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Unigene blastx alignment
Blastx Alignment, supplied by Unigene, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/blastx+alignment/blastx+program/pmc10639161-220-5-0
Average 90 stars, based on 1 article reviews
blastx alignment - by Bioz Stars, 2026-10
90/100 stars

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Article Title: Transcriptome analysis reveals the role of temperature in seed germination of Idesia polycarpa Maxim through the integration of phytohormones and sugar metabolism
Article Snippet: The germination of Idesia polycarpa Maxim seeds plays a critical role in successfully cultivating this dioecious species.. In order to reveal the mechanisms regulating the germination of I. polycarpa seeds under variable temperature environments, a comparative analysis of the phenotype information and genetic changes before and after germination of the seeds was conducted.. Using the paraffin section method, morphological and structural changes were observed at three developmental stages—seed coat cracking (CK), emergence (SE), and radicle elongation (RE).

Article Title: Growth and gene expression of Pseudomonas nitroreducens TX1 on octylphenol polyethoxylate surfactants
Article Snippet: The query unigene sequences were then matched with the subject sequences in the multiple databases using BLAST (BLASTX tool for proteins and BLASTN tool for nucleotides) at an E-value cut-off of e −5 (< 0.00001).

Article Title: Identification of novel drought-responsive lncRNAs in stone apple (Aegle marmelos L.) through whole-transcriptome analysis
Article Snippet: Unigene nucleotide query sequences were compared against the Viridiplantae protein sequence database from NCBI using the blastx-fast program, employing an e-value threshold of 1.0E-3, percent identity ≥ 95%, and a hit number threshold of 20 to identify homologs.

Article Title: Growth and gene expression of Pseudomonas nitroreducens TX1 on octylphenol polyethoxylate surfactants.
Article Snippet: The query unigene sequences were then matched with the subject sequences in the multiple databases using BLAST (BLASTX tool for proteins and BLASTN tool for nucleotides) at an E-value cut-off of e−5 (< 0.00001).

Sequencing:

Article Title: Primary metabolomics and transcriptomic techniques were used to explore the regulatory mechanisms that may influence the flavor characteristics of fresh Corylus heterophylla × Corylus avellana
Article Snippet: .. The Unigene sequence was subjected to comparison with the KEGG, NR, Swiss-Prot, GO, COG/KOG, and Trembl databases using the DIAMOND ( ) BLASTX software. .. The Unigene was subjected to amino acid sequence prediction, and annotation information for the Unigene was obtained by comparing it with the Pfam database using HMMER software.

Comparison:

Article Title: Primary metabolomics and transcriptomic techniques were used to explore the regulatory mechanisms that may influence the flavor characteristics of fresh Corylus heterophylla × Corylus avellana
Article Snippet: .. The Unigene sequence was subjected to comparison with the KEGG, NR, Swiss-Prot, GO, COG/KOG, and Trembl databases using the DIAMOND ( ) BLASTX software. .. The Unigene was subjected to amino acid sequence prediction, and annotation information for the Unigene was obtained by comparing it with the Pfam database using HMMER software.

Article Title: Molecular Mechanisms of Adventitious Root Development in Hydrangea arborescens ‘Annabelle’
Article Snippet: Hydrangea arborescens ‘Annabelle’ is characterized by its large and beautiful f lowers and strong adaptability, making it an emerging woody ornamental plant with unique advantages in the global horticultural market.. In this study, we conducted an in-depth transcriptome sequencing and analysis of four critical stages during the rooting process of ‘Annabelle’ tissue culture seedlings using RNA sequencing technology.. The aim was to elucidate the molecular mechanisms of adventitious root development in Hydrangea arborescens.

Software:

Article Title: Primary metabolomics and transcriptomic techniques were used to explore the regulatory mechanisms that may influence the flavor characteristics of fresh Corylus heterophylla × Corylus avellana
Article Snippet: .. The Unigene sequence was subjected to comparison with the KEGG, NR, Swiss-Prot, GO, COG/KOG, and Trembl databases using the DIAMOND ( ) BLASTX software. .. The Unigene was subjected to amino acid sequence prediction, and annotation information for the Unigene was obtained by comparing it with the Pfam database using HMMER software.

Article Title: Unraveling the Anthocyanin Regulatory Mechanisms of White Mutation in Verbena stricta by Integrative Transcriptome and Metabolome Analysis
Article Snippet: .. The 77,121 unigene sequences obtained for predicting and analyzing the function of V. stricta were compared with seven databases, including GO and the KEGG, using BLASTX software to acquire gene annotation information. ..

Functional Assay:

Article Title: Molecular Mechanisms of Adventitious Root Development in Hydrangea arborescens ‘Annabelle’
Article Snippet: Hydrangea arborescens ‘Annabelle’ is characterized by its large and beautiful f lowers and strong adaptability, making it an emerging woody ornamental plant with unique advantages in the global horticultural market.. In this study, we conducted an in-depth transcriptome sequencing and analysis of four critical stages during the rooting process of ‘Annabelle’ tissue culture seedlings using RNA sequencing technology.. The aim was to elucidate the molecular mechanisms of adventitious root development in Hydrangea arborescens.



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