image processing software celltracker  (MathWorks Inc)

Journal: eLife

Article Title: Condensation tendency and planar isotropic actin gradient induce radial alignment in confined monolayers

doi: 10.7554/eLife.60381

Figure Lengend Snippet: ( A ) The top view and side view of REF 2c labeled with CellTracker-Green dye at 24 hr and 48 hr. Scale bar, 100 μm. ( B ) Zoomed side view of REF 2c labeled with CellTracker-Green dye at 24 hr and 48 hr. Scale bar, 10 μm. ( C ) Bar plot showing the tissue thickness at 24 hr ( n = 12) and 48 hr ( n = 12). **, p < 0.01. ( D ) Plot showing the mean thickness across the REF colony at 24 hr ( n = 12) and 48 hr ( n = 12).

Article Snippet: To analyze cell migration, individual cell positions were manually tracked using CellTracker software ( ) implemented in MATLAB (MATLAB R2020a, MathWorks).

Techniques: Labeling

Journal: bioRxiv

Article Title: Macrophage-specific NF-κB activation dynamics can segregate inflammatory bowel disease patients

doi: 10.1101/535096

Figure Lengend Snippet: Time-lapse Confocal imaging of NF-κB nuclear translocation in Lipid A-stimulated human PBMDMs. (A) PBMC-derived macrophages from human subjects were transduced with a fluorescent lentiviral p65AmCyan construct and were used to image NF-κB p65 subunit cellular dynamics in real-time. (B) CellTracker was used to generate profiles of nuclear translocation of transduced cells post stimulation with 200ng/mL Lipid A, over 3h: Asterisks (*) indicate nuclear localization of p65 at 66 and 93 min (‘). (C-E) Graphs of individual nuclear translocation profiles of responding cells in the healthy controls, Crohn’s disease (CD) and ulcerative colitis (UC) groups; mean ± SD for all responsive cells shown in blue, red and green colour lines for each group, respectively. (F) The proportion of responding cells was calculated by pooling all tracked cells from each disease group; *p<0.05; two-sided Fisher’s exact test (by summation). Peak identification and analysis revealed in each population the peak time (G), peak amplitude (H) and peak width (I): *p<0.05, ***p<0.001; statistical differences assessed by Kruskal Wallis test with pairwise comparison of all three groups.

Article Snippet: Cells were imaged using a Zeiss LSM880 confocal microscope system equipped with a cell incubation unit maintained at 37 ° C, in a humidified atmosphere of 5% CO 2 . p65-AmCyan nuclear fluorescence was detected (excitation λ 458nm, emission λ 489nm) and quantified using CellTracker software ( ).

Techniques: Imaging, Translocation Assay, Derivative Assay, Transduction, Construct, Comparison