1 were evaluated for their ability to stimulate intracellular Ca 2+ mobilization and IP 1 accumulation. Data represent mean ± SEM of at least three independent experiments performed in triplicates and are normalized to buffer (0%) and 10 µM of the control ( Lundbeck Cmp 1a , 100%). d Chemical structures comparison of the reference agonists and compound 1.1 .
Figure Legend Snippet: a , b Structure of core scaffold (R = aromatic ring) explored in optimization and representative analogs of compound 1 with EC 50 values from the Ca 2+ mobilization assay. The blue and green areas in ( a ) show analogs based on six-membered and five-membered ring substituents, respectively. c The reference GPR139 agonists Lundbeck Cmp 1a, JNJ-63533054, TAK-041 , and compound 1.1 were evaluated for their ability to stimulate intracellular Ca 2+ mobilization and IP 1 accumulation. Data represent mean ± SEM of at least three independent experiments performed in triplicates and are normalized to buffer (0%) and 10 µM of the control ( Lundbeck Cmp 1a , 100%). d Chemical structures comparison of the reference agonists and compound 1.1 .

Techniques Used: Control, Comparison

Related Articles

Activity Assay:

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139.
Article Snippet: .. Out of the 68 compounds tested for both agonist and antagonist activity at GPR139, 14 compounds (1–14) were found to have agonist activity as they stimulated a calcium mobilization response larger than 25% relative to the response observed for the reference Lundbeck Cmp 1a (Figure 1c, Supplementary Table 2). .. None of the compounds had antagonist activity, as those that inhibited the response of Lundbeck Cmp 1a in the antagonist mode screen also produced a response in the agonist mode screen (Supplementary Figure 1).

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139.
Article Snippet: .. Following 20 minutes incubation with the compounds added in the first step, in the second step an EC80 concentration (800 nM) of the reference agonist Lundbeck Cmp 1a was applied to test for antagonist activity (antagonist mode). ..

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139.
Article Snippet: Out of the 68 compounds tested for both agonist and antagonist activity at GPR139, 14 compounds (1–14) were found to have agonist activity as they stimulated a calcium mobilization response larger than 25% relative to the response observed for the reference Lundbeck Cmp 1a (Figure 1c, Supplementary Table 2). .. None of the compounds had antagonist activity, as those that inhibited the response of Lundbeck Cmp 1a in the antagonist mode screen also produced a response in the agonist mode screen (Supplementary Figure 1). ..

Incubation:

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139.
Article Snippet: .. Following 20 minutes incubation with the compounds added in the first step, in the second step an EC80 concentration (800 nM) of the reference agonist Lundbeck Cmp 1a was applied to test for antagonist activity (antagonist mode). ..

Concentration Assay:

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139.
Article Snippet: .. Following 20 minutes incubation with the compounds added in the first step, in the second step an EC80 concentration (800 nM) of the reference agonist Lundbeck Cmp 1a was applied to test for antagonist activity (antagonist mode). ..

other:

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139.
Article Snippet: Data represent mean ± SEM of at least three independent experiments performed in triplicates and are normalized to buffer (0%) and 10 μM of the control (Lundbeck Cmp 1a, 100%).

Functional Assay:

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139
Article Snippet: Pharmacological data and statistical analyses were performed in GraphPad Prism v9–10 (Graphpad Software Inc., San Diego, CA), which are also specifically described in the figure and table legends. .. The functional assay responses were normalized to buffer (0%) and Lundbeck Cmp 1a or JNJ-63533054 (100%), for Ca 2+ and IP 1 experiments in the GPR139-CHOk1 stable cell line or Ca 2+ , G protein activation, and arrestin-3 recruitment experiments in the HEK293A cells transiently transfected with GPR139, respectively. ..

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139.
Article Snippet: Pharmacological data and statistical analyses were performed in GraphPad Prism v9–10 (Graphpad Software Inc., San Diego, CA), which also are specifically described in the figure and table legends. .. The functional assay responses were normalized to buffer (0%) and Lundbeck Cmp 1a or JNJ-63533054 (100%), for Ca2+ and IP1 experiments in the GPR139-CHOk1 stable cell line or Ca2+, G protein activation and arrestin-3 recruitment experiments in the HEK293A cells transiently transfected with GPR139, respectively. ..

Stable Transfection:

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139
Article Snippet: Pharmacological data and statistical analyses were performed in GraphPad Prism v9–10 (Graphpad Software Inc., San Diego, CA), which are also specifically described in the figure and table legends. .. The functional assay responses were normalized to buffer (0%) and Lundbeck Cmp 1a or JNJ-63533054 (100%), for Ca 2+ and IP 1 experiments in the GPR139-CHOk1 stable cell line or Ca 2+ , G protein activation, and arrestin-3 recruitment experiments in the HEK293A cells transiently transfected with GPR139, respectively. ..

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139.
Article Snippet: Pharmacological data and statistical analyses were performed in GraphPad Prism v9–10 (Graphpad Software Inc., San Diego, CA), which also are specifically described in the figure and table legends. .. The functional assay responses were normalized to buffer (0%) and Lundbeck Cmp 1a or JNJ-63533054 (100%), for Ca2+ and IP1 experiments in the GPR139-CHOk1 stable cell line or Ca2+, G protein activation and arrestin-3 recruitment experiments in the HEK293A cells transiently transfected with GPR139, respectively. ..

Activation Assay:

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139
Article Snippet: Pharmacological data and statistical analyses were performed in GraphPad Prism v9–10 (Graphpad Software Inc., San Diego, CA), which are also specifically described in the figure and table legends. .. The functional assay responses were normalized to buffer (0%) and Lundbeck Cmp 1a or JNJ-63533054 (100%), for Ca 2+ and IP 1 experiments in the GPR139-CHOk1 stable cell line or Ca 2+ , G protein activation, and arrestin-3 recruitment experiments in the HEK293A cells transiently transfected with GPR139, respectively. ..

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139.
Article Snippet: Pharmacological data and statistical analyses were performed in GraphPad Prism v9–10 (Graphpad Software Inc., San Diego, CA), which also are specifically described in the figure and table legends. .. The functional assay responses were normalized to buffer (0%) and Lundbeck Cmp 1a or JNJ-63533054 (100%), for Ca2+ and IP1 experiments in the GPR139-CHOk1 stable cell line or Ca2+, G protein activation and arrestin-3 recruitment experiments in the HEK293A cells transiently transfected with GPR139, respectively. ..

Transfection:

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139
Article Snippet: Pharmacological data and statistical analyses were performed in GraphPad Prism v9–10 (Graphpad Software Inc., San Diego, CA), which are also specifically described in the figure and table legends. .. The functional assay responses were normalized to buffer (0%) and Lundbeck Cmp 1a or JNJ-63533054 (100%), for Ca 2+ and IP 1 experiments in the GPR139-CHOk1 stable cell line or Ca 2+ , G protein activation, and arrestin-3 recruitment experiments in the HEK293A cells transiently transfected with GPR139, respectively. ..

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139.
Article Snippet: Pharmacological data and statistical analyses were performed in GraphPad Prism v9–10 (Graphpad Software Inc., San Diego, CA), which also are specifically described in the figure and table legends. .. The functional assay responses were normalized to buffer (0%) and Lundbeck Cmp 1a or JNJ-63533054 (100%), for Ca2+ and IP1 experiments in the GPR139-CHOk1 stable cell line or Ca2+, G protein activation and arrestin-3 recruitment experiments in the HEK293A cells transiently transfected with GPR139, respectively. ..

Produced:

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139.
Article Snippet: Out of the 68 compounds tested for both agonist and antagonist activity at GPR139, 14 compounds (1–14) were found to have agonist activity as they stimulated a calcium mobilization response larger than 25% relative to the response observed for the reference Lundbeck Cmp 1a (Figure 1c, Supplementary Table 2). .. None of the compounds had antagonist activity, as those that inhibited the response of Lundbeck Cmp 1a in the antagonist mode screen also produced a response in the agonist mode screen (Supplementary Figure 1). ..



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Lundbeck reference compound lundbeck cmp 1a
a A structure of the active GPR139 bound to the <t>reference</t> <t>compound</t> JNJ-63533054 was used in the ultra-large docking screen. b A library of 235 million lead-like compounds from the ZINC database was docked to the orthosteric site using DOCK3.7, and a set of 68 top-ranked compounds were selected for synthesis. c Primary screening of compounds at 10 µM in Ca 2+ mobilization assay. A threshold of 25% Ca 2+ response was used to select compounds for further evaluation. Data represent mean ± SEM of at least three independent experiments performed in triplicates and are normalized to buffer (0%) and 10 µM of the control ( Lundbeck Cmp <t>1a</t> , 100%).
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Lundbeck reference gpr139 agonists lundbeck cmp 1a
a A structure of the active GPR139 bound to the <t>reference</t> <t>compound</t> JNJ-63533054 was used in the ultra-large docking screen. b A library of 235 million lead-like compounds from the ZINC database was docked to the orthosteric site using DOCK3.7, and a set of 68 top-ranked compounds were selected for synthesis. c Primary screening of compounds at 10 µM in Ca 2+ mobilization assay. A threshold of 25% Ca 2+ response was used to select compounds for further evaluation. Data represent mean ± SEM of at least three independent experiments performed in triplicates and are normalized to buffer (0%) and 10 µM of the control ( Lundbeck Cmp <t>1a</t> , 100%).
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a A structure of the active GPR139 bound to the reference compound JNJ-63533054 was used in the ultra-large docking screen. b A library of 235 million lead-like compounds from the ZINC database was docked to the orthosteric site using DOCK3.7, and a set of 68 top-ranked compounds were selected for synthesis. c Primary screening of compounds at 10 µM in Ca 2+ mobilization assay. A threshold of 25% Ca 2+ response was used to select compounds for further evaluation. Data represent mean ± SEM of at least three independent experiments performed in triplicates and are normalized to buffer (0%) and 10 µM of the control ( Lundbeck Cmp 1a , 100%).

Journal: Nature Communications

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139

doi: 10.1038/s41467-025-66845-y

Figure Lengend Snippet: a A structure of the active GPR139 bound to the reference compound JNJ-63533054 was used in the ultra-large docking screen. b A library of 235 million lead-like compounds from the ZINC database was docked to the orthosteric site using DOCK3.7, and a set of 68 top-ranked compounds were selected for synthesis. c Primary screening of compounds at 10 µM in Ca 2+ mobilization assay. A threshold of 25% Ca 2+ response was used to select compounds for further evaluation. Data represent mean ± SEM of at least three independent experiments performed in triplicates and are normalized to buffer (0%) and 10 µM of the control ( Lundbeck Cmp 1a , 100%).

Article Snippet: Notably, the EC 50 values of the most potent compounds ( and , EC 50 = 160 and 320 nM, respectively) were comparable to the reference compound Lundbeck Cmp 1a (EC 50 = 200 nM).

Techniques: Control

a Compounds – 5 were pharmacologically characterized for their ability to b stimulate intracellular Ca 2+ mobilization and c inositol monophosphate (IP ) accumulation. Data represent mean ± SEM of at least three independent experiments performed in triplicates and are normalized to buffer (0%) and 10 µM of the control ( Lundbeck Cmp 1a , 100%). The potencies (EC 50 ) determined using the Ca 2+ mobilization assay are shown below each compound structure in ( a ). d Predicted binding modes of compounds – 5 . The receptor is depicted as a cartoon with ligands and selected side chains shown in sticks. Hydrogen bonds are indicated using dashed lines. The structures of the predicted complexes are provided in Supplementary Data .

Journal: Nature Communications

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139

doi: 10.1038/s41467-025-66845-y

Figure Lengend Snippet: a Compounds – 5 were pharmacologically characterized for their ability to b stimulate intracellular Ca 2+ mobilization and c inositol monophosphate (IP ) accumulation. Data represent mean ± SEM of at least three independent experiments performed in triplicates and are normalized to buffer (0%) and 10 µM of the control ( Lundbeck Cmp 1a , 100%). The potencies (EC 50 ) determined using the Ca 2+ mobilization assay are shown below each compound structure in ( a ). d Predicted binding modes of compounds – 5 . The receptor is depicted as a cartoon with ligands and selected side chains shown in sticks. Hydrogen bonds are indicated using dashed lines. The structures of the predicted complexes are provided in Supplementary Data .

Article Snippet: Notably, the EC 50 values of the most potent compounds ( and , EC 50 = 160 and 320 nM, respectively) were comparable to the reference compound Lundbeck Cmp 1a (EC 50 = 200 nM).

Techniques: Control, Binding Assay

a , b Structure of core scaffold (R = aromatic ring) explored in optimization and representative analogs of compound 1 with EC 50 values from the Ca 2+ mobilization assay. The blue and green areas in ( a ) show analogs based on six-membered and five-membered ring substituents, respectively. c The reference GPR139 agonists Lundbeck Cmp 1a, JNJ-63533054, TAK-041 , and compound 1.1 were evaluated for their ability to stimulate intracellular Ca 2+ mobilization and IP 1 accumulation. Data represent mean ± SEM of at least three independent experiments performed in triplicates and are normalized to buffer (0%) and 10 µM of the control ( Lundbeck Cmp 1a , 100%). d Chemical structures comparison of the reference agonists and compound 1.1 .

Journal: Nature Communications

Article Title: Ultra-large virtual screening unveils potent agonists of the neuromodulatory orphan receptor GPR139

doi: 10.1038/s41467-025-66845-y

Figure Lengend Snippet: a , b Structure of core scaffold (R = aromatic ring) explored in optimization and representative analogs of compound 1 with EC 50 values from the Ca 2+ mobilization assay. The blue and green areas in ( a ) show analogs based on six-membered and five-membered ring substituents, respectively. c The reference GPR139 agonists Lundbeck Cmp 1a, JNJ-63533054, TAK-041 , and compound 1.1 were evaluated for their ability to stimulate intracellular Ca 2+ mobilization and IP 1 accumulation. Data represent mean ± SEM of at least three independent experiments performed in triplicates and are normalized to buffer (0%) and 10 µM of the control ( Lundbeck Cmp 1a , 100%). d Chemical structures comparison of the reference agonists and compound 1.1 .

Article Snippet: Notably, the EC 50 values of the most potent compounds ( and , EC 50 = 160 and 320 nM, respectively) were comparable to the reference compound Lundbeck Cmp 1a (EC 50 = 200 nM).

Techniques: Control, Comparison