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Celera umd+celera#2
Umd+Celera#2, supplied by Celera, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/celera+assembler/umd+celera+assemblies/pm15579242-348-3-7
Average 90 stars, based on 1 article reviews
umd+celera#2 - by Bioz Stars, 2026-11
90/100 stars

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Article Title: A preprocessor for shotgun assembly of large genomes.
Article Snippet: UMD+Celera#2 yielded an extra 1.0 Mbp compared to UMD+Celera#1.

Article Title: A tool for analyzing mate pairs in assemblies (TAMPA).
Article Snippet: The current generation of genome assembly programs uses distance and orientation relationships of paired end reads of clones (mate pairs) to order and orient contigs.. Mate pair data can also be used to evaluate and compare assemblies after the fact.. Earlier work employed a simple heuristic to detect assembly problems by scanning across an assembly to locate peak concentrations of unsatisfied mate pairs.

Article Title: Tissue-protective effects of NKG2A in immune-mediated clearance of virus infection.
Article Snippet: This probe sequence corresponds to the range of 131393104 to 131393665 of Mm_Celera alternate assembly on mouse chromosome 6, accession number AC_000028.1. (DOCX)

Article Title: Direct promoter induction of p19Arf by Pit-1 explains the dependence receptor RET/Pit-1/p53-induced apoptosis in the pituitary somatotroph cells.
Article Snippet: The sequences were found in the following: Homo sapiens NCBI Ref Seq NG_007485.1 (reviewed 29 November 2010); Mus musculus NCBI NC_000070.5, GeneID 12578 (updated 26 Nov 2010); Rattus norvegicus Alternate assembly (Rn_Celera) AC_000073.1.

Article Title: A preprocessor for shotgun assembly of large genomes.
Article Snippet: UMD+Celera#2 used some scaffold information created in UMD+Celera#1, together with mated pair information, as described below.

Sequencing:

Article Title: Validation of the performance of a comprehensive genotyping assay panel of single nucleotide polymorphisms in drug metabolism enzyme genes.
Article Snippet: Robert A. Welch, Katherine Lazaruk, Kashif A. Haque, Fiona Hyland, Nianqing Xiao, Loni Wronka, Laura Burdett, Stephen J. Chanock, Daniel Ingber, Francisco M. De La Vega, and Meredith Yeager Core Genotyping Facility, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health (NIH), Department of Health and Human Services (DHHS), Bethesda, Maryland; Advanced Technology Program, Science Applications International Corporation (SAIC)-Frederick, National Cancer Institute, Frederick, Maryland; Applied Biosystems, Foster City, California; Section on Genomic Variation, Pediatric Oncology Branch, Center for Cancer Research, National Cancer Institute, NIH, DHHS, Bethesda, Maryland

Article Title: A Systematic Analysis Revealed the Potential Gene Regulatory Processes of ATRA-Triggered Neuroblastoma Differentiation and Identified a Novel RA Response Sequence in the NTRK2 Gene
Article Snippet: .. Chromosome location Rattus norvegicus strain BN; Sprague-Dawley, alternate assembly Rn_Celera, chromosome 17, 5981705 to 5982112 Relative location of NTRK2 homologous gene 893 bp at 5' side: BDNF/NT-3 growth factors receptor isoform 2 precursor Sequence Species Monkey Chromosome location Macaca mulatta isolate 17573, Mmul_8.0.1, chromosome 15, 101009820 to 101010229 Relative location of NTRK2 homologous gene 1018 bp at 3' side: BDNF/NT-3 growth factors receptor precursor (Continued) 27 Sequence ..



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