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Vizgen Inc merfish brain receptor map datasets
Merfish Brain Receptor Map Datasets, supplied by Vizgen Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/brain+mapping/map+merfish+mouse+receptor/pm41163012-353-1-0
Average 86 stars, based on 1 article reviews
merfish brain receptor map datasets - by Bioz Stars, 2026-11
86/100 stars

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Article Title: Giotto Suite: a multiscale and technology-agnostic spatial multiomics analysis ecosystem.
Article Snippet: Vizgen dataset. .. The MERSCOPE/MERFISH FF mouse brain (data release version 1.0, May 2021) and FFPE breast cancer (May 2022) datasets were downloaded directly from the Vizgen website at https:// info.vizgen.com/mouse-brain-data and https://info.vizgen.com/ ffpe-showcase, respectively. ..

Article Title: Giotto Suite: a multiscale and technology-agnostic spatial multiomics analysis ecosystem
Article Snippet: Vizgen dataset. .. The MERSCOPE/MERFISH FF mouse brain (data release version 1.0, May 2021) and FFPE breast cancer (May 2022) datasets were downloaded directly from the Vizgen website at https://info.vizgen.com/mouse-brain-data and https://info.vizgen.com/ffpe-showcase , respectively. ..

Article Title: Identifying 3D signal overlaps in spatial transcriptomics data with ovrlpy.
Article Snippet: Imaging-based spatially resolved transcriptomics can localize transcripts within tissue sections in three dimensions.. However, cell segmentation, which assigns transcripts to cells, is usually performed in two dimensions and spatial doublets in the vertical dimension result in segmented cells containing transcripts originating from multiple cell types.. Here we present a computational tool called ovrlpy that identifies overlapping cells, tissue folds and inaccurate cell segmentation by analyzing transcript localization in three dimensions.

other:

Article Title: Cross-expression meta-analysis of mouse brain slices reveals coordinated gene expression across spatially adjacent cells.
Article Snippet: Vizgen MERFISH brain receptor map datasets We obtained Vizgen MERSCOPE’s mouse brain receptor map from https:// info. vizgen. com/ mouse- brain- data.



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Representative lowest energy docking poses of (a) cis -PST-1, (b) trans -PST-1, (c) cis -proPST-1, and (d) trans -proPST-1 within the colchicine binding pocket of <t>tubulin</t> (PDB ID: 5LYJ). Ligands are represented as orange sticks, while interacting amino acid residues are shown as yellow sticks and labelled using single-letter amino acid notation. Hydrogen-bonding and hydrophobic interactions are indicated by red and blue dashed lines, respectively, with corresponding interaction distances (Å) shown. Structures and interaction maps were generated using PyMOL v3.0.
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Representative lowest energy docking poses of (a) cis -PST-1, (b) trans -PST-1, (c) cis -proPST-1, and (d) trans -proPST-1 within the colchicine binding pocket of <t>tubulin</t> (PDB ID: 5LYJ). Ligands are represented as orange sticks, while interacting amino acid residues are shown as yellow sticks and labelled using single-letter amino acid notation. Hydrogen-bonding and hydrophobic interactions are indicated by red and blue dashed lines, respectively, with corresponding interaction distances (Å) shown. Structures and interaction maps were generated using PyMOL v3.0.
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Representative lowest energy docking poses of (a) cis -PST-1, (b) trans -PST-1, (c) cis -proPST-1, and (d) trans -proPST-1 within the colchicine binding pocket of <t>tubulin</t> (PDB ID: 5LYJ). Ligands are represented as orange sticks, while interacting amino acid residues are shown as yellow sticks and labelled using single-letter amino acid notation. Hydrogen-bonding and hydrophobic interactions are indicated by red and blue dashed lines, respectively, with corresponding interaction distances (Å) shown. Structures and interaction maps were generated using PyMOL v3.0.
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Average 86 stars, based on 1 article reviews
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86/100 stars
  Buy from Supplier

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Vizgen Inc mouse brain receptor map dataset
Representative lowest energy docking poses of (a) cis -PST-1, (b) trans -PST-1, (c) cis -proPST-1, and (d) trans -proPST-1 within the colchicine binding pocket of <t>tubulin</t> (PDB ID: 5LYJ). Ligands are represented as orange sticks, while interacting amino acid residues are shown as yellow sticks and labelled using single-letter amino acid notation. Hydrogen-bonding and hydrophobic interactions are indicated by red and blue dashed lines, respectively, with corresponding interaction distances (Å) shown. Structures and interaction maps were generated using PyMOL v3.0.
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Image Search Results


Representative lowest energy docking poses of (a) cis -PST-1, (b) trans -PST-1, (c) cis -proPST-1, and (d) trans -proPST-1 within the colchicine binding pocket of tubulin (PDB ID: 5LYJ). Ligands are represented as orange sticks, while interacting amino acid residues are shown as yellow sticks and labelled using single-letter amino acid notation. Hydrogen-bonding and hydrophobic interactions are indicated by red and blue dashed lines, respectively, with corresponding interaction distances (Å) shown. Structures and interaction maps were generated using PyMOL v3.0.

Journal: Nanoscale Advances

Article Title: Simultaneous activation and release of a microtubule inhibitor from amphiphilic polymeric nanoparticles

doi: 10.1039/d6na00763e

Figure Lengend Snippet: Representative lowest energy docking poses of (a) cis -PST-1, (b) trans -PST-1, (c) cis -proPST-1, and (d) trans -proPST-1 within the colchicine binding pocket of tubulin (PDB ID: 5LYJ). Ligands are represented as orange sticks, while interacting amino acid residues are shown as yellow sticks and labelled using single-letter amino acid notation. Hydrogen-bonding and hydrophobic interactions are indicated by red and blue dashed lines, respectively, with corresponding interaction distances (Å) shown. Structures and interaction maps were generated using PyMOL v3.0.

Article Snippet: Tubulin MAP-rich (porcine brain) (Cat. #ML116), Tubulin protein (fluorescent HiLyte 488): porcine brain (Cat. #TL488M), General tubulin buffer (Cat. #BST01), Tubulin glycerol buffer (Cat. #BST05) and Taxol (Cat. #TXD01) and GTP (Cat. #BTS06) were obtained from Cytoskeleton, Inc and used as per the instruction manual.

Techniques: Docking Assay, Binding Assay, Generated

(a) Schematic representation of light-controlled inhibition of microtubule polymerisation by proPST-1-loaded polymer nanoparticles (proPST-1@PN). Under dark conditions, the encapsulated photocaged prodrug remains inactive, allowing normal microtubule formation. Upon 365 nm irradiation, photolytic uncaging and release of active cis -PST-1 suppress microtubule assembly. Created in BioRender. Singh, H. (2026) https://BioRender.com/fac5r0eT . (b) Tubulin polymerisation kinetics monitored by absorbance at 340 nm for control samples, empty polymer nanoparticles (PN control), and proPST-1@PN under dark and irradiated conditions. Irradiation of proPST-1@PN results in pronounced inhibition of tubulin polymerisation, whereas no inhibition is observed in the dark. (c) Fluorescence microscopy images of microtubule structures formed in the presence of control samples, proPST-1@PN under dark conditions, and irradiated proPST-1@PN. Normal microtubule growth and network formation are observed in control and dark conditions, while irradiation results in substantial disruption of microtubule assembly. Scale bars: 10 µm.

Journal: Nanoscale Advances

Article Title: Simultaneous activation and release of a microtubule inhibitor from amphiphilic polymeric nanoparticles

doi: 10.1039/d6na00763e

Figure Lengend Snippet: (a) Schematic representation of light-controlled inhibition of microtubule polymerisation by proPST-1-loaded polymer nanoparticles (proPST-1@PN). Under dark conditions, the encapsulated photocaged prodrug remains inactive, allowing normal microtubule formation. Upon 365 nm irradiation, photolytic uncaging and release of active cis -PST-1 suppress microtubule assembly. Created in BioRender. Singh, H. (2026) https://BioRender.com/fac5r0eT . (b) Tubulin polymerisation kinetics monitored by absorbance at 340 nm for control samples, empty polymer nanoparticles (PN control), and proPST-1@PN under dark and irradiated conditions. Irradiation of proPST-1@PN results in pronounced inhibition of tubulin polymerisation, whereas no inhibition is observed in the dark. (c) Fluorescence microscopy images of microtubule structures formed in the presence of control samples, proPST-1@PN under dark conditions, and irradiated proPST-1@PN. Normal microtubule growth and network formation are observed in control and dark conditions, while irradiation results in substantial disruption of microtubule assembly. Scale bars: 10 µm.

Article Snippet: Tubulin MAP-rich (porcine brain) (Cat. #ML116), Tubulin protein (fluorescent HiLyte 488): porcine brain (Cat. #TL488M), General tubulin buffer (Cat. #BST01), Tubulin glycerol buffer (Cat. #BST05) and Taxol (Cat. #TXD01) and GTP (Cat. #BTS06) were obtained from Cytoskeleton, Inc and used as per the instruction manual.

Techniques: Inhibition, Polymer, Irradiation, Control, Fluorescence, Microscopy, Disruption