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microarray raw data (cel files)  (Biotechnology Information)

 
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    Biotechnology Information microarray raw data (cel files)
    Microarray Raw Data (Cel Files), supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cel+files+(raw+data)/raw+microarray+data/pmc06672014-200-0-16
    Average 90 stars, based on 1 article reviews
    microarray raw data (cel files) - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Microarray:

    Article Title: Effect of immunosuppression in miRNAs from extracellular vesicles of colorectal cancer and their influence on the pre-metastatic niche
    Article Snippet: .. Microarray raw data (cel files) and processed data have been deposited in the National Center for Biotechnology Information (NCBI)’s Gene Expression Omnibus and are accessible through GEO Series accession number GSE123710. .. All in vitro data were analysed using Student’s t-test with GraphPadPrism 6 statistical software (GraphPad Software Inc).

    Article Title: Distinct transcriptional and metabolic profiles associated with empathy in Buddhist priests: a pilot study
    Article Snippet: .. Microarray raw data have been deposited in the National Center for Biotechnology Information Gene Expression Omnibus (accession number GSE77676). ..

    Article Title: Identification of Core Genes Shared by Endometrial Cancer and Ovarian Cancer Using an Integrated Approach.
    Article Snippet: .. 1) In this investigation, the raw microarray data were obtained from the National Center for Biotechnology Information (NCBI) database. ..

    Article Title: Copper transporter COPT5 participates in the crosstalk between vacuolar copper and iron pools mobilisation
    Article Snippet: .. The microarray raw data were deposited in the National Center for Biotechnology Information Gene Expression Omnibus and are accessible through accession number GSE91044. ..

    Article Title: Up-regulation of EP 2 and EP 3 receptors in human tolerogenic dendritic cells boosts the immunosuppressive activity of PGE 2 .
    Article Snippet: .. Microarray raw data (.cel files) and processed data have been uploaded in the Gene Expression Omnibus of the National Center for Biotechnology Information (Bethesda, MD, USA) and are accessible through GEO series accession number GSE56017. .. Total RNA was isolated with RNeasy Mini Kit columns (Qiagen, Hilden, Germany).

    Article Title: Distinct transcriptional and metabolic profiles associated with empathy in Buddhist priests: a pilot study
    Article Snippet: .. Microarray raw data were deposited in the National Center for Biotechnology Information Gene Expression Omnibus ( accession number GSE77676). ..

    Article Title: Cross-talk between the gut microbiota and monocyte-like macrophages mediates an inflammatory response to promote colitis-associated tumourigenesis
    Article Snippet: .. For integration of multiple microarray data sets, raw microarray data (.CEL files) were downloaded from the National Center for Biotechnology Information Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo), and pre-processed via the affy package. .. To minimize variations caused by different platforms, only samples probed with Affymetrix HT HG-U133+ PM (HT_HG-U133_Plus_PM) Array were doi: 10.1136/gutjnl-2020-320777–1506.

    Gene Expression:

    Article Title: Effect of immunosuppression in miRNAs from extracellular vesicles of colorectal cancer and their influence on the pre-metastatic niche
    Article Snippet: .. Microarray raw data (cel files) and processed data have been deposited in the National Center for Biotechnology Information (NCBI)’s Gene Expression Omnibus and are accessible through GEO Series accession number GSE123710. .. All in vitro data were analysed using Student’s t-test with GraphPadPrism 6 statistical software (GraphPad Software Inc).

    Article Title: Distinct transcriptional and metabolic profiles associated with empathy in Buddhist priests: a pilot study
    Article Snippet: .. Microarray raw data have been deposited in the National Center for Biotechnology Information Gene Expression Omnibus (accession number GSE77676). ..

    Article Title: Copper transporter COPT5 participates in the crosstalk between vacuolar copper and iron pools mobilisation
    Article Snippet: .. The microarray raw data were deposited in the National Center for Biotechnology Information Gene Expression Omnibus and are accessible through accession number GSE91044. ..

    Article Title: Up-regulation of EP 2 and EP 3 receptors in human tolerogenic dendritic cells boosts the immunosuppressive activity of PGE 2 .
    Article Snippet: .. Microarray raw data (.cel files) and processed data have been uploaded in the Gene Expression Omnibus of the National Center for Biotechnology Information (Bethesda, MD, USA) and are accessible through GEO series accession number GSE56017. .. Total RNA was isolated with RNeasy Mini Kit columns (Qiagen, Hilden, Germany).

    Article Title: Distinct transcriptional and metabolic profiles associated with empathy in Buddhist priests: a pilot study
    Article Snippet: .. Microarray raw data were deposited in the National Center for Biotechnology Information Gene Expression Omnibus ( accession number GSE77676). ..

    Article Title: Cross-talk between the gut microbiota and monocyte-like macrophages mediates an inflammatory response to promote colitis-associated tumourigenesis
    Article Snippet: .. For integration of multiple microarray data sets, raw microarray data (.CEL files) were downloaded from the National Center for Biotechnology Information Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo), and pre-processed via the affy package. .. To minimize variations caused by different platforms, only samples probed with Affymetrix HT HG-U133+ PM (HT_HG-U133_Plus_PM) Array were doi: 10.1136/gutjnl-2020-320777–1506.

    other:

    Article Title: Effect of immunosuppression in miRNAs from extracellular vesicles of colorectal cancer and their influence on the pre-metastatic niche
    Article Snippet: • Submission of methodologic details to EV-TRACK (evtrack.org) with EV-TRACK number provided (strongly encouraged) • Submission of data (proteomic, sequencing, other) to relevant public, curated databases or open- access repositories Microarray raw data [.cel files] and processed data have been deposited in the National Center for Biotechnology Information [NCBI] ’s Gene Expression Omnibus and are accessible through GEO Series accession number GSE123710.



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    Image Search Results


    ( A ) PcG gene expression in TCGA glioblastoma multiforme (GBM) subtypes. Using the TCGA data for GBM, pair-wise comparisons were conducted between all 4 of the molecular subtypes (Mesenchymal, Classical, Neural and Proneural, color coded). ** P<0.01. ( B ) Continuum of abnormal expression in PcG genes in different histological grades of astrocytomas. The Y-axis measures the background adjusted Robust Multi-array Average (RMA) which indicates the normalized expression level. Box-and-whisker plots show the distribution of mRNA expression in normal brain and different grades of astrocytomas (color coded). For detailed statistical analyses, please see & .

    Journal: PLoS ONE

    Article Title: Altered Expression of Polycomb Group Genes in Glioblastoma Multiforme

    doi: 10.1371/journal.pone.0080970

    Figure Lengend Snippet: ( A ) PcG gene expression in TCGA glioblastoma multiforme (GBM) subtypes. Using the TCGA data for GBM, pair-wise comparisons were conducted between all 4 of the molecular subtypes (Mesenchymal, Classical, Neural and Proneural, color coded). ** P<0.01. ( B ) Continuum of abnormal expression in PcG genes in different histological grades of astrocytomas. The Y-axis measures the background adjusted Robust Multi-array Average (RMA) which indicates the normalized expression level. Box-and-whisker plots show the distribution of mRNA expression in normal brain and different grades of astrocytomas (color coded). For detailed statistical analyses, please see & .

    Article Snippet: Robust multichip average (RMA) normalization was applied to raw expression TCGA data (.CEL files for Affymetrix arrays) .

    Techniques: Expressing, Whisker Assay

    Gene expression dataset . A) The gene expression dataset analyzed comprises cell samples from different levels of myeloid differentiation process (stem/progenitor cells, precursors and terminally differentiated cells). The graph describes relationships between the cellular contexts analyzed within myeloid differentiation tree. For each cell type, the number of samples examined with independent microarray experiments is indicated in brackets. B) Dendrogram obtained by unsupervised hierarchical clustering on gene expression data matrix. Pearson correlation and average were used as similarity measure and linking method, respectively.

    Journal: BMC Genomics

    Article Title: Genomic expression during human myelopoiesis

    doi: 10.1186/1471-2164-8-264

    Figure Lengend Snippet: Gene expression dataset . A) The gene expression dataset analyzed comprises cell samples from different levels of myeloid differentiation process (stem/progenitor cells, precursors and terminally differentiated cells). The graph describes relationships between the cellular contexts analyzed within myeloid differentiation tree. For each cell type, the number of samples examined with independent microarray experiments is indicated in brackets. B) Dendrogram obtained by unsupervised hierarchical clustering on gene expression data matrix. Pearson correlation and average were used as similarity measure and linking method, respectively.

    Article Snippet: In particular, raw microarray data (Affymetrix .CEL files) were obtained for a total of 24 samples from 8 different cell types of all myelopoietic lineages, representing a reference dataset for a comprehensive analysis of genomic expression during cell differentiation.

    Techniques: Expressing, Microarray

    Journal: bioRxiv

    Article Title: Utility of a high-resolution mouse single nucleotide polymorphism microarray assessed for rodent comparative genomics

    doi: 10.1101/2020.09.29.318071

    Figure Lengend Snippet:

    Article Snippet: Forty publicly available MDGA raw data (CEL) files were downloaded from the Center for Genome Dynamics at the Jackson Laboratory (2012, The Jackson Laboratory; ftp.jax.org/petrs/MDA/ ).

    Techniques:

    SNP distance-based tree of genetic relatedness of samples from the intra-genus test set (n = 27). At 9.5 MYD a pygmy mouse subspecies M. n. orangiae has SNP-based genetic distances that reflect greater genetic similarity to another pygmy mouse subspecies M. n. minutoides than the replicate MDGA data file of the same M. n. orangiae sample. MYD = Millions of years divergence, with respect to the reference Mus musculus .

    Journal: bioRxiv

    Article Title: Utility of a high-resolution mouse single nucleotide polymorphism microarray assessed for rodent comparative genomics

    doi: 10.1101/2020.09.29.318071

    Figure Lengend Snippet: SNP distance-based tree of genetic relatedness of samples from the intra-genus test set (n = 27). At 9.5 MYD a pygmy mouse subspecies M. n. orangiae has SNP-based genetic distances that reflect greater genetic similarity to another pygmy mouse subspecies M. n. minutoides than the replicate MDGA data file of the same M. n. orangiae sample. MYD = Millions of years divergence, with respect to the reference Mus musculus .

    Article Snippet: Forty publicly available MDGA raw data (CEL) files were downloaded from the Center for Genome Dynamics at the Jackson Laboratory (2012, The Jackson Laboratory; ftp.jax.org/petrs/MDA/ ).

    Techniques: