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cardiomyocytes  (Selleck Chemicals)


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    Structured Review

    Selleck Chemicals cardiomyocytes
    Fig. 1 The expression of DEF6 is increased in hypertrophic hearts and <t>cardiomyocytes.</t> A mRNA levels of DEF6 in the LV myocardium of mice subjected to sham or 4 weeks of TAC surgery (n = 5). B Immunoblot analyses (left) and results of quantification (right) of DEF6 protein expression in the LV myocardium of mice subjected to sham or 4 weeks of TAC surgery (n = 4). C mRNA levels of DEF6 in NRCMs administrated with PBS or 24 h of PE (50 μM) (n = 5). D Immunoblot analyses (left) and results of quantification (right) of DEF6 protein expression in NRCMs administrated with PBS or 24 h of PE (n = 4). *P < 0.05, ***P < 0.001 vs. sham or PBS. Data are displayed as mean ± SD. Statistical analysis were conducted by two-tailed Student’s t test (A, C) or Mann–Whitney U test (B, D).
    Cardiomyocytes, supplied by Selleck Chemicals, used in various techniques. Bioz Stars score: 94/100, based on 122 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cell+transcriptomic+sequencing+dataset/NSC+23766/pm37524688-254-73-85
    Average 94 stars, based on 122 article reviews
    cardiomyocytes - by Bioz Stars, 2026-11
    94/100 stars

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    1) Product Images from "DEF6(differentially exprehomolog) exacerbates pathological cardiac hypertrophy via RAC1."

    Article Title: DEF6(differentially exprehomolog) exacerbates pathological cardiac hypertrophy via RAC1.

    Journal: Cell death & disease

    doi: 10.1038/s41419-023-05948-0

    Fig. 1 The expression of DEF6 is increased in hypertrophic hearts and cardiomyocytes. A mRNA levels of DEF6 in the LV myocardium of mice subjected to sham or 4 weeks of TAC surgery (n = 5). B Immunoblot analyses (left) and results of quantification (right) of DEF6 protein expression in the LV myocardium of mice subjected to sham or 4 weeks of TAC surgery (n = 4). C mRNA levels of DEF6 in NRCMs administrated with PBS or 24 h of PE (50 μM) (n = 5). D Immunoblot analyses (left) and results of quantification (right) of DEF6 protein expression in NRCMs administrated with PBS or 24 h of PE (n = 4). *P < 0.05, ***P < 0.001 vs. sham or PBS. Data are displayed as mean ± SD. Statistical analysis were conducted by two-tailed Student’s t test (A, C) or Mann–Whitney U test (B, D).
    Figure Legend Snippet: Fig. 1 The expression of DEF6 is increased in hypertrophic hearts and cardiomyocytes. A mRNA levels of DEF6 in the LV myocardium of mice subjected to sham or 4 weeks of TAC surgery (n = 5). B Immunoblot analyses (left) and results of quantification (right) of DEF6 protein expression in the LV myocardium of mice subjected to sham or 4 weeks of TAC surgery (n = 4). C mRNA levels of DEF6 in NRCMs administrated with PBS or 24 h of PE (50 μM) (n = 5). D Immunoblot analyses (left) and results of quantification (right) of DEF6 protein expression in NRCMs administrated with PBS or 24 h of PE (n = 4). *P < 0.05, ***P < 0.001 vs. sham or PBS. Data are displayed as mean ± SD. Statistical analysis were conducted by two-tailed Student’s t test (A, C) or Mann–Whitney U test (B, D).

    Techniques Used: Expressing, Western Blot, Two Tailed Test, MANN-WHITNEY

    Fig. 2 Ablation of DEF6 mitigates TAC-induced cardiac hypertrophy. A Strategy to construct KO mice and the sequencing results of WT and KO mice. B Protein levels of cardiac DEF6 in WT and KO mice (n = 5). C Comparisons of HW, HW/BW, LW/BW, and HW/TL in WT and KO mice subjected to sham or 4 weeks of TAC surgery (n = 10). D Left, gross hearts and H&E-stained LV sections of each groups. Scale bars, 0.3 cm and 50 μm, respectively. Right, Comparisons of cardiomyocyte cross-sectional area from groups (n = 6). E RT-PCR analyses of the hypertrophic markers in the indicated groups (n = 4). F–H Comparisons of the LVEDd, LVESd, LVPWd, FS, and EF values in WT and KO mice subjected to sham or 4 weeks of TAC surgery (n = 10). I Left, PSR-stained LV sections in WT and KO mice subjected to sham or 4 weeks of TAC surgery. Scale bars, 50 μm. Right, comparisons of LV collagen volume between groups (n = 6). J RT-PCR analysis of the fibrotic markers in each groups (n = 4). *P < 0.05, **P < 0.01, ***P < 0.001 vs. WT sham, #P < 0.05, ##P < 0.01, ###P < 0.001 vs. WT TAC. Data are displayed as mean ± SD. Statistical analysis were conducted by One-way ANOVA (C, D, F–I) or Kruskal–Wallis test (E, J).
    Figure Legend Snippet: Fig. 2 Ablation of DEF6 mitigates TAC-induced cardiac hypertrophy. A Strategy to construct KO mice and the sequencing results of WT and KO mice. B Protein levels of cardiac DEF6 in WT and KO mice (n = 5). C Comparisons of HW, HW/BW, LW/BW, and HW/TL in WT and KO mice subjected to sham or 4 weeks of TAC surgery (n = 10). D Left, gross hearts and H&E-stained LV sections of each groups. Scale bars, 0.3 cm and 50 μm, respectively. Right, Comparisons of cardiomyocyte cross-sectional area from groups (n = 6). E RT-PCR analyses of the hypertrophic markers in the indicated groups (n = 4). F–H Comparisons of the LVEDd, LVESd, LVPWd, FS, and EF values in WT and KO mice subjected to sham or 4 weeks of TAC surgery (n = 10). I Left, PSR-stained LV sections in WT and KO mice subjected to sham or 4 weeks of TAC surgery. Scale bars, 50 μm. Right, comparisons of LV collagen volume between groups (n = 6). J RT-PCR analysis of the fibrotic markers in each groups (n = 4). *P < 0.05, **P < 0.01, ***P < 0.001 vs. WT sham, #P < 0.05, ##P < 0.01, ###P < 0.001 vs. WT TAC. Data are displayed as mean ± SD. Statistical analysis were conducted by One-way ANOVA (C, D, F–I) or Kruskal–Wallis test (E, J).

    Techniques Used: Construct, Sequencing, Staining, Reverse Transcription Polymerase Chain Reaction

    Fig. 3 Overexpression of DEF6 aggravates TAC-induced cardiac hypertrophy. A mmunoblot analyses (left) and results of quantification (right) of DEF6 protein expression in the hearts of mice injected with AAV9-vector or AAV9-DEF6 (n = 4). B Comparisons of HW, HW/BW, LW/ BW, and HW/TL in AAV9-vector- and AAV9-DEF6-infected mice subjected to sham or 4 weeks of TAC surgery (n = 10). C Left, gross hearts and H&E-stained LV sections of each groups. Scale bars, 0.3 cm and 50 μm, respectively. Right, Comparisons of cardiomyocyte cross-sectional area between groups (n = 6). D RT-PCR analyses of the hypertrophic markers in each groups (n = 4). E–G Comparisons of LVEDd, LVESd, LVPWd, FS, and EF in AAV9-vector- and AAV9-DEF6-infected mice subjected to sham or 4 weeks of TAC surgery (n = 10). H Left, PSR-stained LV sections in AAV9-vector- and AAV9-DEF6-infected mice subjected to sham or 4 weeks of TAC surgery. Scale bars, 50 μm. Right, comparisons of LV collagen volume between groups (n = 6). I RT-PCR analyses of the fibrotic markers in each groups (n = 4). *P < 0.05, **P < 0.01, ***P < 0.001 vs. AAV9- vector or AAV9-vector sham, #P < 0.05, ##P < 0.01, ###P < 0.001 vs. AAV9-vector TAC. Data are displayed as mean ± SD. Statistical analysis were conducted by Mann–Whitney U test (A) or One-way ANOVA (B, C, E–H) or Kruskal–Wallis test (D, I).
    Figure Legend Snippet: Fig. 3 Overexpression of DEF6 aggravates TAC-induced cardiac hypertrophy. A mmunoblot analyses (left) and results of quantification (right) of DEF6 protein expression in the hearts of mice injected with AAV9-vector or AAV9-DEF6 (n = 4). B Comparisons of HW, HW/BW, LW/ BW, and HW/TL in AAV9-vector- and AAV9-DEF6-infected mice subjected to sham or 4 weeks of TAC surgery (n = 10). C Left, gross hearts and H&E-stained LV sections of each groups. Scale bars, 0.3 cm and 50 μm, respectively. Right, Comparisons of cardiomyocyte cross-sectional area between groups (n = 6). D RT-PCR analyses of the hypertrophic markers in each groups (n = 4). E–G Comparisons of LVEDd, LVESd, LVPWd, FS, and EF in AAV9-vector- and AAV9-DEF6-infected mice subjected to sham or 4 weeks of TAC surgery (n = 10). H Left, PSR-stained LV sections in AAV9-vector- and AAV9-DEF6-infected mice subjected to sham or 4 weeks of TAC surgery. Scale bars, 50 μm. Right, comparisons of LV collagen volume between groups (n = 6). I RT-PCR analyses of the fibrotic markers in each groups (n = 4). *P < 0.05, **P < 0.01, ***P < 0.001 vs. AAV9- vector or AAV9-vector sham, #P < 0.05, ##P < 0.01, ###P < 0.001 vs. AAV9-vector TAC. Data are displayed as mean ± SD. Statistical analysis were conducted by Mann–Whitney U test (A) or One-way ANOVA (B, C, E–H) or Kruskal–Wallis test (D, I).

    Techniques Used: Over Expression, Expressing, Injection, Plasmid Preparation, Infection, Staining, Reverse Transcription Polymerase Chain Reaction, MANN-WHITNEY

    Fig. 4 DEF6 exacerbates PE-induced cardiomyocyte hypertrophy. A Immunoblot analyses (left) and results of quantification (right) of DEF6 protein expression in cultured NRCMs infected with AdshRNA or AdshDEF6 (n = 3). B Left, immunofluorescence staining (α-actinin, red) in cultured NRCMs infected with AdshRNA or AdshDEF6 and administrated with PBS or 24 h of PE. Scale bar, 20 μm. Right, comparisons of the cardiomyocyte surface areas in cultured NRCVs of each groups (n ≥48 cells per group). C RT-PCR analysis of the hypertrophic markers in cultured NRCVs of each groups (n = 3). D Immunoblot analyses (left) and results of quantification (right) of DEF6 protein expression in cultured NRCVs infected with Advector or AdDEF6 (n = 3). E Left, immunofluorescence staining (α-actinin, red) in cultured NRCMs infected with Advector or AdDEF6 and administrated with PBS or 24 h of PE. Scale bar, 20 μm. Right, comparisons of the cardiomyocyte surface areas in cultured NRCVs of each groups (n ≥48 cells per group). F RT-PCR analyses of the hypertrophic markers in cultured NRCVs of each groups (n = 3). *P < 0.05, **P < 0.01, ***P < 0.001 vs. AdshRNA or AdshRNA PBS or Advector or Advector PBS, #P < 0.05, ##P < 0.01, ###P < 0.001 vs. AdshRNA PE or Advector PE. Data are displayed as mean ± SD. Statistical analysis were conducted by two-tailed Mann–Whitney U test (A, D) or One-way ANOVA (B, E) or Kruskal–Wallis test (C, F).
    Figure Legend Snippet: Fig. 4 DEF6 exacerbates PE-induced cardiomyocyte hypertrophy. A Immunoblot analyses (left) and results of quantification (right) of DEF6 protein expression in cultured NRCMs infected with AdshRNA or AdshDEF6 (n = 3). B Left, immunofluorescence staining (α-actinin, red) in cultured NRCMs infected with AdshRNA or AdshDEF6 and administrated with PBS or 24 h of PE. Scale bar, 20 μm. Right, comparisons of the cardiomyocyte surface areas in cultured NRCVs of each groups (n ≥48 cells per group). C RT-PCR analysis of the hypertrophic markers in cultured NRCVs of each groups (n = 3). D Immunoblot analyses (left) and results of quantification (right) of DEF6 protein expression in cultured NRCVs infected with Advector or AdDEF6 (n = 3). E Left, immunofluorescence staining (α-actinin, red) in cultured NRCMs infected with Advector or AdDEF6 and administrated with PBS or 24 h of PE. Scale bar, 20 μm. Right, comparisons of the cardiomyocyte surface areas in cultured NRCVs of each groups (n ≥48 cells per group). F RT-PCR analyses of the hypertrophic markers in cultured NRCVs of each groups (n = 3). *P < 0.05, **P < 0.01, ***P < 0.001 vs. AdshRNA or AdshRNA PBS or Advector or Advector PBS, #P < 0.05, ##P < 0.01, ###P < 0.001 vs. AdshRNA PE or Advector PE. Data are displayed as mean ± SD. Statistical analysis were conducted by two-tailed Mann–Whitney U test (A, D) or One-way ANOVA (B, E) or Kruskal–Wallis test (C, F).

    Techniques Used: Western Blot, Expressing, Cell Culture, Infection, Staining, Reverse Transcription Polymerase Chain Reaction, Two Tailed Test, MANN-WHITNEY

    Fig. 6 Prohypertrophic effect of DEF6 depends on Rac1-MEK-ERK signaling. A Co-IP of DEF6 was performed with anti-Flag and probed by Western blots with anti-HA (left); Co-IP of Rac1 was performed with anti-HA and probed by Western blots with anti-Flag (right). B In vitro GST pulldown assays for the interaction of purified Flag-DEF6 and GST-HA-Rac1 (left), as well as Flag-Rac1 and GST-HA-DEF6 (right). C The activity of Rac1 changes in the same direction as the DEF6 expression. D Immunoblot analyses of total and activated MEK1/2, ERK1/2 in cultured NRCMs infected with Advector or AdDEF6 and treated with PBS or NSC23766 (50 μM, 24 h) under 24 h of PE treatment (50 μM) (n = 3). E Immunofluorescence staining (α-actinin, red) (left) and comparison of cardiomyocyte surface areas (right) of NRCMs infected with Advector and AdDEF6 and treated with PBS or NSC23766 (50 μM, 24 h) under 24 h of PE treatment (50 μM). (n ≥48 cells per group). F RT-PCR analysis of the hypertrophic markers in cultured NRCVs of each groups (n = 3). G Immunoblot analyses of total and activated MEK1/2, ERK1/2 in cultured NRCMs infected with AdshRNA or AdshDEF6 and with Adcontrol or AdRac1(G12V) under PE 24 h of PE treatment (50 μM) (n = 3). H Immunofluorescence staining (α-actinin, red) (left) and comparison of cardiomyocyte surface areas (right) of NRCMs infected with the indicated adenovirus and administrated with 24 h of PE (50 μM) (n ≥48 cells per group). I RT-PCR analysis of the hypertrophic markers in cultured NRCVs of each groups (n = 3). •P < 0.05, P < 0.01,•P < 0.001 vs. Advector PBS PE or AdshRNA Adcontrol PE, *P < 0.05, **P < 0.01, ***P < 0.001 vs. Advector PBS PE or AdshRNA Adcontrol PE, ###P < 0.001 vs. AdDEF6 PBS PE or AdshDEF6 Adcontrol PE, and n.s. indicates no significance. Data are displayed as mean ± SD. Statistical analysis were conducted by Kruskal–Wallis test.
    Figure Legend Snippet: Fig. 6 Prohypertrophic effect of DEF6 depends on Rac1-MEK-ERK signaling. A Co-IP of DEF6 was performed with anti-Flag and probed by Western blots with anti-HA (left); Co-IP of Rac1 was performed with anti-HA and probed by Western blots with anti-Flag (right). B In vitro GST pulldown assays for the interaction of purified Flag-DEF6 and GST-HA-Rac1 (left), as well as Flag-Rac1 and GST-HA-DEF6 (right). C The activity of Rac1 changes in the same direction as the DEF6 expression. D Immunoblot analyses of total and activated MEK1/2, ERK1/2 in cultured NRCMs infected with Advector or AdDEF6 and treated with PBS or NSC23766 (50 μM, 24 h) under 24 h of PE treatment (50 μM) (n = 3). E Immunofluorescence staining (α-actinin, red) (left) and comparison of cardiomyocyte surface areas (right) of NRCMs infected with Advector and AdDEF6 and treated with PBS or NSC23766 (50 μM, 24 h) under 24 h of PE treatment (50 μM). (n ≥48 cells per group). F RT-PCR analysis of the hypertrophic markers in cultured NRCVs of each groups (n = 3). G Immunoblot analyses of total and activated MEK1/2, ERK1/2 in cultured NRCMs infected with AdshRNA or AdshDEF6 and with Adcontrol or AdRac1(G12V) under PE 24 h of PE treatment (50 μM) (n = 3). H Immunofluorescence staining (α-actinin, red) (left) and comparison of cardiomyocyte surface areas (right) of NRCMs infected with the indicated adenovirus and administrated with 24 h of PE (50 μM) (n ≥48 cells per group). I RT-PCR analysis of the hypertrophic markers in cultured NRCVs of each groups (n = 3). •P < 0.05, P < 0.01,•P < 0.001 vs. Advector PBS PE or AdshRNA Adcontrol PE, *P < 0.05, **P < 0.01, ***P < 0.001 vs. Advector PBS PE or AdshRNA Adcontrol PE, ###P < 0.001 vs. AdDEF6 PBS PE or AdshDEF6 Adcontrol PE, and n.s. indicates no significance. Data are displayed as mean ± SD. Statistical analysis were conducted by Kruskal–Wallis test.

    Techniques Used: Co-Immunoprecipitation Assay, Western Blot, In Vitro, Activity Assay, Expressing, Cell Culture, Infection, Staining, Comparison, Reverse Transcription Polymerase Chain Reaction

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    Labeling:

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    Activation Assay:

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    Control:

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    Article Snippet: Dead cells were excluded by LIVE/DEAD Fixable Violet Dead Cell Stain Kit ( L34963 , Thermo Scientific).

    Article Title: Transendothelial migration of the Lyme disease spirochete involves spirochete internalization as an intermediate step through a transcellular pathway that involves Cdc42 and Rac1.
    Article Snippet: When indicated, the following inhibitors were used: LY294002 (S1105, Selleckchem), U0123 (9903, Cell Signaling), cilengitide trifluoroacetate (S7077, Selleckchem), filipin III from Streptomyces filipinensis (48049-9 Sigma-Aldrich), dynasore (304448-55-3, EMD Millipore), desatinib (BMS-354825, S1021, Selleckchem), 2-Fluoro-N-[2-(2-methyl-1Hindol-3-yl)ethyl]-benzamide ([CK-666], SML0006, Sigma-Aldrich), imipramine hydrochlor ide (I0899, Sigma-Aldrich), SB203580, 5-(N-ethyl-N-isopropyl) amiloride (1154-25-2, Sigma-Aldrich), ML141 (7120335-5, EMD Millipore), EHop-016 (S7319, Selleckchem) and NSC 23766 trihydrochloride (S8031, Selleckchem).

    Article Title: Transendothelial migration of the Lyme disease spirochete involves spirochete internalization as an intermediate step through a transcellular pathway that involves Cdc42 and Rac1
    Article Snippet: hTERT-immortalized dermal microvascular endothelial cell, neonatal (CRL4060, ATCC), was used.

    Article Title: Curcumin alleviates lipopolysaccharide-induced alveolar epithelial Glycocalyx damage by modulating the Rac1/NF-κB/HPSE pathway.
    Article Snippet: The glycocalyx, a cell surface component implicated in various diseases, has recently been recognized for its role in acute lung injury (ALI).. Also known as the alveolar epithelial polysaccharide coat, it is vital for maintaining lung barrier integrity, fluid homeostasis, and defense against pathogens.. This study investigated the protective effects and mechanisms of curcumin, a natural polyphenol, against lipopolysaccharide (LPS) -induced alveolar epithelial glycocalyx damage.

    Light Microscopy:

    Article Title: Fzd2 orchestrates canonical and non-canonical Wnt signaling to regulate lung development and fibrosis
    Article Snippet: Dead cells were excluded by LIVE/DEAD Fixable Violet Dead Cell Stain Kit ( L34963 , Thermo Scientific).

    Article Title: Transendothelial migration of the Lyme disease spirochete involves spirochete internalization as an intermediate step through a transcellular pathway that involves Cdc42 and Rac1.
    Article Snippet: When indicated, the following inhibitors were used: LY294002 (S1105, Selleckchem), U0123 (9903, Cell Signaling), cilengitide trifluoroacetate (S7077, Selleckchem), filipin III from Streptomyces filipinensis (48049-9 Sigma-Aldrich), dynasore (304448-55-3, EMD Millipore), desatinib (BMS-354825, S1021, Selleckchem), 2-Fluoro-N-[2-(2-methyl-1Hindol-3-yl)ethyl]-benzamide ([CK-666], SML0006, Sigma-Aldrich), imipramine hydrochlor ide (I0899, Sigma-Aldrich), SB203580, 5-(N-ethyl-N-isopropyl) amiloride (1154-25-2, Sigma-Aldrich), ML141 (7120335-5, EMD Millipore), EHop-016 (S7319, Selleckchem) and NSC 23766 trihydrochloride (S8031, Selleckchem).

    Article Title: Transendothelial migration of the Lyme disease spirochete involves spirochete internalization as an intermediate step through a transcellular pathway that involves Cdc42 and Rac1
    Article Snippet: hTERT-immortalized dermal microvascular endothelial cell, neonatal (CRL4060, ATCC), was used.

    Article Title: Curcumin alleviates lipopolysaccharide-induced alveolar epithelial Glycocalyx damage by modulating the Rac1/NF-κB/HPSE pathway.
    Article Snippet: The glycocalyx, a cell surface component implicated in various diseases, has recently been recognized for its role in acute lung injury (ALI).. Also known as the alveolar epithelial polysaccharide coat, it is vital for maintaining lung barrier integrity, fluid homeostasis, and defense against pathogens.. This study investigated the protective effects and mechanisms of curcumin, a natural polyphenol, against lipopolysaccharide (LPS) -induced alveolar epithelial glycocalyx damage.

    Enzyme-linked Immunosorbent Assay:

    Article Title: Fzd2 orchestrates canonical and non-canonical Wnt signaling to regulate lung development and fibrosis
    Article Snippet: Dead cells were excluded by LIVE/DEAD Fixable Violet Dead Cell Stain Kit ( L34963 , Thermo Scientific).

    Article Title: Transendothelial migration of the Lyme disease spirochete involves spirochete internalization as an intermediate step through a transcellular pathway that involves Cdc42 and Rac1.
    Article Snippet: When indicated, the following inhibitors were used: LY294002 (S1105, Selleckchem), U0123 (9903, Cell Signaling), cilengitide trifluoroacetate (S7077, Selleckchem), filipin III from Streptomyces filipinensis (48049-9 Sigma-Aldrich), dynasore (304448-55-3, EMD Millipore), desatinib (BMS-354825, S1021, Selleckchem), 2-Fluoro-N-[2-(2-methyl-1Hindol-3-yl)ethyl]-benzamide ([CK-666], SML0006, Sigma-Aldrich), imipramine hydrochlor ide (I0899, Sigma-Aldrich), SB203580, 5-(N-ethyl-N-isopropyl) amiloride (1154-25-2, Sigma-Aldrich), ML141 (7120335-5, EMD Millipore), EHop-016 (S7319, Selleckchem) and NSC 23766 trihydrochloride (S8031, Selleckchem).

    Article Title: Transendothelial migration of the Lyme disease spirochete involves spirochete internalization as an intermediate step through a transcellular pathway that involves Cdc42 and Rac1
    Article Snippet: hTERT-immortalized dermal microvascular endothelial cell, neonatal (CRL4060, ATCC), was used.

    Article Title: Curcumin alleviates lipopolysaccharide-induced alveolar epithelial Glycocalyx damage by modulating the Rac1/NF-κB/HPSE pathway.
    Article Snippet: The glycocalyx, a cell surface component implicated in various diseases, has recently been recognized for its role in acute lung injury (ALI).. Also known as the alveolar epithelial polysaccharide coat, it is vital for maintaining lung barrier integrity, fluid homeostasis, and defense against pathogens.. This study investigated the protective effects and mechanisms of curcumin, a natural polyphenol, against lipopolysaccharide (LPS) -induced alveolar epithelial glycocalyx damage.

    Quantitative RT-PCR:

    Article Title: Fzd2 orchestrates canonical and non-canonical Wnt signaling to regulate lung development and fibrosis
    Article Snippet: Dead cells were excluded by LIVE/DEAD Fixable Violet Dead Cell Stain Kit ( L34963 , Thermo Scientific).

    Article Title: Transendothelial migration of the Lyme disease spirochete involves spirochete internalization as an intermediate step through a transcellular pathway that involves Cdc42 and Rac1.
    Article Snippet: When indicated, the following inhibitors were used: LY294002 (S1105, Selleckchem), U0123 (9903, Cell Signaling), cilengitide trifluoroacetate (S7077, Selleckchem), filipin III from Streptomyces filipinensis (48049-9 Sigma-Aldrich), dynasore (304448-55-3, EMD Millipore), desatinib (BMS-354825, S1021, Selleckchem), 2-Fluoro-N-[2-(2-methyl-1Hindol-3-yl)ethyl]-benzamide ([CK-666], SML0006, Sigma-Aldrich), imipramine hydrochlor ide (I0899, Sigma-Aldrich), SB203580, 5-(N-ethyl-N-isopropyl) amiloride (1154-25-2, Sigma-Aldrich), ML141 (7120335-5, EMD Millipore), EHop-016 (S7319, Selleckchem) and NSC 23766 trihydrochloride (S8031, Selleckchem).

    Article Title: Transendothelial migration of the Lyme disease spirochete involves spirochete internalization as an intermediate step through a transcellular pathway that involves Cdc42 and Rac1
    Article Snippet: hTERT-immortalized dermal microvascular endothelial cell, neonatal (CRL4060, ATCC), was used.

    Article Title: Curcumin alleviates lipopolysaccharide-induced alveolar epithelial Glycocalyx damage by modulating the Rac1/NF-κB/HPSE pathway.
    Article Snippet: The glycocalyx, a cell surface component implicated in various diseases, has recently been recognized for its role in acute lung injury (ALI).. Also known as the alveolar epithelial polysaccharide coat, it is vital for maintaining lung barrier integrity, fluid homeostasis, and defense against pathogens.. This study investigated the protective effects and mechanisms of curcumin, a natural polyphenol, against lipopolysaccharide (LPS) -induced alveolar epithelial glycocalyx damage.

    MTT Assay:

    Article Title: Fzd2 orchestrates canonical and non-canonical Wnt signaling to regulate lung development and fibrosis
    Article Snippet: Dead cells were excluded by LIVE/DEAD Fixable Violet Dead Cell Stain Kit ( L34963 , Thermo Scientific).

    Article Title: Transendothelial migration of the Lyme disease spirochete involves spirochete internalization as an intermediate step through a transcellular pathway that involves Cdc42 and Rac1.
    Article Snippet: When indicated, the following inhibitors were used: LY294002 (S1105, Selleckchem), U0123 (9903, Cell Signaling), cilengitide trifluoroacetate (S7077, Selleckchem), filipin III from Streptomyces filipinensis (48049-9 Sigma-Aldrich), dynasore (304448-55-3, EMD Millipore), desatinib (BMS-354825, S1021, Selleckchem), 2-Fluoro-N-[2-(2-methyl-1Hindol-3-yl)ethyl]-benzamide ([CK-666], SML0006, Sigma-Aldrich), imipramine hydrochlor ide (I0899, Sigma-Aldrich), SB203580, 5-(N-ethyl-N-isopropyl) amiloride (1154-25-2, Sigma-Aldrich), ML141 (7120335-5, EMD Millipore), EHop-016 (S7319, Selleckchem) and NSC 23766 trihydrochloride (S8031, Selleckchem).

    Article Title: Transendothelial migration of the Lyme disease spirochete involves spirochete internalization as an intermediate step through a transcellular pathway that involves Cdc42 and Rac1
    Article Snippet: hTERT-immortalized dermal microvascular endothelial cell, neonatal (CRL4060, ATCC), was used.

    Article Title: Curcumin alleviates lipopolysaccharide-induced alveolar epithelial Glycocalyx damage by modulating the Rac1/NF-κB/HPSE pathway.
    Article Snippet: The glycocalyx, a cell surface component implicated in various diseases, has recently been recognized for its role in acute lung injury (ALI).. Also known as the alveolar epithelial polysaccharide coat, it is vital for maintaining lung barrier integrity, fluid homeostasis, and defense against pathogens.. This study investigated the protective effects and mechanisms of curcumin, a natural polyphenol, against lipopolysaccharide (LPS) -induced alveolar epithelial glycocalyx damage.

    EdU Assay:

    Article Title: Fzd2 orchestrates canonical and non-canonical Wnt signaling to regulate lung development and fibrosis
    Article Snippet: Dead cells were excluded by LIVE/DEAD Fixable Violet Dead Cell Stain Kit ( L34963 , Thermo Scientific).

    Article Title: Transendothelial migration of the Lyme disease spirochete involves spirochete internalization as an intermediate step through a transcellular pathway that involves Cdc42 and Rac1.
    Article Snippet: When indicated, the following inhibitors were used: LY294002 (S1105, Selleckchem), U0123 (9903, Cell Signaling), cilengitide trifluoroacetate (S7077, Selleckchem), filipin III from Streptomyces filipinensis (48049-9 Sigma-Aldrich), dynasore (304448-55-3, EMD Millipore), desatinib (BMS-354825, S1021, Selleckchem), 2-Fluoro-N-[2-(2-methyl-1Hindol-3-yl)ethyl]-benzamide ([CK-666], SML0006, Sigma-Aldrich), imipramine hydrochlor ide (I0899, Sigma-Aldrich), SB203580, 5-(N-ethyl-N-isopropyl) amiloride (1154-25-2, Sigma-Aldrich), ML141 (7120335-5, EMD Millipore), EHop-016 (S7319, Selleckchem) and NSC 23766 trihydrochloride (S8031, Selleckchem).

    Article Title: Transendothelial migration of the Lyme disease spirochete involves spirochete internalization as an intermediate step through a transcellular pathway that involves Cdc42 and Rac1
    Article Snippet: hTERT-immortalized dermal microvascular endothelial cell, neonatal (CRL4060, ATCC), was used.

    Article Title: Curcumin alleviates lipopolysaccharide-induced alveolar epithelial Glycocalyx damage by modulating the Rac1/NF-κB/HPSE pathway.
    Article Snippet: The glycocalyx, a cell surface component implicated in various diseases, has recently been recognized for its role in acute lung injury (ALI).. Also known as the alveolar epithelial polysaccharide coat, it is vital for maintaining lung barrier integrity, fluid homeostasis, and defense against pathogens.. This study investigated the protective effects and mechanisms of curcumin, a natural polyphenol, against lipopolysaccharide (LPS) -induced alveolar epithelial glycocalyx damage.

    Cloning:

    Article Title: Fzd2 orchestrates canonical and non-canonical Wnt signaling to regulate lung development and fibrosis
    Article Snippet: Dead cells were excluded by LIVE/DEAD Fixable Violet Dead Cell Stain Kit ( L34963 , Thermo Scientific).

    Article Title: Transendothelial migration of the Lyme disease spirochete involves spirochete internalization as an intermediate step through a transcellular pathway that involves Cdc42 and Rac1.
    Article Snippet: When indicated, the following inhibitors were used: LY294002 (S1105, Selleckchem), U0123 (9903, Cell Signaling), cilengitide trifluoroacetate (S7077, Selleckchem), filipin III from Streptomyces filipinensis (48049-9 Sigma-Aldrich), dynasore (304448-55-3, EMD Millipore), desatinib (BMS-354825, S1021, Selleckchem), 2-Fluoro-N-[2-(2-methyl-1Hindol-3-yl)ethyl]-benzamide ([CK-666], SML0006, Sigma-Aldrich), imipramine hydrochlor ide (I0899, Sigma-Aldrich), SB203580, 5-(N-ethyl-N-isopropyl) amiloride (1154-25-2, Sigma-Aldrich), ML141 (7120335-5, EMD Millipore), EHop-016 (S7319, Selleckchem) and NSC 23766 trihydrochloride (S8031, Selleckchem).

    Article Title: Transendothelial migration of the Lyme disease spirochete involves spirochete internalization as an intermediate step through a transcellular pathway that involves Cdc42 and Rac1
    Article Snippet: hTERT-immortalized dermal microvascular endothelial cell, neonatal (CRL4060, ATCC), was used.

    Article Title: Curcumin alleviates lipopolysaccharide-induced alveolar epithelial Glycocalyx damage by modulating the Rac1/NF-κB/HPSE pathway.
    Article Snippet: The glycocalyx, a cell surface component implicated in various diseases, has recently been recognized for its role in acute lung injury (ALI).. Also known as the alveolar epithelial polysaccharide coat, it is vital for maintaining lung barrier integrity, fluid homeostasis, and defense against pathogens.. This study investigated the protective effects and mechanisms of curcumin, a natural polyphenol, against lipopolysaccharide (LPS) -induced alveolar epithelial glycocalyx damage.

    Transwell Assay:

    Article Title: Fzd2 orchestrates canonical and non-canonical Wnt signaling to regulate lung development and fibrosis
    Article Snippet: Dead cells were excluded by LIVE/DEAD Fixable Violet Dead Cell Stain Kit ( L34963 , Thermo Scientific).

    Article Title: Transendothelial migration of the Lyme disease spirochete involves spirochete internalization as an intermediate step through a transcellular pathway that involves Cdc42 and Rac1.
    Article Snippet: When indicated, the following inhibitors were used: LY294002 (S1105, Selleckchem), U0123 (9903, Cell Signaling), cilengitide trifluoroacetate (S7077, Selleckchem), filipin III from Streptomyces filipinensis (48049-9 Sigma-Aldrich), dynasore (304448-55-3, EMD Millipore), desatinib (BMS-354825, S1021, Selleckchem), 2-Fluoro-N-[2-(2-methyl-1Hindol-3-yl)ethyl]-benzamide ([CK-666], SML0006, Sigma-Aldrich), imipramine hydrochlor ide (I0899, Sigma-Aldrich), SB203580, 5-(N-ethyl-N-isopropyl) amiloride (1154-25-2, Sigma-Aldrich), ML141 (7120335-5, EMD Millipore), EHop-016 (S7319, Selleckchem) and NSC 23766 trihydrochloride (S8031, Selleckchem).

    Article Title: Transendothelial migration of the Lyme disease spirochete involves spirochete internalization as an intermediate step through a transcellular pathway that involves Cdc42 and Rac1
    Article Snippet: hTERT-immortalized dermal microvascular endothelial cell, neonatal (CRL4060, ATCC), was used.

    Article Title: Curcumin alleviates lipopolysaccharide-induced alveolar epithelial Glycocalyx damage by modulating the Rac1/NF-κB/HPSE pathway.
    Article Snippet: The glycocalyx, a cell surface component implicated in various diseases, has recently been recognized for its role in acute lung injury (ALI).. Also known as the alveolar epithelial polysaccharide coat, it is vital for maintaining lung barrier integrity, fluid homeostasis, and defense against pathogens.. This study investigated the protective effects and mechanisms of curcumin, a natural polyphenol, against lipopolysaccharide (LPS) -induced alveolar epithelial glycocalyx damage.



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    10X Genomics cell transcriptomic sequencing dataset
    <t>Transcriptomic</t> and TME characteristics associated with ECMSig in TCGA-GBM cohort (A) Volcano plot showing DEGs between ECMSig-high and ECMSig-low groups. Red dots: upregulated in high-risk; blue dots: upregulated in low-risk. Benjamini-Hochberg adjusted. (B) Gene set enrichment analysis (GSEA) plots showing enrichment of hallmark pathways. Pathways enriched in ECMSig-high and ECMSig-low groups are shown with their running enrichment scores (ESs) and ranked gene lists. Benjamini-Hochberg adjusted. (C) Heatmap showing the activity scores of selected oncogenic and tumor-related signaling pathways (rows) across TCGA-GBM samples (columns), annotated by ECMSig group and ECMSig score. Red indicates high activity, blue indicates low activity. ∗ p < 0.05. Wilcoxon signed-rank test. (D) Heatmap depicting the estimated infiltration levels of various immune and stromal cell types (rows) in TCGA-GBM samples (columns), stratified by ECMSig group and score. Red indicates high infiltration, blue indicates low infiltration. Cells significantly highly infiltrated in ECMSig-high are labeled in red, and those high in ECMSig-low group are in blue. ∗q < 0.05, ∗∗q < 0.01, ∗∗∗q < 0.001. Wilcoxon signed-rank test. Benjamini-Hochberg adjusted. (E and F) Scatterplots showing the spearman correlation between ECMSig score and (E) Macrophage_XCELL infiltration score and (F) immune_score_XCELL. The blue line represents the linear regression fit with 95% confidence interval bands. Spearman correlation test.
    Cell Transcriptomic Sequencing Dataset, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    cell transcriptomic sequencing dataset - by Bioz Stars, 2026-11
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    Transcriptomic and TME characteristics associated with ECMSig in TCGA-GBM cohort (A) Volcano plot showing DEGs between ECMSig-high and ECMSig-low groups. Red dots: upregulated in high-risk; blue dots: upregulated in low-risk. Benjamini-Hochberg adjusted. (B) Gene set enrichment analysis (GSEA) plots showing enrichment of hallmark pathways. Pathways enriched in ECMSig-high and ECMSig-low groups are shown with their running enrichment scores (ESs) and ranked gene lists. Benjamini-Hochberg adjusted. (C) Heatmap showing the activity scores of selected oncogenic and tumor-related signaling pathways (rows) across TCGA-GBM samples (columns), annotated by ECMSig group and ECMSig score. Red indicates high activity, blue indicates low activity. ∗ p < 0.05. Wilcoxon signed-rank test. (D) Heatmap depicting the estimated infiltration levels of various immune and stromal cell types (rows) in TCGA-GBM samples (columns), stratified by ECMSig group and score. Red indicates high infiltration, blue indicates low infiltration. Cells significantly highly infiltrated in ECMSig-high are labeled in red, and those high in ECMSig-low group are in blue. ∗q < 0.05, ∗∗q < 0.01, ∗∗∗q < 0.001. Wilcoxon signed-rank test. Benjamini-Hochberg adjusted. (E and F) Scatterplots showing the spearman correlation between ECMSig score and (E) Macrophage_XCELL infiltration score and (F) immune_score_XCELL. The blue line represents the linear regression fit with 95% confidence interval bands. Spearman correlation test.

    Journal: iScience

    Article Title: Multi-omics profiling-derived signature links cellular ecosystem to glioblastoma prognosis

    doi: 10.1016/j.isci.2026.115982

    Figure Lengend Snippet: Transcriptomic and TME characteristics associated with ECMSig in TCGA-GBM cohort (A) Volcano plot showing DEGs between ECMSig-high and ECMSig-low groups. Red dots: upregulated in high-risk; blue dots: upregulated in low-risk. Benjamini-Hochberg adjusted. (B) Gene set enrichment analysis (GSEA) plots showing enrichment of hallmark pathways. Pathways enriched in ECMSig-high and ECMSig-low groups are shown with their running enrichment scores (ESs) and ranked gene lists. Benjamini-Hochberg adjusted. (C) Heatmap showing the activity scores of selected oncogenic and tumor-related signaling pathways (rows) across TCGA-GBM samples (columns), annotated by ECMSig group and ECMSig score. Red indicates high activity, blue indicates low activity. ∗ p < 0.05. Wilcoxon signed-rank test. (D) Heatmap depicting the estimated infiltration levels of various immune and stromal cell types (rows) in TCGA-GBM samples (columns), stratified by ECMSig group and score. Red indicates high infiltration, blue indicates low infiltration. Cells significantly highly infiltrated in ECMSig-high are labeled in red, and those high in ECMSig-low group are in blue. ∗q < 0.05, ∗∗q < 0.01, ∗∗∗q < 0.001. Wilcoxon signed-rank test. Benjamini-Hochberg adjusted. (E and F) Scatterplots showing the spearman correlation between ECMSig score and (E) Macrophage_XCELL infiltration score and (F) immune_score_XCELL. The blue line represents the linear regression fit with 95% confidence interval bands. Spearman correlation test.

    Article Snippet: The single-cell transcriptomic sequencing dataset utilizing technology from the 10X Genomics platform was available under the accession number GEO: GSE182109 at the Gene Expression Omnibus (GEO) repository.

    Techniques: Activity Assay, Protein-Protein interactions, Labeling

    Single-cell RNA sequencing analysis revealing ECMSig expression across cell types and identification of prognostically relevant cell states in GBM (A) UMAP visualization of major cell types identified in GBM scRNA-seq data. (B) Dot plot showing the scaled average expression (color intensity) and percentage of cells expressing (dot size) canonical marker genes for each major cell type. (C) Dot plot showing the scaled average expression and percentage of cells expressing the seven ECMSig genes across major cell types. (D) UMAP plots showing the expression levels of individual ECMSig genes and overall ECMSig score across all cells. (E–G) UMAP plots illustrating Scissor-identified prognostically unfavorable (Scissor_Pos, red dashed circle) and favorable (Scissor_Neg, blue dashed circle; Scissor_Others, gray) cell subpopulations within (E) tumor cells, (F) myeloid cells, and (G) endothelial cells. (H–K) Violin plots comparing ECMSig scores among tumor cells grouped by Scissor status (H) and tumor type (I), and myeloid cells (J) or endothelial cells (K) grouped by Scissor status. ∗∗∗∗ p < 0.0001. Wilcoxon signed-rank test. (L) Dot plot showing differentially expressed marker genes between myeloid Scissor_Pos and other myeloid cells. Dot size indicates the fraction of cells in the group expressing the gene; color indicates average expression level.

    Journal: iScience

    Article Title: Multi-omics profiling-derived signature links cellular ecosystem to glioblastoma prognosis

    doi: 10.1016/j.isci.2026.115982

    Figure Lengend Snippet: Single-cell RNA sequencing analysis revealing ECMSig expression across cell types and identification of prognostically relevant cell states in GBM (A) UMAP visualization of major cell types identified in GBM scRNA-seq data. (B) Dot plot showing the scaled average expression (color intensity) and percentage of cells expressing (dot size) canonical marker genes for each major cell type. (C) Dot plot showing the scaled average expression and percentage of cells expressing the seven ECMSig genes across major cell types. (D) UMAP plots showing the expression levels of individual ECMSig genes and overall ECMSig score across all cells. (E–G) UMAP plots illustrating Scissor-identified prognostically unfavorable (Scissor_Pos, red dashed circle) and favorable (Scissor_Neg, blue dashed circle; Scissor_Others, gray) cell subpopulations within (E) tumor cells, (F) myeloid cells, and (G) endothelial cells. (H–K) Violin plots comparing ECMSig scores among tumor cells grouped by Scissor status (H) and tumor type (I), and myeloid cells (J) or endothelial cells (K) grouped by Scissor status. ∗∗∗∗ p < 0.0001. Wilcoxon signed-rank test. (L) Dot plot showing differentially expressed marker genes between myeloid Scissor_Pos and other myeloid cells. Dot size indicates the fraction of cells in the group expressing the gene; color indicates average expression level.

    Article Snippet: The single-cell transcriptomic sequencing dataset utilizing technology from the 10X Genomics platform was available under the accession number GEO: GSE182109 at the Gene Expression Omnibus (GEO) repository.

    Techniques: Single Cell, RNA Sequencing, Expressing, Marker

    Spatial transcriptomic analysis revealing co-localization of ECMSig, hypoxia, Scissor-Positive cells, and pericytes in GBM (A) Spatial feature plots for four GBM samples. Each row represents a sample. Columns show spatial heatmaps of: ECMSig score, hypoxia signature score, tumor Scissor_Pos signature score, myeloid Scissor_Pos signature score, endothelial Scissor Pos signature score, and pericyte marker signature score. Color scale indicates scaled expression or score (low to high). Each dot represents a spatial barcoded spot.

    Journal: iScience

    Article Title: Multi-omics profiling-derived signature links cellular ecosystem to glioblastoma prognosis

    doi: 10.1016/j.isci.2026.115982

    Figure Lengend Snippet: Spatial transcriptomic analysis revealing co-localization of ECMSig, hypoxia, Scissor-Positive cells, and pericytes in GBM (A) Spatial feature plots for four GBM samples. Each row represents a sample. Columns show spatial heatmaps of: ECMSig score, hypoxia signature score, tumor Scissor_Pos signature score, myeloid Scissor_Pos signature score, endothelial Scissor Pos signature score, and pericyte marker signature score. Color scale indicates scaled expression or score (low to high). Each dot represents a spatial barcoded spot.

    Article Snippet: The single-cell transcriptomic sequencing dataset utilizing technology from the 10X Genomics platform was available under the accession number GEO: GSE182109 at the Gene Expression Omnibus (GEO) repository.

    Techniques: Marker, Expressing