Review



boxplots and histograms  (Plotly Technologies Inc)

 
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
    • 90
      Buy from Supplier

    Structured Review

    Plotly Technologies Inc boxplots and histograms
    Seqrutinator is robust and flexible. A Sequence fate in different pipelines. Top: Alluvial plot showing the fate of initial BAHD, CYP and UGT representatives (2003, 6782, and 3994 sequences respectively from 16 species sets (Ath10 for A. thaliana ) and the curated SwissProt set) in different pipelines of following Pfam scans with cut-off thresholds as indicated. Bottom: Schematic illustration of applied pipelines (S: SSR (1); N: NHHR (2); G: GIR (3) C: CGSR (4); P: PR (5); PS: Pfam Scan; and A: accepted). α2 and α5 indicate pipes with the more strict 2.35σ cut-off in NHHR and PR, respectively. B HMMERCTTER clustering of BAHD sequence sets. Top: Cluster-wise colored maximum likelihood trees and HMMERCTTER partitions of five BAHD sequence-sets as indicated: Input: partition of initial sequences; Pfam: partition of sequences obtained with most significant Pfam scan (expect value 1E-50); 12345 def: partition of sequences accepted by default Seqrutinator pipeline; 4235 and 134: partitions of sequences accepted by alternative Seqrutinator pipelines. Each cluster is automatically assigned a different color, black leaves are unclustered sequences or orphans. Bottom: Numerical abstract of clustering analysis of all nine tested datasets. Shown are the total number of sequences, the number and percentage of clustered sequences, the number of clusters and the cluster scores ((Clustered sequences-Orphans)/Total Sequences). C <t>Boxplots</t> of cluster sizes of obtained HMMERCTTER partitions. The dotted lines show the mean and the standard deviation
    Boxplots And Histograms, supplied by Plotly Technologies Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/boxplot+and+histogram/box+and+whisker+plots/pmc11346255-431-0-6
    Average 90 stars, based on 1 article reviews
    boxplots and histograms - by Bioz Stars, 2026-10
    90/100 stars

    Images

    1) Product Images from "Seqrutinator: scrutiny of large protein superfamily sequence datasets for the identification and elimination of non-functional homologues"

    Article Title: Seqrutinator: scrutiny of large protein superfamily sequence datasets for the identification and elimination of non-functional homologues

    Journal: Genome Biology

    doi: 10.1186/s13059-024-03371-y

    Seqrutinator is robust and flexible. A Sequence fate in different pipelines. Top: Alluvial plot showing the fate of initial BAHD, CYP and UGT representatives (2003, 6782, and 3994 sequences respectively from 16 species sets (Ath10 for A. thaliana ) and the curated SwissProt set) in different pipelines of following Pfam scans with cut-off thresholds as indicated. Bottom: Schematic illustration of applied pipelines (S: SSR (1); N: NHHR (2); G: GIR (3) C: CGSR (4); P: PR (5); PS: Pfam Scan; and A: accepted). α2 and α5 indicate pipes with the more strict 2.35σ cut-off in NHHR and PR, respectively. B HMMERCTTER clustering of BAHD sequence sets. Top: Cluster-wise colored maximum likelihood trees and HMMERCTTER partitions of five BAHD sequence-sets as indicated: Input: partition of initial sequences; Pfam: partition of sequences obtained with most significant Pfam scan (expect value 1E-50); 12345 def: partition of sequences accepted by default Seqrutinator pipeline; 4235 and 134: partitions of sequences accepted by alternative Seqrutinator pipelines. Each cluster is automatically assigned a different color, black leaves are unclustered sequences or orphans. Bottom: Numerical abstract of clustering analysis of all nine tested datasets. Shown are the total number of sequences, the number and percentage of clustered sequences, the number of clusters and the cluster scores ((Clustered sequences-Orphans)/Total Sequences). C Boxplots of cluster sizes of obtained HMMERCTTER partitions. The dotted lines show the mean and the standard deviation
    Figure Legend Snippet: Seqrutinator is robust and flexible. A Sequence fate in different pipelines. Top: Alluvial plot showing the fate of initial BAHD, CYP and UGT representatives (2003, 6782, and 3994 sequences respectively from 16 species sets (Ath10 for A. thaliana ) and the curated SwissProt set) in different pipelines of following Pfam scans with cut-off thresholds as indicated. Bottom: Schematic illustration of applied pipelines (S: SSR (1); N: NHHR (2); G: GIR (3) C: CGSR (4); P: PR (5); PS: Pfam Scan; and A: accepted). α2 and α5 indicate pipes with the more strict 2.35σ cut-off in NHHR and PR, respectively. B HMMERCTTER clustering of BAHD sequence sets. Top: Cluster-wise colored maximum likelihood trees and HMMERCTTER partitions of five BAHD sequence-sets as indicated: Input: partition of initial sequences; Pfam: partition of sequences obtained with most significant Pfam scan (expect value 1E-50); 12345 def: partition of sequences accepted by default Seqrutinator pipeline; 4235 and 134: partitions of sequences accepted by alternative Seqrutinator pipelines. Each cluster is automatically assigned a different color, black leaves are unclustered sequences or orphans. Bottom: Numerical abstract of clustering analysis of all nine tested datasets. Shown are the total number of sequences, the number and percentage of clustered sequences, the number of clusters and the cluster scores ((Clustered sequences-Orphans)/Total Sequences). C Boxplots of cluster sizes of obtained HMMERCTTER partitions. The dotted lines show the mean and the standard deviation

    Techniques Used: Sequencing, Standard Deviation

    Related Articles

    Generated:

    Article Title: A high content imaging assay for identification of specific inhibitors of native Plasmodium liver stage protein synthesis.
    Article Snippet: .. Scatter plots and box plots were generated using Plotly Chart Studio. .. We thank the University of Georgia SporoCore for providing P. berghei-infected mosqui tos, and Medicines for Malaria Venture for providing the MMV Validation Set, Pathogen Box, and MMV634140 and MMV667494.

    Article Title: Genome sequencing and analysis of black flounder ( Paralichthys orbignyanus ) reveals new insights into Pleuronectiformes genomic size and structure
    Article Snippet: .. Boxplots were generated using Plotly (Plotly Technologies Inc. Collaborative data science. ..

    Article Title: Characterization of 53 Multiplexed Targeted Proteomics Assays for Verification Studies in Cancer Cell Lines
    Article Snippet: .. Additional analysis was performed in Excel, except for boxplots, which were generated with Plotly Web server ( plotly.com ). ..

    other:


    Article Title: Application of Different Python Libraries for Visualisation of Female Genital Mutilation
    Article Snippet: Figure 10 shows the box plot that visualize eight Africa countries with female genital mutilation cases using Python libraries like Pandas and Plotly.

    Article Title: Seqrutinator: scrutiny of large protein superfamily sequence datasets for the identification and elimination of non-functional homologues
    Article Snippet: Boxplots and histograms were prepared with Plotly (Plotly Technologies Inc. Collaborative data science.

    Sequencing:

    Article Title: Reconstruction of small subunit ribosomal RNA from high‐throughput sequencing data: A comparative study of metagenomics and total RNA sequencing
    Article Snippet: .. For each aquarium sample replicate and sequencing type, we visualized the prokaryote:eukaryote ratio across all combinations of data processing tools using boxplots with the box function of Plotly. ..



    Similar Products

    stacked histograms, bar charts, and boxplots  (GraphPad Software Inc)
    90
    GraphPad Software Inc stacked histograms, bar charts, and boxplots
    Stacked Histograms, Bar Charts, And Boxplots, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/boxplot+and+histogram/stacked+histograms++bar+charts++and+boxplots/pm40238191-91-5-9
    Average 90 stars, based on 1 article reviews
    stacked histograms, bar charts, and boxplots - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    bar graphs, stacked histograms, and boxplots  (GraphPad Software Inc)
    90
    GraphPad Software Inc bar graphs, stacked histograms, and boxplots
    Bar Graphs, Stacked Histograms, And Boxplots, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/boxplot+and+histogram/bar+graphs++stacked+histograms++and+boxplots/pm39679618-240-6-10
    Average 90 stars, based on 1 article reviews
    bar graphs, stacked histograms, and boxplots - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    boxplots and histograms  (Plotly Technologies Inc)
    90
    Plotly Technologies Inc boxplots and histograms
    Seqrutinator is robust and flexible. A Sequence fate in different pipelines. Top: Alluvial plot showing the fate of initial BAHD, CYP and UGT representatives (2003, 6782, and 3994 sequences respectively from 16 species sets (Ath10 for A. thaliana ) and the curated SwissProt set) in different pipelines of following Pfam scans with cut-off thresholds as indicated. Bottom: Schematic illustration of applied pipelines (S: SSR (1); N: NHHR (2); G: GIR (3) C: CGSR (4); P: PR (5); PS: Pfam Scan; and A: accepted). α2 and α5 indicate pipes with the more strict 2.35σ cut-off in NHHR and PR, respectively. B HMMERCTTER clustering of BAHD sequence sets. Top: Cluster-wise colored maximum likelihood trees and HMMERCTTER partitions of five BAHD sequence-sets as indicated: Input: partition of initial sequences; Pfam: partition of sequences obtained with most significant Pfam scan (expect value 1E-50); 12345 def: partition of sequences accepted by default Seqrutinator pipeline; 4235 and 134: partitions of sequences accepted by alternative Seqrutinator pipelines. Each cluster is automatically assigned a different color, black leaves are unclustered sequences or orphans. Bottom: Numerical abstract of clustering analysis of all nine tested datasets. Shown are the total number of sequences, the number and percentage of clustered sequences, the number of clusters and the cluster scores ((Clustered sequences-Orphans)/Total Sequences). C <t>Boxplots</t> of cluster sizes of obtained HMMERCTTER partitions. The dotted lines show the mean and the standard deviation
    Boxplots And Histograms, supplied by Plotly Technologies Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/boxplot+and+histogram/box+and+whisker+plots/pmc11346255-431-0-6
    Average 90 stars, based on 1 article reviews
    boxplots and histograms - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    histograms and boxplot analyses  (GraphPad Software Inc)
    90
    GraphPad Software Inc histograms and boxplot analyses
    Seqrutinator is robust and flexible. A Sequence fate in different pipelines. Top: Alluvial plot showing the fate of initial BAHD, CYP and UGT representatives (2003, 6782, and 3994 sequences respectively from 16 species sets (Ath10 for A. thaliana ) and the curated SwissProt set) in different pipelines of following Pfam scans with cut-off thresholds as indicated. Bottom: Schematic illustration of applied pipelines (S: SSR (1); N: NHHR (2); G: GIR (3) C: CGSR (4); P: PR (5); PS: Pfam Scan; and A: accepted). α2 and α5 indicate pipes with the more strict 2.35σ cut-off in NHHR and PR, respectively. B HMMERCTTER clustering of BAHD sequence sets. Top: Cluster-wise colored maximum likelihood trees and HMMERCTTER partitions of five BAHD sequence-sets as indicated: Input: partition of initial sequences; Pfam: partition of sequences obtained with most significant Pfam scan (expect value 1E-50); 12345 def: partition of sequences accepted by default Seqrutinator pipeline; 4235 and 134: partitions of sequences accepted by alternative Seqrutinator pipelines. Each cluster is automatically assigned a different color, black leaves are unclustered sequences or orphans. Bottom: Numerical abstract of clustering analysis of all nine tested datasets. Shown are the total number of sequences, the number and percentage of clustered sequences, the number of clusters and the cluster scores ((Clustered sequences-Orphans)/Total Sequences). C <t>Boxplots</t> of cluster sizes of obtained HMMERCTTER partitions. The dotted lines show the mean and the standard deviation
    Histograms And Boxplot Analyses, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/boxplot+and+histogram/histograms+and+boxplot+analyses/pm39145425-392-2-7
    Average 90 stars, based on 1 article reviews
    histograms and boxplot analyses - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    histograms and boxplot graphs  (GraphPad Software Inc)
    90
    GraphPad Software Inc histograms and boxplot graphs
    Seqrutinator is robust and flexible. A Sequence fate in different pipelines. Top: Alluvial plot showing the fate of initial BAHD, CYP and UGT representatives (2003, 6782, and 3994 sequences respectively from 16 species sets (Ath10 for A. thaliana ) and the curated SwissProt set) in different pipelines of following Pfam scans with cut-off thresholds as indicated. Bottom: Schematic illustration of applied pipelines (S: SSR (1); N: NHHR (2); G: GIR (3) C: CGSR (4); P: PR (5); PS: Pfam Scan; and A: accepted). α2 and α5 indicate pipes with the more strict 2.35σ cut-off in NHHR and PR, respectively. B HMMERCTTER clustering of BAHD sequence sets. Top: Cluster-wise colored maximum likelihood trees and HMMERCTTER partitions of five BAHD sequence-sets as indicated: Input: partition of initial sequences; Pfam: partition of sequences obtained with most significant Pfam scan (expect value 1E-50); 12345 def: partition of sequences accepted by default Seqrutinator pipeline; 4235 and 134: partitions of sequences accepted by alternative Seqrutinator pipelines. Each cluster is automatically assigned a different color, black leaves are unclustered sequences or orphans. Bottom: Numerical abstract of clustering analysis of all nine tested datasets. Shown are the total number of sequences, the number and percentage of clustered sequences, the number of clusters and the cluster scores ((Clustered sequences-Orphans)/Total Sequences). C <t>Boxplots</t> of cluster sizes of obtained HMMERCTTER partitions. The dotted lines show the mean and the standard deviation
    Histograms And Boxplot Graphs, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/boxplot+and+histogram/histograms+and+boxplot+graphs/pmc11237192-341-2-7
    Average 90 stars, based on 1 article reviews
    histograms and boxplot graphs - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    cumulative histograms and boxplots  (GraphPad Software Inc)
    90
    GraphPad Software Inc cumulative histograms and boxplots
    Seqrutinator is robust and flexible. A Sequence fate in different pipelines. Top: Alluvial plot showing the fate of initial BAHD, CYP and UGT representatives (2003, 6782, and 3994 sequences respectively from 16 species sets (Ath10 for A. thaliana ) and the curated SwissProt set) in different pipelines of following Pfam scans with cut-off thresholds as indicated. Bottom: Schematic illustration of applied pipelines (S: SSR (1); N: NHHR (2); G: GIR (3) C: CGSR (4); P: PR (5); PS: Pfam Scan; and A: accepted). α2 and α5 indicate pipes with the more strict 2.35σ cut-off in NHHR and PR, respectively. B HMMERCTTER clustering of BAHD sequence sets. Top: Cluster-wise colored maximum likelihood trees and HMMERCTTER partitions of five BAHD sequence-sets as indicated: Input: partition of initial sequences; Pfam: partition of sequences obtained with most significant Pfam scan (expect value 1E-50); 12345 def: partition of sequences accepted by default Seqrutinator pipeline; 4235 and 134: partitions of sequences accepted by alternative Seqrutinator pipelines. Each cluster is automatically assigned a different color, black leaves are unclustered sequences or orphans. Bottom: Numerical abstract of clustering analysis of all nine tested datasets. Shown are the total number of sequences, the number and percentage of clustered sequences, the number of clusters and the cluster scores ((Clustered sequences-Orphans)/Total Sequences). C <t>Boxplots</t> of cluster sizes of obtained HMMERCTTER partitions. The dotted lines show the mean and the standard deviation
    Cumulative Histograms And Boxplots, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/boxplot+and+histogram/cumulative+histograms+and+boxplots/pm38266616-165-3-7
    Average 90 stars, based on 1 article reviews
    cumulative histograms and boxplots - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    boxplot and histograms  (GraphPad Software Inc)
    90
    GraphPad Software Inc boxplot and histograms
    Seqrutinator is robust and flexible. A Sequence fate in different pipelines. Top: Alluvial plot showing the fate of initial BAHD, CYP and UGT representatives (2003, 6782, and 3994 sequences respectively from 16 species sets (Ath10 for A. thaliana ) and the curated SwissProt set) in different pipelines of following Pfam scans with cut-off thresholds as indicated. Bottom: Schematic illustration of applied pipelines (S: SSR (1); N: NHHR (2); G: GIR (3) C: CGSR (4); P: PR (5); PS: Pfam Scan; and A: accepted). α2 and α5 indicate pipes with the more strict 2.35σ cut-off in NHHR and PR, respectively. B HMMERCTTER clustering of BAHD sequence sets. Top: Cluster-wise colored maximum likelihood trees and HMMERCTTER partitions of five BAHD sequence-sets as indicated: Input: partition of initial sequences; Pfam: partition of sequences obtained with most significant Pfam scan (expect value 1E-50); 12345 def: partition of sequences accepted by default Seqrutinator pipeline; 4235 and 134: partitions of sequences accepted by alternative Seqrutinator pipelines. Each cluster is automatically assigned a different color, black leaves are unclustered sequences or orphans. Bottom: Numerical abstract of clustering analysis of all nine tested datasets. Shown are the total number of sequences, the number and percentage of clustered sequences, the number of clusters and the cluster scores ((Clustered sequences-Orphans)/Total Sequences). C <t>Boxplots</t> of cluster sizes of obtained HMMERCTTER partitions. The dotted lines show the mean and the standard deviation
    Boxplot And Histograms, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/boxplot+and+histogram/boxplot+and+histograms/pmc09783931-208-0-6
    Average 90 stars, based on 1 article reviews
    boxplot and histograms - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    boxplots, histograms and dot plots  (SYSTAT)
    90
    SYSTAT boxplots, histograms and dot plots
    Seqrutinator is robust and flexible. A Sequence fate in different pipelines. Top: Alluvial plot showing the fate of initial BAHD, CYP and UGT representatives (2003, 6782, and 3994 sequences respectively from 16 species sets (Ath10 for A. thaliana ) and the curated SwissProt set) in different pipelines of following Pfam scans with cut-off thresholds as indicated. Bottom: Schematic illustration of applied pipelines (S: SSR (1); N: NHHR (2); G: GIR (3) C: CGSR (4); P: PR (5); PS: Pfam Scan; and A: accepted). α2 and α5 indicate pipes with the more strict 2.35σ cut-off in NHHR and PR, respectively. B HMMERCTTER clustering of BAHD sequence sets. Top: Cluster-wise colored maximum likelihood trees and HMMERCTTER partitions of five BAHD sequence-sets as indicated: Input: partition of initial sequences; Pfam: partition of sequences obtained with most significant Pfam scan (expect value 1E-50); 12345 def: partition of sequences accepted by default Seqrutinator pipeline; 4235 and 134: partitions of sequences accepted by alternative Seqrutinator pipelines. Each cluster is automatically assigned a different color, black leaves are unclustered sequences or orphans. Bottom: Numerical abstract of clustering analysis of all nine tested datasets. Shown are the total number of sequences, the number and percentage of clustered sequences, the number of clusters and the cluster scores ((Clustered sequences-Orphans)/Total Sequences). C <t>Boxplots</t> of cluster sizes of obtained HMMERCTTER partitions. The dotted lines show the mean and the standard deviation
    Boxplots, Histograms And Dot Plots, supplied by SYSTAT, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/boxplot+and+histogram/boxplots++histograms+and+dot+plots/pm35676735-126-9-20
    Average 90 stars, based on 1 article reviews
    boxplots, histograms and dot plots - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    boxplot and histogram  (GraphPad Software Inc)
    90
    GraphPad Software Inc boxplot and histogram
    Seqrutinator is robust and flexible. A Sequence fate in different pipelines. Top: Alluvial plot showing the fate of initial BAHD, CYP and UGT representatives (2003, 6782, and 3994 sequences respectively from 16 species sets (Ath10 for A. thaliana ) and the curated SwissProt set) in different pipelines of following Pfam scans with cut-off thresholds as indicated. Bottom: Schematic illustration of applied pipelines (S: SSR (1); N: NHHR (2); G: GIR (3) C: CGSR (4); P: PR (5); PS: Pfam Scan; and A: accepted). α2 and α5 indicate pipes with the more strict 2.35σ cut-off in NHHR and PR, respectively. B HMMERCTTER clustering of BAHD sequence sets. Top: Cluster-wise colored maximum likelihood trees and HMMERCTTER partitions of five BAHD sequence-sets as indicated: Input: partition of initial sequences; Pfam: partition of sequences obtained with most significant Pfam scan (expect value 1E-50); 12345 def: partition of sequences accepted by default Seqrutinator pipeline; 4235 and 134: partitions of sequences accepted by alternative Seqrutinator pipelines. Each cluster is automatically assigned a different color, black leaves are unclustered sequences or orphans. Bottom: Numerical abstract of clustering analysis of all nine tested datasets. Shown are the total number of sequences, the number and percentage of clustered sequences, the number of clusters and the cluster scores ((Clustered sequences-Orphans)/Total Sequences). C <t>Boxplots</t> of cluster sizes of obtained HMMERCTTER partitions. The dotted lines show the mean and the standard deviation
    Boxplot And Histogram, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/boxplot+and+histogram/boxplot+and+histograms/pmc07938533-117-5-9
    Average 90 stars, based on 1 article reviews
    boxplot and histogram - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    boxplots and histograms using graphpad prism version 7.04  (GraphPad Software Inc)
    90
    GraphPad Software Inc boxplots and histograms using graphpad prism version 7.04
    Seqrutinator is robust and flexible. A Sequence fate in different pipelines. Top: Alluvial plot showing the fate of initial BAHD, CYP and UGT representatives (2003, 6782, and 3994 sequences respectively from 16 species sets (Ath10 for A. thaliana ) and the curated SwissProt set) in different pipelines of following Pfam scans with cut-off thresholds as indicated. Bottom: Schematic illustration of applied pipelines (S: SSR (1); N: NHHR (2); G: GIR (3) C: CGSR (4); P: PR (5); PS: Pfam Scan; and A: accepted). α2 and α5 indicate pipes with the more strict 2.35σ cut-off in NHHR and PR, respectively. B HMMERCTTER clustering of BAHD sequence sets. Top: Cluster-wise colored maximum likelihood trees and HMMERCTTER partitions of five BAHD sequence-sets as indicated: Input: partition of initial sequences; Pfam: partition of sequences obtained with most significant Pfam scan (expect value 1E-50); 12345 def: partition of sequences accepted by default Seqrutinator pipeline; 4235 and 134: partitions of sequences accepted by alternative Seqrutinator pipelines. Each cluster is automatically assigned a different color, black leaves are unclustered sequences or orphans. Bottom: Numerical abstract of clustering analysis of all nine tested datasets. Shown are the total number of sequences, the number and percentage of clustered sequences, the number of clusters and the cluster scores ((Clustered sequences-Orphans)/Total Sequences). C <t>Boxplots</t> of cluster sizes of obtained HMMERCTTER partitions. The dotted lines show the mean and the standard deviation
    Boxplots And Histograms Using Graphpad Prism Version 7.04, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/boxplot+and+histogram/boxplots+and+histograms+using+graphpad+prism+version+7+04/10__1007_slash_s10841___020___00224___4-79-12-16
    Average 90 stars, based on 1 article reviews
    boxplots and histograms using graphpad prism version 7.04 - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Seqrutinator is robust and flexible. A Sequence fate in different pipelines. Top: Alluvial plot showing the fate of initial BAHD, CYP and UGT representatives (2003, 6782, and 3994 sequences respectively from 16 species sets (Ath10 for A. thaliana ) and the curated SwissProt set) in different pipelines of following Pfam scans with cut-off thresholds as indicated. Bottom: Schematic illustration of applied pipelines (S: SSR (1); N: NHHR (2); G: GIR (3) C: CGSR (4); P: PR (5); PS: Pfam Scan; and A: accepted). α2 and α5 indicate pipes with the more strict 2.35σ cut-off in NHHR and PR, respectively. B HMMERCTTER clustering of BAHD sequence sets. Top: Cluster-wise colored maximum likelihood trees and HMMERCTTER partitions of five BAHD sequence-sets as indicated: Input: partition of initial sequences; Pfam: partition of sequences obtained with most significant Pfam scan (expect value 1E-50); 12345 def: partition of sequences accepted by default Seqrutinator pipeline; 4235 and 134: partitions of sequences accepted by alternative Seqrutinator pipelines. Each cluster is automatically assigned a different color, black leaves are unclustered sequences or orphans. Bottom: Numerical abstract of clustering analysis of all nine tested datasets. Shown are the total number of sequences, the number and percentage of clustered sequences, the number of clusters and the cluster scores ((Clustered sequences-Orphans)/Total Sequences). C Boxplots of cluster sizes of obtained HMMERCTTER partitions. The dotted lines show the mean and the standard deviation

    Journal: Genome Biology

    Article Title: Seqrutinator: scrutiny of large protein superfamily sequence datasets for the identification and elimination of non-functional homologues

    doi: 10.1186/s13059-024-03371-y

    Figure Lengend Snippet: Seqrutinator is robust and flexible. A Sequence fate in different pipelines. Top: Alluvial plot showing the fate of initial BAHD, CYP and UGT representatives (2003, 6782, and 3994 sequences respectively from 16 species sets (Ath10 for A. thaliana ) and the curated SwissProt set) in different pipelines of following Pfam scans with cut-off thresholds as indicated. Bottom: Schematic illustration of applied pipelines (S: SSR (1); N: NHHR (2); G: GIR (3) C: CGSR (4); P: PR (5); PS: Pfam Scan; and A: accepted). α2 and α5 indicate pipes with the more strict 2.35σ cut-off in NHHR and PR, respectively. B HMMERCTTER clustering of BAHD sequence sets. Top: Cluster-wise colored maximum likelihood trees and HMMERCTTER partitions of five BAHD sequence-sets as indicated: Input: partition of initial sequences; Pfam: partition of sequences obtained with most significant Pfam scan (expect value 1E-50); 12345 def: partition of sequences accepted by default Seqrutinator pipeline; 4235 and 134: partitions of sequences accepted by alternative Seqrutinator pipelines. Each cluster is automatically assigned a different color, black leaves are unclustered sequences or orphans. Bottom: Numerical abstract of clustering analysis of all nine tested datasets. Shown are the total number of sequences, the number and percentage of clustered sequences, the number of clusters and the cluster scores ((Clustered sequences-Orphans)/Total Sequences). C Boxplots of cluster sizes of obtained HMMERCTTER partitions. The dotted lines show the mean and the standard deviation

    Article Snippet: Boxplots and histograms were prepared with Plotly (Plotly Technologies Inc. Collaborative data science.

    Techniques: Sequencing, Standard Deviation