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Structured Review

Biotechnology Information cap3 sequence assembly program
Cap3 Sequence Assembly Program, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cap3+sequence+assembly+program/cap3+software/pmc07376220-69-10-22
Average 90 stars, based on 1 article reviews
cap3 sequence assembly program - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Sequencing:

Article Title: Phylogeny-directed structural analysis of the Arabidopsis PsbS protein.
Article Snippet: Plant psbS proteins are essential for regulated thermal dissipation of excess light referred to as non-photochemical quenching of chlorophyll fluorescence yield (NPQ).. Amino acid sequences derived from 65 psbS genes from 44 species were aligned to reveal extensive conservation consistent with of motifs that underlie intrinsic aspects of the NPQ mechanism.. Site-directed mutagenesis was employed to block presumptive zeaxanthin or chlorophyll-binding sites in Arabidopsis psbS by disrupting ion-bonding between two pairs of non-adjacent glutamate and arginine residues.

Article Title: Insights from the cDNA and EST analysis of Antrodia cinnamomea
Article Snippet: .. The adapter sequences were trimmed by Vecscreen tool (www.ncbi.nlm.nih.gov/tools/vecscreen) of National Center for Biotechnology Information (NCBI) and the inaccurate bases, poly-A tails, low-quality sequences (<100 bp) and other fragments [ ] by CAP3 software removed to finally obtain more accurate sequencing. ..

Article Title: Biofabrication of zinc oxide nanoparticles from Melia azedarach and its potential in controlling soybean seed-borne phytopathogenic fungi
Article Snippet: .. A contiguous sequence out of two sequences was generated using CAP3 sequence assembly program and submitted to the GenBank, National Center for Biotechnology Information (NCBI) ( ). ..

Generated:

Article Title: Phylogeny-directed structural analysis of the Arabidopsis PsbS protein.
Article Snippet: Plant psbS proteins are essential for regulated thermal dissipation of excess light referred to as non-photochemical quenching of chlorophyll fluorescence yield (NPQ).. Amino acid sequences derived from 65 psbS genes from 44 species were aligned to reveal extensive conservation consistent with of motifs that underlie intrinsic aspects of the NPQ mechanism.. Site-directed mutagenesis was employed to block presumptive zeaxanthin or chlorophyll-binding sites in Arabidopsis psbS by disrupting ion-bonding between two pairs of non-adjacent glutamate and arginine residues.

Article Title: Biofabrication of zinc oxide nanoparticles from Melia azedarach and its potential in controlling soybean seed-borne phytopathogenic fungi
Article Snippet: .. A contiguous sequence out of two sequences was generated using CAP3 sequence assembly program and submitted to the GenBank, National Center for Biotechnology Information (NCBI) ( ). ..

Derivative Assay:

Article Title: Phylogeny-directed structural analysis of the Arabidopsis PsbS protein.
Article Snippet: Plant psbS proteins are essential for regulated thermal dissipation of excess light referred to as non-photochemical quenching of chlorophyll fluorescence yield (NPQ).. Amino acid sequences derived from 65 psbS genes from 44 species were aligned to reveal extensive conservation consistent with of motifs that underlie intrinsic aspects of the NPQ mechanism.. Site-directed mutagenesis was employed to block presumptive zeaxanthin or chlorophyll-binding sites in Arabidopsis psbS by disrupting ion-bonding between two pairs of non-adjacent glutamate and arginine residues.

Genomic Sequencing:

Article Title: Phylogeny-directed structural analysis of the Arabidopsis PsbS protein.
Article Snippet: Plant psbS proteins are essential for regulated thermal dissipation of excess light referred to as non-photochemical quenching of chlorophyll fluorescence yield (NPQ).. Amino acid sequences derived from 65 psbS genes from 44 species were aligned to reveal extensive conservation consistent with of motifs that underlie intrinsic aspects of the NPQ mechanism.. Site-directed mutagenesis was employed to block presumptive zeaxanthin or chlorophyll-binding sites in Arabidopsis psbS by disrupting ion-bonding between two pairs of non-adjacent glutamate and arginine residues.

other:

Article Title: Hc-daf-2 encodes an insulin-like receptor kinase in the barber's pole worm, Haemonchus contortus , and restores partial dauer regulation
Article Snippet: Bioinformatic and phylogenetic analyses Nucleotide sequences were assembled using CAP3 ( http://bio.ifom-firc.it/ASSEMBLY/assemble.html ) and compared with those in non-redundant databases using the BLAST v.2.0 suite of programs from the National Center for Biotechnology Information (NCBI, USA) ( http://www.ncbi.nlm.nih.gov/BLAST ), the Sanger Centre ( www.sanger.ac.uk ) and the Parasite Genome database ( www.ebi.ac.uk ) to confirm the identity of genes isolated.

Article Title: Elucidating ANTs in worms using genomic and bioinformatic tools--biotechnological prospects?
Article Snippet: Contents lists available at ScienceDirect Biotechnology Advances j ourna l homepage: www.e lsev ie r.com/ locate /b iotechadv Research review paper Elucidating ANTs in worms using genomic and bioinformatic tools — Biotechnological prospects?☆ Min Hu a,1, Weiwei Zhong b,c, Bronwyn E. Campbell a, Paul W. Sternberg c, Mark W. Pellegrino d, Robin B. Gasser a,⁎ a Department of Veterinary Science, The University of Melbourne, 250 Princes Highway, Werribee, Victoria 3030, Australia b Department of Biochemistry and Cell Biology, Rice University, Houston, TX 77005, USA c Biology Division, California Institute of Technology, Pasadena, CA 91125, USA d Institute of Zoology, University of Zurich, Zurich, Switzerland Abbreviations: ANT, adenine nucleotide translocator larva; RACE, rapid amplification of cDNA ends; qPCR, qu ☆ Note: Nucleotide sequence data reported in this pap ⁎ Corresponding author.. Tel.. : +61 3 97312000; fax: + E-mail address: robinbg@unimelb.edu.au (R.B.

Software:

Article Title: Insights from the cDNA and EST analysis of Antrodia cinnamomea
Article Snippet: .. The adapter sequences were trimmed by Vecscreen tool (www.ncbi.nlm.nih.gov/tools/vecscreen) of National Center for Biotechnology Information (NCBI) and the inaccurate bases, poly-A tails, low-quality sequences (<100 bp) and other fragments [ ] by CAP3 software removed to finally obtain more accurate sequencing. ..



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