atlas-based imaging data analysis of structural and functional mouse brain mri (aidamri)  (Allen Institute for Brain Science)

Journal: Human Brain Mapping

Article Title: Comparative validation of automated presurgical tractography based on constrained spherical deconvolution and diffusion tensor imaging with direct electrical stimulation

doi: 10.1002/hbm.26662

Figure Lengend Snippet: Summarized demographics, pathological type, distribution, and volumes.

Article Snippet: All acquired images were converted to the brain imaging data structure (BIDS) (Gorgolewski et al., ) format using the KU Leuven Neuroimaging suite (KUL_NIS) ( KULeuven Neuro Imaging Suite (KUL_NIS) , 2018/ ) ( https://github.com/treanus/KUL_NIS ) and dcm2bids (Bedetti et al., ).

Techniques:

Journal: Human Brain Mapping

Article Title: Comparative validation of automated presurgical tractography based on constrained spherical deconvolution and diffusion tensor imaging with direct electrical stimulation

doi: 10.1002/hbm.26662

Figure Lengend Snippet: Schematic representation of the data preprocessing and analysis workflow used to compare different tractography results to intraoperative mapping outcome. BIDS, brain imaging data structure; DSC, dice similarity coefficient; DTI, diffusion tensor imaging; FACT, fiber assignment by continuous tracking; JI, Jaccard index; KUL_FWT, KU Leuven fun with tracts; KUL_NIS, KU Leuven neuroimaging suite; KUL_VBG, KU Leuven virtual brain grafting; MRI, magnetic resonance imaging.

Article Snippet: All acquired images were converted to the brain imaging data structure (BIDS) (Gorgolewski et al., ) format using the KU Leuven Neuroimaging suite (KUL_NIS) ( KULeuven Neuro Imaging Suite (KUL_NIS) , 2018/ ) ( https://github.com/treanus/KUL_NIS ) and dcm2bids (Bedetti et al., ).

Techniques: Imaging, Diffusion-based Assay, Magnetic Resonance Imaging

Journal: Frontiers in Neuroinformatics

Article Title: The past, present and future of neuroscience data sharing: a perspective on the state of practices and infrastructure for FAIR

doi: 10.3389/fninf.2023.1276407

Figure Lengend Snippet: State of population of selected data repositories 2014 vs. 2023.

Article Snippet: The INCF was created to help with this process of standardization and produced some early successes, e.g., the Waxholm space for registration of mouse and rat brain data ( ; ), the Neuroimaging Data Model ( ) the Brain Imaging Data Structure ( ) were produced with support from INCF.

Techniques: Imaging, Functional Assay, Optical Imaging, Electron Microscopy

Journal: Frontiers in Neuroinformatics

Article Title: The past, present and future of neuroscience data sharing: a perspective on the state of practices and infrastructure for FAIR

doi: 10.3389/fninf.2023.1276407

Figure Lengend Snippet:

Article Snippet: The INCF was created to help with this process of standardization and produced some early successes, e.g., the Waxholm space for registration of mouse and rat brain data ( ; ), the Neuroimaging Data Model ( ) the Brain Imaging Data Structure ( ) were produced with support from INCF.

Techniques: Microscopy, Imaging, Computed Tomography, Functional Assay, Magnetic Resonance Imaging, Positron Emission Tomography, Activity Assay, Single Photon Emission Computed Tomography