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Unigene blastx algorithm
Blastx Algorithm, supplied by Unigene, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/blastx+algorithms/blastx/pm40877775-174-17-0
Average 86 stars, based on 1 article reviews
blastx algorithm - by Bioz Stars, 2026-10
86/100 stars

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Sequencing:

Article Title: Transcriptome Dynamics of BmN Cells During the Early Phase of Bombyx mori Nucleopolyhedrovirus Infection
Article Snippet: .. By aligning Unigene sequences to protein databases NR (NCBI non-redundant protein sequence), SwissProt (Swiss-Prot Protein Sequence Database), KEGG (Kyoto Encyclopedia of Genes and Genomes), and KOG (euKaryotic Orthologous Groups) via blastx (E-value < 0.00001), the protein with the highest sequence similarity to a given Unigene is identified, thereby providing functional annotation information for that Unigene. ..

Article Title: Transcriptome Dynamics of BmN Cells During the Early Phase of Bombyx mori Nucleopolyhedrovirus Infection
Article Snippet: .. By aligning Unigene sequences to protein databases NR (NCBI non-redundant protein sequence), SwissProt (Swiss-Prot Protein Sequence Database), KEGG (Kyoto Encyclopedia of Genes and Genomes), and KOG (euKaryotic Orthologous Groups) via blastx (E-value < 0.00001), the protein with the highest sequence similarity to a given Unigene is identified, thereby providing functional annotation information for that Unigene. ..

Functional Assay:

Article Title: Transcriptome Dynamics of BmN Cells During the Early Phase of Bombyx mori Nucleopolyhedrovirus Infection
Article Snippet: .. By aligning Unigene sequences to protein databases NR (NCBI non-redundant protein sequence), SwissProt (Swiss-Prot Protein Sequence Database), KEGG (Kyoto Encyclopedia of Genes and Genomes), and KOG (euKaryotic Orthologous Groups) via blastx (E-value < 0.00001), the protein with the highest sequence similarity to a given Unigene is identified, thereby providing functional annotation information for that Unigene. ..

Article Title: Multi-Omics Analysis Sheds Light on the Relative Roles of Hormones and Nutrients in Regulating Secondary Flowering in Prunus subhirtella 'Autumnalis'.
Article Snippet: .. The functional annotation pipeline for non-reference genes is as follows: First, DIAMOND BLASTX is used to align Unigene sequences against databases such as KEGG. .. Subsequently, based on the predicted amino acid sequences, HMMER is employed to align against the Pfam database to obtain corresponding gene annotation information.

Article Title: Transcriptome Dynamics of BmN Cells During the Early Phase of Bombyx mori Nucleopolyhedrovirus Infection
Article Snippet: .. By aligning Unigene sequences to protein databases NR (NCBI non-redundant protein sequence), SwissProt (Swiss-Prot Protein Sequence Database), KEGG (Kyoto Encyclopedia of Genes and Genomes), and KOG (euKaryotic Orthologous Groups) via blastx (E-value < 0.00001), the protein with the highest sequence similarity to a given Unigene is identified, thereby providing functional annotation information for that Unigene. ..

Article Title: Multi-Omics Analysis Sheds Light on the Relative Roles of Hormones and Nutrients in Regulating Secondary Flowering in Prunus subhirtella ‘Autumnalis’
Article Snippet: .. The functional annotation pipeline for non-reference genes is as follows: First, DIAMOND BLASTX is used to align Unigene sequences against databases such as KEGG. .. Subsequently, based on the predicted amino acid sequences, HMMER is employed to align against the Pfam database to obtain corresponding gene annotation information.

other:

Article Title: A multi-branched EMS mutant of Isodon lophanthoides var. graciliflorus exhibits significant differences in phytohormones and diterpenoids.
Article Snippet: DNA concentration and purity were evaluated using a NanoDrop 2000 ultramicro UV spectrophotometer (NanoDrop, ThermoFisher Scientific, USA), and quality was confirmed by 1% agarose gel electrophoresis.

Article Title: Transcriptomic Resource of Trissolcus cultratus: A Key Biological Control Agent for Halyomorpha halys.
Article Snippet: A total of 8,183 AR TI CL E IN P RE SS and 8,067 CDS were obtained from unigene sequences using BLASTx and translated into amino acid sequences for the Chinese and Swiss strains, respectively (Figures 5Aa,5Ab, 5Ba,5Bb).



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