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simplot program  (Simplot Science)

 
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    Simplot Science simplot program
    Simplot Program, supplied by Simplot Science, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/boot+scanning+analysis+with+simplot+v3%2E5%2E1/program+simplot/pm41600874-117-16-16
    Average 86 stars, based on 1 article reviews
    simplot program - by Bioz Stars, 2026-09
    86/100 stars

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    Related Articles

    other:

    Article Title: Research note: Epidemiology and genotypic diversity of duck tembusu virus in geese in Partial Areas of Guangdong Province, Southern China
    Article Snippet: Breakpoint positions and parental lineages were further validated through SimPlot v3.5.1 similarity scanning

    Sequencing:

    Article Title: Comprehensive Surveillance of Fowl Adenovirus in the Americas Reveals the Circulation of Multiple Serotypes and Evidence of Recombination.
    Article Snippet: Fowl adenoviruses (FAdVs) comprise five species and twelve serotypes that infect chickens, several of which are associated with disease and significant economic losses in poultry farming.. Although they are globally distributed, molecular characterization studies remain limited in many regions.. This study aimed to elucidate the frequency and circulation of FAdV serotypes in South America, Central America, and the Caribbean.

    Article Title: Human Parvovirus B19 Co-infection in a Patient with Hemorrhagic Fever with Renal Syndrome: A Case Report
    Article Snippet: The nucleotide and amino acid sequence identities were calculated with the MegAlign program in DNAstar v7.1. .. The sequence alignment analysis was implemented with the Simplot program V3.5.1 with a sliding window of 200 and a step size of 20 residues. ..



    Similar Products

    boot scanning analysis simplot v3.5.1  (Simplot Science)
    90
    Simplot Science boot scanning analysis simplot v3.5.1
    Recombination events and breakpoints identified in NACMR092. (A) Recombinant breakpoint positions were calculated by boot scanning analysis using Simplot <t>v3.5.1,</t> as described. The percentages of permuted trees (y-axis) of the subtypes at each sequence position (x-axis) are shown. (B) Genomic map of the near-full-length sequence of NACMR092 (based on HXB2 numbering). The mosaic map was generated using the Los Alamos Recombinant HIV-1 Drawing Tool (https://hiv.lanl.gov/content/sequence/DRAW_CRF/recom_mapper.html). The start (nucleotide 874) and end (nucleotide 9403) of the near-full-length sequence, as well as the breakpoints are shown. Genomic sequences originating from HIV-1 subtype A1 (grey color), CRF01_AE (red color), and CRF02_AG (blue color) are shown. LTR, long-terminal repeat; gag, group-specific antigen; pol, polymerase; vif, viral infectivity factor; vpr, viral protein R; vpu, viral protein U; env, envelope; tat, trans-activator of transcription; nef, negative factor. Color images are available online.
    Boot Scanning Analysis Simplot V3.5.1, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/boot+scanning+analysis+with+simplot+v3%2E5%2E1/bootscan+analysis+simplot+version+3+5+1/pmc06688114-139-70-69
    Average 90 stars, based on 1 article reviews
    boot scanning analysis simplot v3.5.1 - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    boot scanning analysis with simplot v3.5.1  (Simplot Science)
    90
    Simplot Science boot scanning analysis with simplot v3.5.1
    Recombination events and breakpoints identified in NACMR092. (A) Recombinant breakpoint positions were calculated by boot scanning analysis using Simplot <t>v3.5.1,</t> as described. The percentages of permuted trees (y-axis) of the subtypes at each sequence position (x-axis) are shown. (B) Genomic map of the near-full-length sequence of NACMR092 (based on HXB2 numbering). The mosaic map was generated using the Los Alamos Recombinant HIV-1 Drawing Tool (https://hiv.lanl.gov/content/sequence/DRAW_CRF/recom_mapper.html). The start (nucleotide 874) and end (nucleotide 9403) of the near-full-length sequence, as well as the breakpoints are shown. Genomic sequences originating from HIV-1 subtype A1 (grey color), CRF01_AE (red color), and CRF02_AG (blue color) are shown. LTR, long-terminal repeat; gag, group-specific antigen; pol, polymerase; vif, viral infectivity factor; vpr, viral protein R; vpu, viral protein U; env, envelope; tat, trans-activator of transcription; nef, negative factor. Color images are available online.
    Boot Scanning Analysis With Simplot V3.5.1, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/boot+scanning+analysis+with+simplot+v3%2E5%2E1/bootscan+analysis+simplot+version+3+5+1/10__1089_slash_aid__2019__0042-50-8-7
    Average 90 stars, based on 1 article reviews
    boot scanning analysis with simplot v3.5.1 - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier

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    Recombination events and breakpoints identified in NACMR092. (A) Recombinant breakpoint positions were calculated by boot scanning analysis using Simplot v3.5.1, as described. The percentages of permuted trees (y-axis) of the subtypes at each sequence position (x-axis) are shown. (B) Genomic map of the near-full-length sequence of NACMR092 (based on HXB2 numbering). The mosaic map was generated using the Los Alamos Recombinant HIV-1 Drawing Tool (https://hiv.lanl.gov/content/sequence/DRAW_CRF/recom_mapper.html). The start (nucleotide 874) and end (nucleotide 9403) of the near-full-length sequence, as well as the breakpoints are shown. Genomic sequences originating from HIV-1 subtype A1 (grey color), CRF01_AE (red color), and CRF02_AG (blue color) are shown. LTR, long-terminal repeat; gag, group-specific antigen; pol, polymerase; vif, viral infectivity factor; vpr, viral protein R; vpu, viral protein U; env, envelope; tat, trans-activator of transcription; nef, negative factor. Color images are available online.

    Journal: AIDS Research and Human Retroviruses

    Article Title: Near-Full-Length Genetic Characterization of a Novel HIV-1 Unique Recombinant with Similarities to A1, CRF01_AE, and CRFO2_AG Viruses in Yaoundé, Cameroon

    doi: 10.1089/aid.2019.0042

    Figure Lengend Snippet: Recombination events and breakpoints identified in NACMR092. (A) Recombinant breakpoint positions were calculated by boot scanning analysis using Simplot v3.5.1, as described. The percentages of permuted trees (y-axis) of the subtypes at each sequence position (x-axis) are shown. (B) Genomic map of the near-full-length sequence of NACMR092 (based on HXB2 numbering). The mosaic map was generated using the Los Alamos Recombinant HIV-1 Drawing Tool (https://hiv.lanl.gov/content/sequence/DRAW_CRF/recom_mapper.html). The start (nucleotide 874) and end (nucleotide 9403) of the near-full-length sequence, as well as the breakpoints are shown. Genomic sequences originating from HIV-1 subtype A1 (grey color), CRF01_AE (red color), and CRF02_AG (blue color) are shown. LTR, long-terminal repeat; gag, group-specific antigen; pol, polymerase; vif, viral infectivity factor; vpr, viral protein R; vpu, viral protein U; env, envelope; tat, trans-activator of transcription; nef, negative factor. Color images are available online.

    Article Snippet: Fragments I, II, III, IV, V, VI, VII, VIII, and IX of the mosaic genome correspond, respectively, to nucleotides 874–1526, 1527–1826, 1827–5029, 5030–5629, 5630–6629, 6630–6862, 6863–8862, 8863–9106, and nucleotides 9107–9403 of the HXB2 genome. fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window FIG. 2. caption a7 Recombination events and breakpoints identified in NACMR092. (A) Recombinant breakpoint positions were calculated by boot scanning analysis using Simplot v3.5.1, as described.

    Techniques: Recombinant, Sequencing, Generated, Genomic Sequencing, Infection