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Biotechnology Information blastx searches
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Related Articles

Sequencing:

Article Title: Complete genome sequence of a novel robigovirus infecting Mentha arvensis.
Article Snippet: The complete genomic sequence of a novel robigovirus, provisionally named “Mentha arvensis robigovirus 1” (MARV1), was determined by combining next-generation sequencing (NGS), reverse transcription polymerase chain reaction (RT-PCR), and rapid amplification of cDNA ends (RACE) PCR.. The complete genomic sequence of this new virus is 7617 nucleotides in length, excluding the 3′ poly(A) tail.. The MARV1 genome encodes a putative replicase, “triple gene block” proteins, and a coat protein.

Article Title: Identification and Genome Characterization of a Novel Nege-like Virus Isolated from Aphids ( Aphis gossypii ) in Yunnan Province
Article Snippet: Transcriptome assembly was carried out using Trinity (Trinityrnaseq-v2.15.1, Broad Institute) with the minimum k-mer coverage parameter (min_kmer_cov) set to 2, and all other parameters remained at their default settings. .. To identify and annotate virus-associated contigs, the assembled transcriptome contigs were analyzed using the BLASTx tool against the viral sequence database available at the National Center for Biotechnology Information (NCBI) ( https://www.ncbi.nlm.nih.gov (accessed on 25 October 2023). ..

other:

Article Title: Polyketides and fatty acids: Decoding the polyketide and fatty acid synthases evolution in Amphidinium carterae (Dinophyceae).
Article Snippet: Amphidinium carterae is a harmful bloomforming dinoflagellate, and the genus Amphidinium includes a significant number of benthic dinoflagellates, with a cosmopolitan distribution in subtropicaltropical coastal and estuarine waters (Jørgensen et al., 2004).. The species A. carterae is known for producing polyketidederived secondary metabolites such as amphidinolides, amphidinols, and amphidinins.. These compounds exhibit diverse bioactivities and have antifungal, antitumor, and hemolytic properties (Cousseau et al., 2020; Kong et al., 2016; MolinaMiras et al., 2018).

Virus:

Article Title: Identification and Genome Characterization of a Novel Nege-like Virus Isolated from Aphids ( Aphis gossypii ) in Yunnan Province
Article Snippet: Transcriptome assembly was carried out using Trinity (Trinityrnaseq-v2.15.1, Broad Institute) with the minimum k-mer coverage parameter (min_kmer_cov) set to 2, and all other parameters remained at their default settings. .. To identify and annotate virus-associated contigs, the assembled transcriptome contigs were analyzed using the BLASTx tool against the viral sequence database available at the National Center for Biotechnology Information (NCBI) ( https://www.ncbi.nlm.nih.gov (accessed on 25 October 2023). ..

Article Title: A Novel Strain of Fusarium oxysporum Virus 1 Isolated from Fusarium oxysporum f. sp. niveum Strain X-GS16 Influences Phenotypes of F. oxysporum Strain HB-TS-YT-1 hyg
Article Snippet: .. BLASTx search against National Center for the Biotechnology Information (NCBI) non-redundant database (accessed on 17 January 2024) showed that it was the most closely related to Fusarium oxysporum virus 1 (FoV1) (identity 97.46%; E value 0; query cover 60%), and designated as FoV1-FON. ..



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