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maryland super-read celera assembler v.4.1.0 (masurca)  (Celera)

 
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    Celera maryland super-read celera assembler v.4.1.0 (masurca)
    Maryland Super Read Celera Assembler V.4.1.0 (Masurca), supplied by Celera, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/celera+assembler/maryland+super+read+celera+assembler/pmc11797018-81-22-24
    Average 90 stars, based on 1 article reviews
    maryland super-read celera assembler v.4.1.0 (masurca) - by Bioz Stars, 2026-09
    90/100 stars

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    Article Title: Advancements in long-read genome sequencing technologies and algorithms.
    Article Snippet: The Super-Read Celera Assembler (MaSuRCA [64]) represents the second strategy, emphasizing the independent de novo assembly of long reads before enhancing contig accuracy through short read mapping.

    Article Title: Genomic Survey and Microsatellite Marker Investigation of Patagonian Moray Cod ( Muraenolepis orangiensis ).
    Article Snippet: The draft de novo genome assembly was carried out using Maryland Super-Read Celera Assembler (MaSuRCA version 3.3.4) [18].

    Article Title: Comparative genomics of tarakihi ( Nemadactylus macropterus ) and five New Zealand fish species: assembly contiguity affects the identification of genic features but not transposable elements
    Article Snippet: Genome assemblies were performed with the Maryland Super-Read Celera Assembler, MaSuRCA v3.4.1 ( , ).

    Article Title: Genome assembly and isoform analysis of a highly heterozygous New Zealand fisheries species, the tarakihi ( Nemadactylus macropterus )
    Article Snippet: De novo genome assembly of short- and long-reads was performed with the Maryland Super-Read Celera Assembler pipeline, MaSuRCA ( Zimin et al ., 2013 ; Zimin, Puiu, et al ., 2017 ).

    Article Title: Semi-automated assembly of high-quality diploid human reference genomes
    Article Snippet: Among these 23, 12 assembly algorithms were used: Canu and HiCanu , CrossStitch, DipAsm , FALCON Unzip , Flye , hifiasm , Maryland Super-Read Celera Assembler (MaSuRCA) , NECAT , Peregrine , Shasta and wtdbg (Table ).

    Article Title: Semi-automated assembly of high-quality diploid human reference genomes.
    Article Snippet: Among these 23, 12 assembly algorithms were used: Canu and HiCanu17, CrossStitch, DipAsm29, FALCON Unzip21, Flye30, hifiasm31, Maryland Super-Read Celera Assembler (MaSuRCA)32, NECAT33, Peregrine34, Shasta28 and wtdbg35 (Table 1).

    Article Title: A near-complete telomere-to-telomere genome assembly for Batrachochytrium dendrobatidis GPL JEL423 reveals a larger CBM18 gene family and a smaller M36 metalloprotease gene family than previously recognized
    Article Snippet: The hybrid de novo genome assembly that demonstrated the best mix of contiguity, completeness, and number of telomeres was generated by the Maryland Super-Read Celera Assembler v.4.1.0 (MaSuRCA) ( Zimin et al . 2013 ) with parameters “GRAPH_KMER_SIZE = auto, USE_LINKING_MATES = 0, LIMIT_JUMP_COVERAGE = 300, CA_PARAMETERS = cgwErrorRate = 0.15, KMER_COUNT_THRESHOLD = 1, NUM_THREADS = 16, JF_SIZE = 480000000, SOAP_ASSEMBLY = 0”.

    Article Title: Whole-Genome Survey and Microsatellite Marker Detection of Antarctic Crocodile Icefish, Chionobathyscus dewitti
    Article Snippet: The de novo draft genome assembly was conducted using Maryland Super-Read Celera Assembler (MaSuRCA) version 3.3.4 [ ], and the contig-level assembly statistics were calculated using the assemblathon_stats.pl script (available online: https://github.com/ucdavis-bioinformatics/assemblathon2-analysis (accessed on 5 March 2022).



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