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classification and regression trees (cart) module  (Salford Systems)

 
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    Salford Systems classification and regression trees (cart) module
    Classification And Regression Trees (Cart) Module, supplied by Salford Systems, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/classification/classification+and+regression+tree++cart+/pmc05338693-108-5-14
    Average 90 stars, based on 1 article reviews
    classification and regression trees (cart) module - by Bioz Stars, 2026-10
    90/100 stars

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    other:

    Article Title: Combined Low Densities of FoxP3+ and CD3+ Tumor-Infiltrating Lymphocytes Identify Stage II Colorectal Cancer at High Risk of Progression
    Article Snippet: Classification and regression tree (CART) modeled (Salford Systems, San Diego, CA, USA) by entering patient demographics, tumor pathological features (including MS status), as well as densities of FoxP3 + and CD3 + TILs.

    Article Title: Characterization of Diarrheagenic Enteroaggregative Escherichia coli in Danish Adults—Antibiotic Treatment Does Not Reduce Duration of Diarrhea
    Article Snippet: We utilized the classification and regression tree (CART) Pro Version 6.0 (Salford Systems) software inputting factors of interest as binary (present/absent, yes/no) independent predictive variables along with a continuous “factor total” that was a sum of all factors.

    Article Title: The functions and factors governing fungal communities and diversity in agricultural waters: insights into the ecosystem services aquatic mycobiota provide
    Article Snippet: For exploratory analysis, classification and regression tree (CART) analysis (Salford Systems, San Diego, CA, United States) was used to investigate fungicide associations with Shannon and Simpson diversity indices and fungal genera abundances.

    Article Title: Higher order genes interaction in DNA repair and cytokine genes polymorphism and risk to lung cancer in North Indians
    Article Snippet: Classification and regression tree analysis The tree construction based on the classification and regression tree (CART) model was performed on CART software (version 6.0, Salford Systems, San Diego, California, USA) using gene– gene and gene–environment factors [Figure 8a and b].

    Article Title: Septic shock endotyping strategy and mortality risk for clinical application
    Article Snippet: Gene Symbol Description ADGRE3 adhesion G protein-coupled receptor E3 ANLN anillin actin binding protein ANPEP alanyl aminopeptidase, membrane CASS4 Cas scaffolding protein family member 4 CCL3L1 C-C motif chemokine ligand 3 like 1 CCNB1 cyclin B1 CCNB2 cyclin B2 CD24 CD24 molecule CD302 CD302 molecule CD69 CD69 molecule CD86 CD86 molecule CDK1 cyclin dependent kinase 1 CEACAM8 carcinoembryonic antigen related cell adhesion molecule 8 CEP55 centrosomal protein 55 CKS2 CDC28 protein kinase regulatory subunit 2 CLEC5A C-type lectin domain family 5 member A CLEC7A C-type lectin domain family 7 member A CPVL carboxypeptidase, vitellogenic like CREB5 cAMP responsive element binding protein 5 CX3CR1 C-X3-C motif chemokine receptor 1 DDIT4 DNA damage inducible transcript 4 DDX3Y DEAD-box helicase 3, Y-linked DGAT2 diacylglycerol 0-acyltransferase 2 DNAJC3 DnaJ heat shock protein family (Hsp40) member C3 F5 coagulation factor V FABP5 fatty acid binding protein 5 FAM157C family with sequence similarity 157 member C FGL2 fibrinogen like 2 FRY FRY microtubule binding protein FYB FYN binding protein GOS2 G0/G1 switch 2 GLIPRI GLI pathogenesis related 1 GPR171 G protein-coupled receptor 171 HAL histidine ammonia-lyase HSPH1 heat shock protein family H (Hsp110) member 1 KDM5D lysine demethylase 5D KIF11 kinesin family member 11 KREMEN1 kringle containing transmembrane protein 1 KRT23 keratin 23 MAFF MAF bZIP transcription factor F MANSC1 MANSC domain containing 1 MME membrane metallo-endopeptidase MT1M metallothionein 1M NDC80 NDC80, kinetochore complex component NKG7 natural killer cell granule protein 7 NUMB NUMB, endocytic adaptor protein NUSAP1 nucleolar and spindle associated protein 1 ORM1 orosomucoid 1 PLXNC1 plexin Cl PRC1 protein regulator of cytokinesis 1 PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha RGS1 regulator of G-protein signaling 1 RGS2 regulator of G-protein signaling 2 RNF182 ring finger protein 182 RNF24 ring finger protein 24 RPS4Y1 ribosomal protein S4, Y-linked 1 SLC39A8 solute carrier family 39 member 8 SLC8A1 solute carrier family 8 member Al SULF2 sulfatase 2 TGFBI transforming growth factor beta induced TLR6 toll like receptor 6 TNFRSF10C TNF receptor superfamily member 10c TOP2A topoisomerase (DNA) II alpha TTK TTK protein kinase TYMS thymidylate synthetase USP9Y ubiquitin specific peptidase 9, Y-linked WLS wntless Wnt ligand secretion mediator ZWINT ZW10 interacting kinetochore protein Procedures for Deriving PERSEVERE-XP Consistent with the previous approach to deriving PERSEVERE, Classification and Regression Tree (CART) methodology was used to derive PERSEVERE-XP (Salford Predictive Modeler v8.0, Salford Systems, San Diego, Calif.) (14, 15, 28, 30).

    Article Title: Septic shock endotyping strategy and mortality risk for clinical application
    Article Snippet: Gene Symbol Description ADGRE3 adhesion G protein-coupled receptor E3 ANLN anillin actin binding protein ANPEP alanyl aminopeptidase, membrane CASS4 Cas scaffolding protein family member 4 CCL3L1 C-C motif chemokine ligand 3 like 1 CCNB1 cyclin B1 CCNB2 cyclin B2 CD24 CD24 molecule CD302 CD302 molecule CD69 CD69 molecule CD86 CD86 molecule CDK1 cyclin dependent kinase 1 CEACAM8 carcinoembryonic antigen related cell adhesion molecule 8 CEP55 centrosomal protein 55 CKS2 CDC28 protein kinase regulatory subunit 2 CLEC5A C-type lectin domain family 5 member A CLEC7A C-type lectin domain family 7 member A CPVL carboxypeptidase, vitellogenic like CREB5 cAMP responsive element binding protein 5 CX3CR1 C-X3-C motif chemokine receptor 1 DDIT4 DNA damage inducible transcript 4 DDX3Y DEAD-box helicase 3, Y-linked DGAT2 diacylglycerol 0-acyltransferase 2 DNAJC3 DnaJ heat shock protein family (Hsp40) member C3 F5 coagulation factor V FABP5 fatty acid binding protein 5 FAM157C family with sequence similarity 157 member C FGL2 fibrinogen like 2 FRY FRY microtubule binding protein FYB FYN binding protein GOS2 GO/G1 switch 2 GLIPRI GLI pathogenesis related 1 GPR171 G protein-coupled receptor 171 HAL histidine ammonia-lyase HSPH1 heat shock protein family H (Hsp110) member 1 KDM5D lysine demethylase 5D KIF11 kinesin family member 11 KREMEN1 kringle containing transmembrane protein 1 KRT23 keratin 23 MAFF MAF bZIP transcription factor F MANSC1 MANSC domain containing 1 MME membrane metallo-endopeptidase MT1M metallothionein 1M NDC80 NDC80, kinetochore complex component NKG7 natural killer cell granule protein 7 NUMB NUMB, endocytic adaptor protein NUSAP1 nucleolar and spindle associated protein 1 ORM1 orosomucoid 1 PLXNC1 plexin C1 PRC1 protein regulator of cytokinesis 1 PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha RGS1 regulator of G-protein signaling 1 RGS2 regulator of G-protein signaling 2 RNF182 ring finger protein 182 RNF24 ring finger protein 24 RPS4Y1 ribosomal protein S4, Y-linked 1 SLC39A8 solute carrier family 39 member 8 SLC8A1 solute carrier family 8 member A1 SULF2 sulfatase 2 TGFBI transforming growth factor beta induced TLR6 toll like receptor 6 TNFRSF10C TNF receptor superfamily member 10c TOP2A topoisomerase (DNA) II alpha TTK TTK protein kinase TYMS thymidylate synthetase USP9Y ubiquitin specific peptidase 9, Y-linked WLS wntless Wnt ligand secretion mediator ZWINT ZW10 interacting kinetochore protein Procedures for Deriving PERSEVERE-XP Consistent with the previous approach to deriving PERSEVERE, Classification and Regression Tree (CART) methodology was used to derive PERSEVERE-XP (Salford Predictive Modeler v8.0, Salford Systems, San Diego, Calif.) (14, 15, 28, 30).

    Software:

    Article Title: Helicobacter pylori cagE, cagG, and cagM can be a prognostic marker for intestinal and diffuse gastric cancer.
    Article Snippet: This is a PDF file of an article that has undergone enhancements after acceptance, such as the addition of a cover page and metadata, and formatting for readability, but it is not yet the definitive version of record.. This version will undergo additional copyediting, typesetting and review before it is published in its final form, but we are providing this version to give early visibility of the article.. Please note that, during the production process, errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain.

    Article Title: Virulence-Related Genes and Coenteropathogens Associated with Clinical Outcomes of Enteropathogenic Escherichia coli Infections in Children from the Brazilian Semiarid Region: a Case-Control Study of Diarrhea
    Article Snippet: .. 197 In order to evaluate the correlations of VRG combinations with clinical 198 parameters, the Classification and Regression Tree (CART software, pro version 6.0; 199 Salford Systems, San Diego, CA) was used (23,24). ..



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    Coronal Plane Alignment of the Knee (CPAK) classification with nine theoretical knee types. Source : Adapted from MacDessi et al. . aHKA, arithmetic hip–knee–ankle angle; HKA, hip–knee–ankle angle; JLO, joint line obliquity; LDFA, lateral distal femoral angle; MPTA, medial proximal tibial angle.

    Journal: Journal of Experimental Orthopaedics

    Article Title: Speaking the same language? A direct cartography between functional knee phenotypes and CPAK

    doi: 10.1002/jeo2.70801

    Figure Lengend Snippet: Coronal Plane Alignment of the Knee (CPAK) classification with nine theoretical knee types. Source : Adapted from MacDessi et al. . aHKA, arithmetic hip–knee–ankle angle; HKA, hip–knee–ankle angle; JLO, joint line obliquity; LDFA, lateral distal femoral angle; MPTA, medial proximal tibial angle.

    Article Snippet: The present study aimed to establish a theoretical mapping between the FKP described by Hirschmann and the CPAK classification by analytically deriving the arithmetic HKA angle and JLO from FMA and TMA.

    Techniques:

    Deterministic mapping between functional knee phenotypes (FMA mean = x ‐coordinate − TMA mean = y ‐coordinate) and CPAK classification femoral. The x ‐axis represents the femoral mechanical angle (FMA): values to the left (FMA < 93°) correspond to varus femoral orientation, values to the right (FMA > 93°) to valgus femoral orientation. The y ‐axis represents the tibial mechanical angle (TMA): values below (TMA < 87°) correspond to varus tibial orientation, values above (TMA > 87°) to valgus tibial orientation. Population means (FMA = 93°, TMA = 87°) serve as phenotypic neutrality references per the Hirschmann classification. CPAK, Coronal Plane Alignment of the Knee.

    Journal: Journal of Experimental Orthopaedics

    Article Title: Speaking the same language? A direct cartography between functional knee phenotypes and CPAK

    doi: 10.1002/jeo2.70801

    Figure Lengend Snippet: Deterministic mapping between functional knee phenotypes (FMA mean = x ‐coordinate − TMA mean = y ‐coordinate) and CPAK classification femoral. The x ‐axis represents the femoral mechanical angle (FMA): values to the left (FMA < 93°) correspond to varus femoral orientation, values to the right (FMA > 93°) to valgus femoral orientation. The y ‐axis represents the tibial mechanical angle (TMA): values below (TMA < 87°) correspond to varus tibial orientation, values above (TMA > 87°) to valgus tibial orientation. Population means (FMA = 93°, TMA = 87°) serve as phenotypic neutrality references per the Hirschmann classification. CPAK, Coronal Plane Alignment of the Knee.

    Article Snippet: The present study aimed to establish a theoretical mapping between the FKP described by Hirschmann and the CPAK classification by analytically deriving the arithmetic HKA angle and JLO from FMA and TMA.

    Techniques: Functional Assay

    Correspondence between functional knee phenotypes and CPAK types across femoral (FMA = x ‐coordinate) and tibial (TMA = y ‐coordinate) mechanical angle intervals. Each functional phenotype corresponds to a 3° angular interval, defined as ± 1.5° around the central femoral (FMA) and tibial (TMA) mechanical angle values. The table illustrates the theoretical mapping between these FMA–TMA intervals and the CPAK classification. When the angular interval of a phenotype intersects several CPAK regions, multiple CPAK types are listed within the same cell. CPAK, Coronal Plane Alignment of the Knee.

    Journal: Journal of Experimental Orthopaedics

    Article Title: Speaking the same language? A direct cartography between functional knee phenotypes and CPAK

    doi: 10.1002/jeo2.70801

    Figure Lengend Snippet: Correspondence between functional knee phenotypes and CPAK types across femoral (FMA = x ‐coordinate) and tibial (TMA = y ‐coordinate) mechanical angle intervals. Each functional phenotype corresponds to a 3° angular interval, defined as ± 1.5° around the central femoral (FMA) and tibial (TMA) mechanical angle values. The table illustrates the theoretical mapping between these FMA–TMA intervals and the CPAK classification. When the angular interval of a phenotype intersects several CPAK regions, multiple CPAK types are listed within the same cell. CPAK, Coronal Plane Alignment of the Knee.

    Article Snippet: The present study aimed to establish a theoretical mapping between the FKP described by Hirschmann and the CPAK classification by analytically deriving the arithmetic HKA angle and JLO from FMA and TMA.

    Techniques: Functional Assay

    Distribution of functional knee phenotypes according to the Hirschmann and MacDessi (CPAK) classifications in osteoarthritic (OA) and non‐osteoarthritic (NO) populations. CPAK distributions obtained from the Hirschmann functional phenotype cohort are compared with those reported in the original CPAK cohort (MacDessi) in NO and OA populations. Four attribution strategies were applied: mean, using the central FMA and TMA values; interval, considering the full angular ranges (±1.5°) of each phenotype; stochastic, using Monte Carlo sampling within these intervals; and rare, selecting CPAK types located at the margins of the compatible aHKA–JLO space. aHKA, arithmetic hip–knee–ankle angle; CPAK, Coronal Plane Alignment of the Knee; FMA, femoral mechanical angle; JLO, joint line obliquity; TMA, total knee arthroplasty.

    Journal: Journal of Experimental Orthopaedics

    Article Title: Speaking the same language? A direct cartography between functional knee phenotypes and CPAK

    doi: 10.1002/jeo2.70801

    Figure Lengend Snippet: Distribution of functional knee phenotypes according to the Hirschmann and MacDessi (CPAK) classifications in osteoarthritic (OA) and non‐osteoarthritic (NO) populations. CPAK distributions obtained from the Hirschmann functional phenotype cohort are compared with those reported in the original CPAK cohort (MacDessi) in NO and OA populations. Four attribution strategies were applied: mean, using the central FMA and TMA values; interval, considering the full angular ranges (±1.5°) of each phenotype; stochastic, using Monte Carlo sampling within these intervals; and rare, selecting CPAK types located at the margins of the compatible aHKA–JLO space. aHKA, arithmetic hip–knee–ankle angle; CPAK, Coronal Plane Alignment of the Knee; FMA, femoral mechanical angle; JLO, joint line obliquity; TMA, total knee arthroplasty.

    Article Snippet: The present study aimed to establish a theoretical mapping between the FKP described by Hirschmann and the CPAK classification by analytically deriving the arithmetic HKA angle and JLO from FMA and TMA.

    Techniques: Functional Assay, Sampling

    Hirschmann‐CPAK (HCT‐9) reading grid. CPAK, Coronal Plane Alignment of the Knee; FMA, femoral mechanical angle; HCT‐9, Hirschmann–CPAK Translational grid; TMA, tibial mechanical angle.

    Journal: Journal of Experimental Orthopaedics

    Article Title: Speaking the same language? A direct cartography between functional knee phenotypes and CPAK

    doi: 10.1002/jeo2.70801

    Figure Lengend Snippet: Hirschmann‐CPAK (HCT‐9) reading grid. CPAK, Coronal Plane Alignment of the Knee; FMA, femoral mechanical angle; HCT‐9, Hirschmann–CPAK Translational grid; TMA, tibial mechanical angle.

    Article Snippet: The present study aimed to establish a theoretical mapping between the FKP described by Hirschmann and the CPAK classification by analytically deriving the arithmetic HKA angle and JLO from FMA and TMA.

    Techniques: