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Dotmatics Limited cloud based omiq software
Cloud Based Omiq Software, supplied by Dotmatics Limited, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cloud+software/omiq+software/pmc13011347-123-5-8
Average 86 stars, based on 1 article reviews
cloud based omiq software - by Bioz Stars, 2026-10
86/100 stars

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Article Title: A Three-Gene Interferon Signature Predicts Sustained Complete Remission in Pediatric AML Patients.
Article Snippet: Cells were stained with Zombie UV Fixable Viability Dye (BioLegend, San Diego, CA, USA, Cat#423108), treated with human Fc receptor block (BD Pharmingen, San Diego, CA, USA, Cat# 564219; RRID: AB_2728082) and mouse serum (Invitrogen, Carlsbad, CA, USA, Cat#01-6501), stained according to the manufacturer’s instructions with antibody cocktails (Supplementary File S3) extracellularly and intracellularly (FIX & PERM Cell Kit, Invitrogen, Carlsbad, CA, USA, Invitrogen Cat# GAS003), and acquired on a FACSymphony A5 (BD Biosciences, San Jose, CA, USA; RRID:SCR_022538). .. Data analysis was conducted using the OMIQ software (Dotmatics, Boston, MA, USA: www.omiq.ai, www.dotmatics.com). ..

Article Title: Human Blood IgA + Memory B Cells Differ From IgG + B Cells by Expressing Gut‐Homing and Regulatory Markers
Article Snippet: Stained cells were analyzed using a Cytek Aurora spectral Flow cytometer. .. Data analysis was performed using OMIQ software (Dotmatics, www.dotmatics.com ) according to guidelines for the use of flow cytometry. ..

Article Title: Cell-Mediated Immunity of mRNA-1283 Vaccine Encoding SARS-CoV-2 Spike Receptor-Binding and N-Terminal Domains in Preclinical and Clinical Studies.
Article Snippet: Background.. Cell-mediated immunity contributes to durable protection against COVID-19. mRNA-1283 vaccine, encoding the receptor-binding and N-terminal domains of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) spike protein, elicits higher neutralizing antibody responses than mRNA-1273, which encodes the full-length spike protein.. We report T-cell responses following mRNA-1283 vaccination in preclinical and clinical studies.

Article Title: Loss of Ehmt2/G9a function in zebrafish is associated with global deficiency in H3K9 dimethylation, misregulated cell cycle dynamics, and embryonic developmental delay
Article Snippet: Flow Cytometry was performed on a BD LSRFortessaTM X-20 and cell stage was determined via chromatin content determined by DAPI incorporation [ ]. .. Data was analysed using OMIQ software ( www.omiq.ai ) from Dotmatics ( www.dotmatics.com ). ..

Article Title: Microporous annealed particle scaffolds avoid foreign body response by down regulating complement-fibroblast-macrophage signaling loop
Article Snippet: The data was normalized with beads according to Standard BioTools protocols, then debarcoded using a previously published code. .. The debarcoded files were imported into OMIQ software (Dotmatics, USA). ..

Article Title: The inflammatory fingerprint reveals immune cell populations associated with disease activity in cardiac sarcoidosis.
Article Snippet: .. A classical gating strategy was applied to the 36-color panel using the OMIQ software (Dotmatics, MA, USA). ..

Article Title: A Three-Gene Interferon Signature Predicts Sustained Complete Remission in Pediatric AML Patients
Article Snippet: Cells were stained with Zombie UV Fixable Viability Dye (BioLegend, San Diego, CA, USA, Cat#423108), treated with human Fc receptor block (BD Pharmingen, San Diego, CA, USA, Cat# 564219; RRID: AB_2728082) and mouse serum (Invitrogen, Carlsbad, CA, USA, Cat#01-6501), stained according to the manufacturer’s instructions with antibody cocktails ( ) extracellularly and intracellularly (FIX & PERM Cell Kit, Invitrogen, Carlsbad, CA, USA, Invitrogen Cat# GAS003), and acquired on a FACSymphony A5 (BD Biosciences, San Jose, CA, USA; RRID:SCR_022538). .. Data analysis was conducted using the OMIQ software (Dotmatics, Boston, MA, USA: www.omiq.ai , www.dotmatics.com ). ..

Article Title: Multiple sclerosis-associated HLA demarcates EBV-specific CD8 + T cells with an exhausted and brain residency phenotype
Article Snippet: .. Flow cytometry data were analyzed using OMIQ software form Dotmatics. ..

Flow Cytometry:

Article Title: Human Blood IgA + Memory B Cells Differ From IgG + B Cells by Expressing Gut‐Homing and Regulatory Markers
Article Snippet: Stained cells were analyzed using a Cytek Aurora spectral Flow cytometer. .. Data analysis was performed using OMIQ software (Dotmatics, www.dotmatics.com ) according to guidelines for the use of flow cytometry. ..

Article Title: Multiple sclerosis-associated HLA demarcates EBV-specific CD8 + T cells with an exhausted and brain residency phenotype
Article Snippet: .. Flow cytometry data were analyzed using OMIQ software form Dotmatics. ..



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Proliferation of T cells from patients ( N = 6), TC ( N = 8), and local controls (LC; N = 6), assessed by CFSE dilution after 5 days of anti-CD3/CD28 stimulation. ( B ) Cytokine production by memory T cells from patients ( N = 6), TC ( N = 8), and LC ( N = 6) after 24-hour anti-CD3/CD28 stimulation, assessed by flow cytometry. ( C ) Cytokine production by CLA + (skin-tropic) and CLA − memory CD4 T cells from patients ( N = 6) and controls ( N = 14). Cytokines secreted by PBMCs from patients ( N = 6), TC ( N = 6), and LC ( N = 6) after 24-hour anti-CD3/CD28 stimulation, measured by <t>LEGENDplex.</t> Proliferation of αL-deficient T cells (from patients) cocultured with allogeneic MDDCs at the indicated ratios. Representative CFSE histograms are shown on the right (DC:T 1:2). Each dot represents one allogeneic pairing (LC, N = 10; TC, N = 8; P, N = 6). See also ( to ). Proliferation of allogeneic T cells (from controls, N = 7) induced by MDDCs from P1 or healthy donors (HDs). Representative CFSE histograms are shown on the right (DC:T 1:2). Each dot represents one allogeneic pairing. See also ( and ). Two-way ANOVA tests with Tukey’s correction were used in (A), (B), (D), and (E). Mann-Whitney tests with Holm-Šidák correction were used in (C) and (F). * P < 0.05 and ** P < 0.01. MHC, major histocompatibility complex.
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Proliferation of T cells from patients ( N = 6), TC ( N = 8), and local controls (LC; N = 6), assessed by CFSE dilution after 5 days of anti-CD3/CD28 stimulation. ( B ) Cytokine production by memory T cells from patients ( N = 6), TC ( N = 8), and LC ( N = 6) after 24-hour anti-CD3/CD28 stimulation, assessed by flow cytometry. ( C ) Cytokine production by CLA + (skin-tropic) and CLA − memory CD4 T cells from patients ( N = 6) and controls ( N = 14). Cytokines secreted by PBMCs from patients ( N = 6), TC ( N = 6), and LC ( N = 6) after 24-hour anti-CD3/CD28 stimulation, measured by <t>LEGENDplex.</t> Proliferation of αL-deficient T cells (from patients) cocultured with allogeneic MDDCs at the indicated ratios. Representative CFSE histograms are shown on the right (DC:T 1:2). Each dot represents one allogeneic pairing (LC, N = 10; TC, N = 8; P, N = 6). See also ( to ). Proliferation of allogeneic T cells (from controls, N = 7) induced by MDDCs from P1 or healthy donors (HDs). Representative CFSE histograms are shown on the right (DC:T 1:2). Each dot represents one allogeneic pairing. See also ( and ). Two-way ANOVA tests with Tukey’s correction were used in (A), (B), (D), and (E). Mann-Whitney tests with Holm-Šidák correction were used in (C) and (F). * P < 0.05 and ** P < 0.01. MHC, major histocompatibility complex.
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Proliferation of T cells from patients ( N = 6), TC ( N = 8), and local controls (LC; N = 6), assessed by CFSE dilution after 5 days of anti-CD3/CD28 stimulation. ( B ) Cytokine production by memory T cells from patients ( N = 6), TC ( N = 8), and LC ( N = 6) after 24-hour anti-CD3/CD28 stimulation, assessed by flow cytometry. ( C ) Cytokine production by CLA + (skin-tropic) and CLA − memory CD4 T cells from patients ( N = 6) and controls ( N = 14). Cytokines secreted by PBMCs from patients ( N = 6), TC ( N = 6), and LC ( N = 6) after 24-hour anti-CD3/CD28 stimulation, measured by LEGENDplex. Proliferation of αL-deficient T cells (from patients) cocultured with allogeneic MDDCs at the indicated ratios. Representative CFSE histograms are shown on the right (DC:T 1:2). Each dot represents one allogeneic pairing (LC, N = 10; TC, N = 8; P, N = 6). See also ( to ). Proliferation of allogeneic T cells (from controls, N = 7) induced by MDDCs from P1 or healthy donors (HDs). Representative CFSE histograms are shown on the right (DC:T 1:2). Each dot represents one allogeneic pairing. See also ( and ). Two-way ANOVA tests with Tukey’s correction were used in (A), (B), (D), and (E). Mann-Whitney tests with Holm-Šidák correction were used in (C) and (F). * P < 0.05 and ** P < 0.01. MHC, major histocompatibility complex.

Journal: Science immunology

Article Title: Human LFA-1 governs T cell immune surveillance of the skin

doi: 10.1126/sciimmunol.adz8360

Figure Lengend Snippet: Proliferation of T cells from patients ( N = 6), TC ( N = 8), and local controls (LC; N = 6), assessed by CFSE dilution after 5 days of anti-CD3/CD28 stimulation. ( B ) Cytokine production by memory T cells from patients ( N = 6), TC ( N = 8), and LC ( N = 6) after 24-hour anti-CD3/CD28 stimulation, assessed by flow cytometry. ( C ) Cytokine production by CLA + (skin-tropic) and CLA − memory CD4 T cells from patients ( N = 6) and controls ( N = 14). Cytokines secreted by PBMCs from patients ( N = 6), TC ( N = 6), and LC ( N = 6) after 24-hour anti-CD3/CD28 stimulation, measured by LEGENDplex. Proliferation of αL-deficient T cells (from patients) cocultured with allogeneic MDDCs at the indicated ratios. Representative CFSE histograms are shown on the right (DC:T 1:2). Each dot represents one allogeneic pairing (LC, N = 10; TC, N = 8; P, N = 6). See also ( to ). Proliferation of allogeneic T cells (from controls, N = 7) induced by MDDCs from P1 or healthy donors (HDs). Representative CFSE histograms are shown on the right (DC:T 1:2). Each dot represents one allogeneic pairing. See also ( and ). Two-way ANOVA tests with Tukey’s correction were used in (A), (B), (D), and (E). Mann-Whitney tests with Holm-Šidák correction were used in (C) and (F). * P < 0.05 and ** P < 0.01. MHC, major histocompatibility complex.

Article Snippet: Data were analyzed with LEGENDplex Cloud-based Data Analysis Software (Qognit).

Techniques: Flow Cytometry, MANN-WHITNEY, Immunopeptidomics